Wall clock time and date at job start Mon Mar 30 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.47045 * 2 1 4 4 C 1.46844 * 110.99501 * 66.04901 * 3 2 1 5 5 C 1.53041 * 109.52527 * 174.15932 * 4 3 2 6 6 C 1.53119 * 109.27287 * 59.17784 * 5 4 3 7 7 C 1.53122 * 109.16395 * 302.34798 * 6 5 4 8 8 H 1.09005 * 109.50261 * 297.71555 * 7 6 5 9 9 N 1.46498 * 109.50358 * 177.63913 * 7 6 5 10 10 C 1.46498 * 120.00107 * 299.99812 * 9 7 6 11 11 C 1.36935 * 120.00138 * 120.00051 * 9 7 6 12 12 H 1.08003 * 120.00036 * 23.14706 * 11 9 7 13 13 C 1.38808 * 120.00420 * 203.14526 * 11 9 7 14 14 N 1.31628 * 119.99808 * 11.66779 * 13 11 9 15 15 Si 1.86799 * 120.00556 * 191.66365 * 13 11 9 16 16 H 1.48501 * 109.46996 * 90.00035 * 15 13 11 17 17 H 1.48495 * 109.47544 * 209.99735 * 15 13 11 18 18 H 1.48501 * 109.47016 * 330.00559 * 15 13 11 19 19 C 1.46840 * 110.99984 * 301.83886 * 3 2 1 20 20 H 1.08993 * 109.47141 * 59.99941 * 1 2 3 21 21 H 1.09004 * 109.46501 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46832 * 299.99596 * 1 2 3 23 23 H 1.09004 * 109.46886 * 240.00536 * 2 1 3 24 24 H 1.08997 * 109.47723 * 120.00500 * 2 1 3 25 25 H 1.09002 * 109.46346 * 294.17165 * 4 3 2 26 26 H 1.09006 * 109.46805 * 54.14648 * 4 3 2 27 27 H 1.08993 * 109.50599 * 179.12045 * 5 4 3 28 28 H 1.08997 * 109.49864 * 299.24317 * 5 4 3 29 29 H 1.08994 * 109.52542 * 62.25537 * 6 5 4 30 30 H 1.09002 * 109.51968 * 182.38080 * 6 5 4 31 31 H 1.09001 * 109.47274 * 93.92291 * 10 9 7 32 32 H 1.08998 * 109.47410 * 213.92635 * 10 9 7 33 33 H 1.08998 * 109.46904 * 333.92361 * 10 9 7 34 34 H 0.96997 * 119.99991 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.46870 * 305.85134 * 19 3 2 36 36 H 1.09002 * 109.46471 * 65.82550 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0666 1.2529 5 6 2.3184 3.4527 1.2791 6 6 1.8233 4.2649 0.0791 7 6 2.1566 3.5100 -1.2107 8 1 3.2378 3.4070 -1.3030 9 7 1.6362 4.2534 -2.3608 10 6 0.2003 4.5228 -2.4701 11 6 2.4918 4.6963 -3.3339 12 1 3.4471 4.2123 -3.4742 13 6 2.1315 5.7674 -4.1399 14 7 1.0838 6.5013 -3.8297 15 14 3.1335 6.1674 -5.6649 16 1 2.5816 5.4272 -6.8280 17 1 3.0687 7.6269 -5.9311 18 1 4.5467 5.7660 -5.4480 19 6 1.5133 2.1222 -1.1646 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 0.5874 2.1708 1.3200 26 1 2.0318 1.4808 2.0981 27 1 2.0462 3.9644 2.2021 28 1 3.4021 3.3488 1.2259 29 1 0.7445 4.4022 0.1524 30 1 2.3146 5.2379 0.0702 31 1 -0.0187 5.5029 -2.0464 32 1 -0.0936 4.5066 -3.5195 33 1 -0.3550 3.7592 -1.9254 34 1 0.8318 7.2495 -4.3932 35 1 1.7605 1.5769 -2.0754 36 1 0.4310 2.2261 -1.0862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258621552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:01 Heat of formation + Delta-G solvation = 1.467537 kcal Electronic energy + Delta-G solvation = -15117.523166 eV Core-core repulsion = 12829.273878 eV Total energy + Delta-G solvation = -2288.249288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32015 -37.29760 -34.78280 -33.07093 -30.53462 -29.92165 -28.05325 -25.63955 -25.17771 -23.04402 -21.90754 -20.00976 -18.74482 -17.25524 -16.49882 -16.05545 -15.69293 -15.45813 -15.13453 -14.72563 -14.47966 -14.29817 -13.44414 -13.39178 -13.19184 -12.89226 -12.79794 -12.61625 -12.45875 -12.28212 -12.05536 -12.00772 -11.58162 -11.53355 -11.28595 -11.19271 -10.62351 -9.16613 -8.75702 -7.82173 -5.30825 1.46051 1.47144 1.56372 2.49484 3.02817 3.31005 3.72459 4.03339 4.06254 4.16356 4.21365 4.39705 4.46904 4.49678 4.58358 4.69020 4.78689 4.83293 4.89167 4.96413 5.02879 5.06271 5.18141 5.19235 5.26955 5.33093 5.51022 5.54451 5.64564 5.69632 6.16107 6.30498 6.36628 7.15956 7.88485 8.32724 9.21327 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044469 B = 0.008234 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.502280 B = 3399.533323 C = 3536.159078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.051 3.949 3 N -0.545 5.545 4 C 0.058 3.942 5 C -0.107 4.107 6 C -0.124 4.124 7 C 0.177 3.823 8 H 0.053 0.947 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.262 4.262 12 H 0.068 0.932 13 C -0.055 4.055 14 N -0.940 5.940 15 Si 0.970 3.030 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.269 1.269 19 C 0.062 3.938 20 H 0.038 0.962 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.031 0.969 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.001 0.999 32 H 0.015 0.985 33 H 0.023 0.977 34 H 0.248 0.752 35 H 0.055 0.945 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 -11.078 9.860 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.077 4.077 3 N -0.269 5.269 4 C -0.069 4.069 5 C -0.145 4.145 6 C -0.163 4.163 7 C 0.070 3.930 8 H 0.071 0.929 9 N -0.335 5.335 10 C 0.039 3.961 11 C -0.392 4.392 12 H 0.086 0.914 13 C -0.249 4.249 14 N -0.587 5.587 15 Si 0.799 3.201 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.193 1.193 19 C -0.067 4.067 20 H 0.058 0.942 21 H 0.095 0.905 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.049 0.951 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.298 -10.959 9.737 14.663 hybrid contribution -0.699 0.800 -1.111 1.538 sum -0.402 -10.159 8.626 13.333 Atomic orbital electron populations 1.22376 0.98043 1.02835 1.01316 1.22224 0.93148 0.88980 1.03345 1.62117 1.59736 1.02795 1.02261 1.22125 0.97806 0.94972 0.92029 1.21546 1.00915 0.94825 0.97215 1.21982 0.99695 0.98598 0.96068 1.20446 0.96504 0.89897 0.86134 0.92909 1.44158 1.03186 1.63860 1.22310 1.20407 0.83171 0.95138 0.97340 1.19575 1.00305 1.09687 1.09660 0.91388 1.25809 0.99715 0.96180 1.03231 1.70241 1.29663 1.19606 1.39217 0.85211 0.78771 0.76499 0.79650 1.21276 1.22041 1.19327 1.22321 0.96684 0.94837 0.92885 0.94239 0.90516 0.92525 0.91069 0.88826 0.95094 0.88638 0.89959 0.91464 0.93904 0.94446 0.98075 0.96658 0.95900 0.94325 0.92683 0.95486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.08 9.21 71.98 0.66 -3.41 16 2 C 0.05 1.16 6.08 86.30 0.52 1.69 16 3 N -0.54 -15.89 4.86 -896.36 -4.35 -20.24 16 4 C 0.06 1.49 5.05 86.33 0.44 1.92 16 5 C -0.11 -3.03 6.09 30.65 0.19 -2.85 16 6 C -0.12 -4.74 5.32 30.67 0.16 -4.58 16 7 C 0.18 7.62 2.75 45.04 0.12 7.75 16 8 H 0.05 2.40 7.87 -2.38 -0.02 2.38 16 9 N -0.61 -32.07 2.82 -702.50 -1.98 -34.04 16 10 C 0.18 9.56 7.97 127.77 1.02 10.58 16 11 C -0.26 -14.97 9.59 84.03 0.81 -14.16 16 12 H 0.07 3.80 7.82 -2.91 -0.02 3.78 16 13 C -0.05 -3.16 5.12 84.86 0.43 -2.72 16 14 N -0.94 -57.22 10.65 21.65 0.23 -56.99 16 15 Si 0.97 46.32 29.57 68.60 2.03 48.35 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C 0.06 2.27 4.12 86.33 0.36 2.63 16 20 H 0.04 1.02 6.51 -2.39 -0.02 1.01 16 21 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 22 H 0.06 1.20 6.68 -2.39 -0.02 1.19 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.09 1.72 8.06 -2.39 -0.02 1.70 16 25 H 0.03 0.80 6.75 -2.39 -0.02 0.79 16 26 H 0.10 1.93 8.06 -2.38 -0.02 1.91 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.00 0.06 7.41 -2.39 -0.02 0.04 16 32 H 0.01 0.83 7.23 -2.39 -0.02 0.82 16 33 H 0.02 1.03 6.41 -2.39 -0.02 1.01 16 34 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 36 H 0.03 1.01 5.09 -2.39 -0.01 1.00 16 Total: -1.00 -63.69 273.16 1.66 -62.03 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.03 Total: 4.06 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 4.71 Total: -3.17 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -6.10 Total: -111.28 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -63.69 1.66 -62.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258621552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.495 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds