Wall clock time and date at job start Mon Mar 30 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.47045 * 2 1 4 4 C 1.46844 * 110.99501 * 66.04901 * 3 2 1 5 5 C 1.53041 * 109.52527 * 174.15932 * 4 3 2 6 6 C 1.53119 * 109.27287 * 59.17784 * 5 4 3 7 7 C 1.53122 * 109.16395 * 302.34798 * 6 5 4 8 8 H 1.09005 * 109.50261 * 297.71555 * 7 6 5 9 9 N 1.46498 * 109.50358 * 177.63913 * 7 6 5 10 10 C 1.46498 * 120.00107 * 299.99812 * 9 7 6 11 11 C 1.36935 * 120.00138 * 120.00051 * 9 7 6 12 12 H 1.08003 * 120.00036 * 23.14706 * 11 9 7 13 13 C 1.38808 * 120.00420 * 203.14526 * 11 9 7 14 14 N 1.31628 * 119.99808 * 11.66779 * 13 11 9 15 15 Si 1.86799 * 120.00556 * 191.66365 * 13 11 9 16 16 H 1.48501 * 109.46996 * 90.00035 * 15 13 11 17 17 H 1.48495 * 109.47544 * 209.99735 * 15 13 11 18 18 H 1.48501 * 109.47016 * 330.00559 * 15 13 11 19 19 C 1.46840 * 110.99984 * 301.83886 * 3 2 1 20 20 H 1.08993 * 109.47141 * 59.99941 * 1 2 3 21 21 H 1.09004 * 109.46501 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46832 * 299.99596 * 1 2 3 23 23 H 1.09004 * 109.46886 * 240.00536 * 2 1 3 24 24 H 1.08997 * 109.47723 * 120.00500 * 2 1 3 25 25 H 1.09002 * 109.46346 * 294.17165 * 4 3 2 26 26 H 1.09006 * 109.46805 * 54.14648 * 4 3 2 27 27 H 1.08993 * 109.50599 * 179.12045 * 5 4 3 28 28 H 1.08997 * 109.49864 * 299.24317 * 5 4 3 29 29 H 1.08994 * 109.52542 * 62.25537 * 6 5 4 30 30 H 1.09002 * 109.51968 * 182.38080 * 6 5 4 31 31 H 1.09001 * 109.47274 * 93.92291 * 10 9 7 32 32 H 1.08998 * 109.47410 * 213.92635 * 10 9 7 33 33 H 1.08998 * 109.46904 * 333.92361 * 10 9 7 34 34 H 0.96997 * 119.99991 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.46870 * 305.85134 * 19 3 2 36 36 H 1.09002 * 109.46471 * 65.82550 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0666 1.2529 5 6 2.3184 3.4527 1.2791 6 6 1.8233 4.2649 0.0791 7 6 2.1566 3.5100 -1.2107 8 1 3.2378 3.4070 -1.3030 9 7 1.6362 4.2534 -2.3608 10 6 0.2003 4.5228 -2.4701 11 6 2.4918 4.6963 -3.3339 12 1 3.4471 4.2123 -3.4742 13 6 2.1315 5.7674 -4.1399 14 7 1.0838 6.5013 -3.8297 15 14 3.1335 6.1674 -5.6649 16 1 2.5816 5.4272 -6.8280 17 1 3.0687 7.6269 -5.9311 18 1 4.5467 5.7660 -5.4480 19 6 1.5133 2.1222 -1.1646 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 0.5874 2.1708 1.3200 26 1 2.0318 1.4808 2.0981 27 1 2.0462 3.9644 2.2021 28 1 3.4021 3.3488 1.2259 29 1 0.7445 4.4022 0.1524 30 1 2.3146 5.2379 0.0702 31 1 -0.0187 5.5029 -2.0464 32 1 -0.0936 4.5066 -3.5195 33 1 -0.3550 3.7592 -1.9254 34 1 0.8318 7.2495 -4.3932 35 1 1.7605 1.5769 -2.0754 36 1 0.4310 2.2261 -1.0862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258621552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:01 Heat of formation + Delta-G solvation = 20.283984 kcal Electronic energy + Delta-G solvation = -15116.707224 eV Core-core repulsion = 12829.273878 eV Total energy + Delta-G solvation = -2287.433346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.92035 -35.53197 -33.26043 -31.20843 -29.22475 -28.34239 -25.93372 -24.39267 -23.34662 -21.66989 -20.40661 -18.48888 -16.66169 -15.64878 -14.86274 -14.64492 -14.30854 -13.91612 -13.70928 -13.02111 -12.91524 -12.49159 -12.14862 -11.99593 -11.70630 -11.52931 -11.06346 -10.89162 -10.74003 -10.54529 -10.38174 -10.24096 -10.08689 -9.79639 -9.73477 -9.50409 -8.48464 -7.90398 -6.67501 -5.65683 -3.11631 3.42385 3.48406 3.50013 4.24045 4.58438 5.12754 5.22852 5.31733 5.45505 5.51198 5.53014 5.64546 5.74148 5.78082 5.87871 5.92976 6.06355 6.16069 6.24269 6.34609 6.36471 6.41890 6.59877 6.65138 6.82820 7.08844 7.13412 7.44139 7.48308 7.51475 7.79671 7.87566 8.48168 9.31298 9.95046 10.44435 11.39432 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044469 B = 0.008234 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.502280 B = 3399.533323 C = 3536.159078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 N -0.536 5.536 4 C 0.057 3.943 5 C -0.115 4.115 6 C -0.131 4.131 7 C 0.183 3.817 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.165 3.835 11 C -0.250 4.250 12 H 0.069 0.931 13 C 0.000 4.000 14 N -0.910 5.910 15 Si 0.905 3.095 16 H -0.289 1.289 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.043 3.957 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.041 0.959 33 H -0.005 1.005 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -9.472 8.628 12.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.077 4.077 3 N -0.261 5.261 4 C -0.071 4.071 5 C -0.153 4.153 6 C -0.171 4.171 7 C 0.074 3.926 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.020 3.980 11 C -0.380 4.380 12 H 0.086 0.914 13 C -0.198 4.198 14 N -0.555 5.555 15 Si 0.735 3.265 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.205 1.205 19 C -0.086 4.086 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.206 -9.315 8.474 12.594 hybrid contribution -0.565 0.357 -0.789 1.034 sum -0.771 -8.958 7.684 11.828 Atomic orbital electron populations 1.22437 0.98671 1.01710 1.02294 1.22118 0.92648 0.90794 1.02094 1.62148 1.59435 1.01640 1.02838 1.22054 0.97694 0.95449 0.91859 1.21583 1.00921 0.94487 0.98326 1.22133 1.00433 0.99377 0.95184 1.20281 0.97282 0.88483 0.86551 0.91374 1.43931 1.03308 1.63431 1.21138 1.20733 0.82666 0.95629 0.98986 1.19264 1.00045 1.09793 1.08888 0.91360 1.25027 0.98399 0.96082 1.00322 1.70075 1.28079 1.19161 1.38221 0.86244 0.79750 0.77150 0.83354 1.21619 1.21823 1.20486 1.22730 0.97496 0.96573 0.91789 0.92093 0.92635 0.92795 0.90962 0.91372 0.95240 0.91755 0.92469 0.91539 0.93108 0.91946 0.95451 0.93995 0.98681 0.93883 0.91279 0.94946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 9.21 37.16 0.34 -2.02 16 2 C 0.05 0.68 6.08 -3.82 -0.02 0.65 16 3 N -0.54 -8.47 4.86 -234.67 -1.14 -9.61 16 4 C 0.06 0.83 5.05 -3.83 -0.02 0.81 16 5 C -0.11 -1.77 6.09 -26.65 -0.16 -1.93 16 6 C -0.13 -2.54 5.32 -26.61 -0.14 -2.68 16 7 C 0.18 3.91 2.75 -67.85 -0.19 3.72 16 8 H 0.07 1.53 7.87 -51.93 -0.41 1.13 16 9 N -0.60 -15.29 2.82 -173.39 -0.49 -15.78 16 10 C 0.16 4.16 7.97 59.85 0.48 4.64 16 11 C -0.25 -7.02 9.59 -15.06 -0.14 -7.17 16 12 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 13 C 0.00 -0.01 5.12 -17.43 -0.09 -0.10 16 14 N -0.91 -27.00 10.65 55.49 0.59 -26.40 16 15 Si 0.90 22.26 29.57 -169.99 -5.03 17.23 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.04 0.81 4.12 -3.84 -0.02 0.79 16 20 H 0.06 0.84 6.51 -51.93 -0.34 0.51 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.66 6.68 -51.93 -0.35 0.31 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 25 H 0.03 0.43 6.75 -51.93 -0.35 0.08 16 26 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.01 7.60 -51.93 -0.39 0.61 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.03 0.75 7.41 -51.93 -0.38 0.36 16 32 H 0.04 1.14 7.23 -51.93 -0.38 0.76 16 33 H -0.01 -0.12 6.41 -51.93 -0.33 -0.45 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 35 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 36 H 0.03 0.62 5.09 -51.93 -0.26 0.35 16 LS Contribution 273.16 15.07 4.12 4.12 Total: -1.00 -29.34 273.16 -8.03 -37.37 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -6.11 Total: -3.64 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -1.04 Total: -51.79 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.34 -8.03 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258621552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.654 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds