Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50244 * 2 1 4 4 C 1.53033 * 109.50621 * 120.07872 * 2 1 3 5 5 N 1.46852 * 109.52498 * 60.79986 * 4 2 1 6 6 C 1.46898 * 111.00061 * 185.84155 * 5 4 2 7 7 C 1.46843 * 111.19485 * 61.74169 * 5 4 2 8 8 C 1.53034 * 109.52558 * 298.25934 * 7 5 4 9 9 C 1.53113 * 109.27636 * 59.18264 * 8 7 5 10 10 H 1.08998 * 109.52492 * 62.25194 * 9 8 7 11 11 N 1.46908 * 109.52198 * 182.44104 * 9 8 7 12 12 C 1.46897 * 110.99747 * 274.68219 * 11 9 8 13 13 C 1.50701 * 109.47047 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00050 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99973 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99786 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99812 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47251 * 59.99830 * 17 15 13 19 19 H 1.48502 * 109.46907 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47263 * 300.00115 * 17 15 13 21 21 H 1.08996 * 109.46892 * 299.99681 * 1 2 3 22 22 H 1.09001 * 109.47140 * 60.00215 * 1 2 3 23 23 H 1.09001 * 109.46459 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46686 * 180.81902 * 4 2 1 25 25 H 1.09001 * 109.46063 * 300.78797 * 4 2 1 26 26 H 1.09002 * 109.47186 * 60.00170 * 6 5 4 27 27 H 1.09004 * 109.46951 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.47387 * 300.00231 * 6 5 4 29 29 H 1.09004 * 109.46121 * 58.28000 * 7 5 4 30 30 H 1.09000 * 109.45779 * 178.25156 * 7 5 4 31 31 H 1.09000 * 109.50014 * 179.12107 * 8 7 5 32 32 H 1.09001 * 109.50182 * 299.19743 * 8 7 5 33 33 H 1.00900 * 110.99657 * 38.63113 * 11 9 8 34 34 H 1.09000 * 109.47357 * 299.99706 * 12 11 9 35 35 H 1.08998 * 109.47786 * 59.99936 * 12 11 9 36 36 H 0.97002 * 119.99591 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 1.2482 5 7 1.5684 -2.1133 1.2382 6 6 1.9232 -2.7990 2.4879 7 6 2.0862 -2.8416 0.0729 8 6 1.5766 -2.1819 -1.2104 9 6 2.0421 -0.7237 -1.2484 10 1 3.1313 -0.6894 -1.2684 11 7 1.5070 -0.0687 -2.4496 12 6 2.3779 -0.3031 -3.6091 13 6 1.7984 0.3828 -4.8194 14 1 0.8752 0.9370 -4.7357 15 6 2.4468 0.3029 -6.0336 16 7 3.5707 -0.3724 -6.1357 17 14 1.7281 1.1525 -7.5339 18 1 1.6279 2.6115 -7.2761 19 1 2.6086 0.9157 -8.7061 20 1 0.3760 0.6052 -7.8125 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 3.1309 -0.7099 1.2550 25 1 1.6664 -0.2186 2.1390 26 1 1.4648 -2.2802 3.3298 27 1 1.5610 -3.8266 2.4540 28 1 3.0066 -2.7990 2.6075 29 1 3.1760 -2.8187 0.0852 30 1 1.7444 -3.8760 0.1099 31 1 1.9738 -2.7134 -2.0752 32 1 0.4874 -2.2175 -1.2301 33 1 0.5640 -0.3740 -2.6382 34 1 3.3705 0.0984 -3.4051 35 1 2.4510 -1.3740 -3.7983 36 1 4.0270 -0.4283 -6.9898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253305611.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -27.976281 kcal Electronic energy + Delta-G solvation = -14710.812374 eV Core-core repulsion = 12421.286306 eV Total energy + Delta-G solvation = -2289.526068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56333 -37.00962 -34.97219 -33.35544 -31.99734 -28.68808 -27.79737 -26.19906 -24.15729 -23.52320 -22.59111 -19.77686 -18.50244 -17.10849 -16.72191 -16.02371 -15.92379 -15.60316 -15.31396 -14.96838 -14.23435 -14.16619 -13.66964 -13.51744 -13.18533 -13.02340 -12.75176 -12.69141 -12.39281 -12.36707 -12.22361 -11.99555 -11.66765 -11.51691 -11.28739 -10.99127 -10.64930 -9.25264 -9.00980 -8.22368 -6.33850 1.40964 1.44825 1.52823 2.40216 3.01402 3.10717 3.55064 3.83543 3.90364 4.15243 4.22165 4.35381 4.49163 4.54833 4.59316 4.68636 4.73544 4.85479 4.89880 4.95670 5.04864 5.06529 5.10721 5.16742 5.30812 5.37931 5.44199 5.62812 5.64448 6.03313 6.11989 6.17969 6.48606 6.74811 6.91304 7.37342 8.89013 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061230 B = 0.006415 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.181589 B = 4363.780120 C = 4595.717081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 H 0.067 0.933 4 C 0.065 3.935 5 N -0.545 5.545 6 C 0.025 3.975 7 C 0.067 3.933 8 C -0.139 4.139 9 C 0.089 3.911 10 H 0.040 0.960 11 N -0.679 5.679 12 C 0.212 3.788 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.974 3.026 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.265 1.265 21 H 0.060 0.940 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.025 0.975 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.335 0.665 34 H -0.008 1.008 35 H -0.039 1.039 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 -3.603 15.233 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 H 0.085 0.915 4 C -0.063 4.063 5 N -0.269 5.269 6 C -0.122 4.122 7 C -0.062 4.062 8 C -0.178 4.178 9 C -0.022 4.022 10 H 0.059 0.941 11 N -0.309 5.309 12 C 0.084 3.916 13 C -0.575 4.575 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.798 3.202 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.190 1.190 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.010 0.990 35 H -0.021 1.021 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.743 -3.023 15.219 16.225 hybrid contribution 0.978 -0.684 -1.255 1.731 sum -3.765 -3.706 13.964 14.930 Atomic orbital electron populations 1.21588 0.93729 1.01939 1.01015 1.21104 0.97650 0.98283 0.92146 0.91477 1.22126 0.96782 0.88935 0.98475 1.61924 1.59914 1.02284 1.02813 1.22413 0.98704 0.99897 0.91228 1.21952 0.96481 0.97981 0.89767 1.22232 1.01933 0.96683 0.96949 1.21630 0.97212 0.91879 0.91472 0.94116 1.60647 1.05516 1.61019 1.03669 1.19170 0.91918 0.92399 0.88126 1.21541 1.09161 1.32614 0.94145 0.91748 1.25971 0.95219 0.96060 1.02468 1.70094 1.18136 1.42851 1.26494 0.85367 0.78359 0.78998 0.77456 1.19325 1.20783 1.19015 0.92056 0.93735 0.92082 0.95704 0.88776 0.90057 0.90568 0.95809 0.95820 0.89558 0.93869 0.90510 0.84728 0.98972 1.02131 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.44 71.98 0.61 -2.82 16 2 C -0.07 -2.16 2.94 -10.74 -0.03 -2.19 16 3 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.07 1.60 4.90 86.32 0.42 2.02 16 5 N -0.54 -12.90 4.19 -922.60 -3.87 -16.77 16 6 C 0.03 0.45 9.59 127.69 1.22 1.67 16 7 C 0.07 1.78 5.46 86.33 0.47 2.25 16 8 C -0.14 -4.54 4.99 30.64 0.15 -4.39 16 9 C 0.09 3.27 2.24 44.99 0.10 3.37 16 10 H 0.04 1.68 7.80 -2.39 -0.02 1.66 16 11 N -0.68 -30.13 5.69 -495.16 -2.82 -32.95 16 12 C 0.21 11.71 5.24 85.56 0.45 12.16 16 13 C -0.54 -31.31 9.32 25.60 0.24 -31.07 16 14 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 15 C 0.00 0.05 5.46 84.66 0.46 0.51 16 16 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 17 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.04 1.34 7.19 -2.39 -0.02 1.32 16 23 H 0.06 1.67 6.01 -2.39 -0.01 1.66 16 24 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.09 1.92 8.12 -2.39 -0.02 1.90 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 28 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 31 H 0.04 1.60 7.54 -2.39 -0.02 1.58 16 32 H 0.08 2.43 6.54 -2.39 -0.02 2.41 16 33 H 0.33 14.23 7.68 -89.69 -0.69 13.54 16 34 H -0.01 -0.48 8.06 -2.39 -0.02 -0.50 16 35 H -0.04 -2.30 7.51 -2.39 -0.02 -2.32 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -63.97 280.22 0.06 -63.91 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.34 Total: 14.69 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 4.10 Total: -18.49 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -6.40 Total: -107.06 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -63.97 0.06 -63.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253305611.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.932 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds