Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46902 * 109.47474 * 2 1 4 4 C 1.46845 * 110.99992 * 66.04305 * 3 2 1 5 5 C 1.53034 * 109.52445 * 185.84210 * 4 3 2 6 6 C 1.53117 * 109.27848 * 300.82010 * 5 4 3 7 7 C 1.53120 * 109.16117 * 57.65570 * 6 5 4 8 8 H 1.09001 * 109.49920 * 62.32078 * 7 6 5 9 9 N 1.46497 * 109.50543 * 182.40178 * 7 6 5 10 10 C 1.46503 * 119.99915 * 60.00172 * 9 7 6 11 11 C 1.36934 * 120.00184 * 240.00323 * 9 7 6 12 12 H 1.07999 * 120.00332 * 22.02934 * 11 9 7 13 13 C 1.38814 * 119.99863 * 202.03661 * 11 9 7 14 14 N 1.31618 * 120.00030 * 12.55712 * 13 11 9 15 15 Si 1.86799 * 119.99900 * 192.55800 * 13 11 9 16 16 H 1.48503 * 109.46877 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47142 * 119.99578 * 15 13 11 18 18 H 1.48505 * 109.47145 * 239.99740 * 15 13 11 19 19 C 1.46843 * 111.00389 * 190.25593 * 3 2 1 20 20 H 1.09003 * 109.47173 * 59.99931 * 1 2 3 21 21 H 1.09002 * 109.47414 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47632 * 299.99704 * 1 2 3 23 23 H 1.09003 * 109.47652 * 239.99889 * 2 1 3 24 24 H 1.09003 * 109.47173 * 120.00069 * 2 1 3 25 25 H 1.09006 * 109.46013 * 65.82526 * 4 3 2 26 26 H 1.09004 * 109.45296 * 305.85833 * 4 3 2 27 27 H 1.09001 * 109.50131 * 180.88107 * 5 4 3 28 28 H 1.08997 * 109.50524 * 60.76295 * 5 4 3 29 29 H 1.08996 * 109.52308 * 297.75013 * 6 5 4 30 30 H 1.08996 * 109.52148 * 177.56100 * 6 5 4 31 31 H 1.08992 * 109.47227 * 94.31172 * 10 9 7 32 32 H 1.09005 * 109.46890 * 334.31384 * 10 9 7 33 33 H 1.09000 * 109.47337 * 214.31429 * 10 9 7 34 34 H 0.97003 * 120.00250 * 180.02562 * 14 13 11 35 35 H 1.09007 * 109.46254 * 54.14534 * 19 3 2 36 36 H 1.09004 * 109.46562 * 294.17679 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 1.2528 5 6 2.0656 3.5422 1.1596 6 6 3.5714 3.6469 0.9026 7 6 3.9159 2.8880 -0.3819 8 1 3.4028 3.3492 -1.2258 9 7 5.3631 2.9348 -0.6045 10 6 6.2763 2.3727 0.3937 11 6 5.8623 3.5039 -1.7456 12 1 5.2675 4.2154 -2.2990 13 6 7.1329 3.1662 -2.1910 14 7 7.7587 2.1311 -1.6721 15 14 7.9546 4.1808 -3.5270 16 1 7.0478 5.2817 -3.9407 17 1 9.2220 4.7525 -3.0054 18 1 8.2468 3.3146 -4.6973 19 6 3.4669 1.4315 -0.2441 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.2030 1.5996 2.0812 26 1 0.5962 1.9883 1.4215 27 1 1.8204 4.0444 2.0955 28 1 1.5229 4.0133 0.3401 29 1 4.1151 3.2105 1.7404 30 1 3.8500 4.6948 0.7924 31 1 6.5199 1.3449 0.1253 32 1 5.7984 2.3890 1.3733 33 1 7.1900 2.9663 0.4253 34 1 8.6467 1.8953 -1.9831 35 1 3.6979 0.8918 -1.1626 36 1 3.9913 0.9673 0.5913 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258621553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = 19.435621 kcal Electronic energy + Delta-G solvation = -14997.213123 eV Core-core repulsion = 12709.742990 eV Total energy + Delta-G solvation = -2287.470134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.74736 -35.51354 -33.23276 -31.14112 -29.85372 -28.18275 -25.94024 -24.14679 -23.05575 -21.79656 -20.33270 -18.61666 -16.69627 -15.76436 -14.84152 -14.79983 -14.17639 -13.88755 -13.45983 -13.15737 -13.02893 -12.48533 -12.03820 -11.96753 -11.66009 -11.43388 -10.98326 -10.89378 -10.79048 -10.69791 -10.34442 -10.24108 -10.14133 -9.80780 -9.68631 -9.50750 -8.49522 -7.90132 -6.69729 -5.66568 -3.11593 3.41357 3.48413 3.50851 4.23231 4.57370 5.12732 5.28786 5.34093 5.45600 5.51211 5.57989 5.67696 5.70023 5.80137 5.91139 6.00158 6.12554 6.16730 6.24118 6.30397 6.35245 6.43198 6.56745 6.58640 6.82776 7.05901 7.09273 7.43909 7.52565 7.57393 7.77950 7.87255 8.46560 9.30276 9.94371 10.43358 11.38417 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044266 B = 0.007938 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.384111 B = 3526.502826 C = 3696.255334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.056 3.944 5 C -0.113 4.113 6 C -0.134 4.134 7 C 0.183 3.817 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.164 3.836 11 C -0.249 4.249 12 H 0.070 0.930 13 C -0.001 4.001 14 N -0.910 5.910 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.291 1.291 19 C 0.047 3.953 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.026 0.974 32 H -0.003 1.003 33 H 0.042 0.958 34 H 0.251 0.749 35 H 0.072 0.928 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.381 -1.544 5.560 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.072 4.072 5 C -0.151 4.151 6 C -0.173 4.173 7 C 0.075 3.925 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.019 3.981 11 C -0.379 4.379 12 H 0.087 0.913 13 C -0.199 4.199 14 N -0.556 5.556 15 Si 0.734 3.266 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.218 1.218 19 C -0.082 4.082 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.015 0.985 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.408 -1.353 5.129 12.581 hybrid contribution 1.038 -0.116 -0.024 1.045 sum -10.370 -1.469 5.104 11.651 Atomic orbital electron populations 1.21797 0.95446 1.00927 1.02233 1.22033 0.95495 0.89817 1.00473 1.62014 1.15782 1.14594 1.34024 1.22086 0.99708 0.95073 0.90299 1.21545 0.97394 0.95175 1.00994 1.22119 0.94054 1.01169 0.99987 1.20302 0.85403 0.91590 0.95253 0.91305 1.43987 0.98889 1.68818 1.20095 1.20743 0.92173 0.98180 0.86989 1.19309 0.99493 1.17416 1.01681 0.91271 1.25013 0.99032 0.97067 0.98777 1.70089 1.14226 1.26222 1.45028 0.86182 0.79353 0.79607 0.81419 1.20318 1.21715 1.21812 1.22794 0.84582 1.00709 1.00165 0.91945 0.92834 0.92933 0.90985 0.95575 0.95666 0.91378 0.92429 0.91476 0.92867 0.92126 0.95571 0.98491 0.93898 0.93919 0.90971 0.95692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.85 37.15 0.37 -1.31 16 2 C 0.05 0.71 5.68 -3.83 -0.02 0.69 16 3 N -0.54 -8.89 4.65 -234.67 -1.09 -9.98 16 4 C 0.06 0.83 5.29 -3.84 -0.02 0.81 16 5 C -0.11 -1.68 6.09 -26.65 -0.16 -1.84 16 6 C -0.13 -2.45 5.31 -26.61 -0.14 -2.59 16 7 C 0.18 3.93 2.75 -67.85 -0.19 3.74 16 8 H 0.07 1.55 7.86 -51.93 -0.41 1.14 16 9 N -0.60 -15.31 2.82 -173.39 -0.49 -15.80 16 10 C 0.16 4.15 7.98 59.85 0.48 4.63 16 11 C -0.25 -7.00 9.60 -15.06 -0.14 -7.14 16 12 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 13 C 0.00 -0.03 5.11 -17.43 -0.09 -0.12 16 14 N -0.91 -27.00 10.63 55.49 0.59 -26.41 16 15 Si 0.90 22.23 29.57 -169.99 -5.03 17.20 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 C 0.05 0.93 4.75 -3.84 -0.02 0.91 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.57 6.44 -51.93 -0.33 0.23 16 23 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 24 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.87 6.22 -51.93 -0.32 0.54 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.00 6.59 -51.93 -0.34 0.65 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.71 7.41 -51.93 -0.39 0.33 16 32 H 0.00 -0.08 6.40 -51.93 -0.33 -0.41 16 33 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 34 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.07 1.57 8.01 -51.93 -0.42 1.15 16 36 H 0.02 0.51 7.64 -51.93 -0.40 0.12 16 LS Contribution 276.27 15.07 4.16 4.16 Total: -1.00 -29.41 276.27 -8.02 -37.43 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -6.23 Total: -4.38 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 0.06 Total: -2.23 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.99 Total: -52.19 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.41 -8.02 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258621553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.865 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds