Wall clock time and date at job start Mon Mar 30 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46902 * 109.47474 * 2 1 4 4 C 1.46845 * 110.99992 * 66.04305 * 3 2 1 5 5 C 1.53034 * 109.52445 * 185.84210 * 4 3 2 6 6 C 1.53117 * 109.27848 * 300.82010 * 5 4 3 7 7 C 1.53120 * 109.16117 * 57.65570 * 6 5 4 8 8 H 1.09001 * 109.49920 * 62.32078 * 7 6 5 9 9 N 1.46497 * 109.50543 * 182.40178 * 7 6 5 10 10 C 1.46503 * 119.99915 * 60.00172 * 9 7 6 11 11 C 1.36934 * 120.00184 * 240.00323 * 9 7 6 12 12 H 1.07999 * 120.00332 * 22.02934 * 11 9 7 13 13 C 1.38814 * 119.99863 * 202.03661 * 11 9 7 14 14 N 1.31618 * 120.00030 * 12.55712 * 13 11 9 15 15 Si 1.86799 * 119.99900 * 192.55800 * 13 11 9 16 16 H 1.48503 * 109.46877 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47142 * 119.99578 * 15 13 11 18 18 H 1.48505 * 109.47145 * 239.99740 * 15 13 11 19 19 C 1.46843 * 111.00389 * 190.25593 * 3 2 1 20 20 H 1.09003 * 109.47173 * 59.99931 * 1 2 3 21 21 H 1.09002 * 109.47414 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47632 * 299.99704 * 1 2 3 23 23 H 1.09003 * 109.47652 * 239.99889 * 2 1 3 24 24 H 1.09003 * 109.47173 * 120.00069 * 2 1 3 25 25 H 1.09006 * 109.46013 * 65.82526 * 4 3 2 26 26 H 1.09004 * 109.45296 * 305.85833 * 4 3 2 27 27 H 1.09001 * 109.50131 * 180.88107 * 5 4 3 28 28 H 1.08997 * 109.50524 * 60.76295 * 5 4 3 29 29 H 1.08996 * 109.52308 * 297.75013 * 6 5 4 30 30 H 1.08996 * 109.52148 * 177.56100 * 6 5 4 31 31 H 1.08992 * 109.47227 * 94.31172 * 10 9 7 32 32 H 1.09005 * 109.46890 * 334.31384 * 10 9 7 33 33 H 1.09000 * 109.47337 * 214.31429 * 10 9 7 34 34 H 0.97003 * 120.00250 * 180.02562 * 14 13 11 35 35 H 1.09007 * 109.46254 * 54.14534 * 19 3 2 36 36 H 1.09004 * 109.46562 * 294.17679 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 1.2528 5 6 2.0656 3.5422 1.1596 6 6 3.5714 3.6469 0.9026 7 6 3.9159 2.8880 -0.3819 8 1 3.4028 3.3492 -1.2258 9 7 5.3631 2.9348 -0.6045 10 6 6.2763 2.3727 0.3937 11 6 5.8623 3.5039 -1.7456 12 1 5.2675 4.2154 -2.2990 13 6 7.1329 3.1662 -2.1910 14 7 7.7587 2.1311 -1.6721 15 14 7.9546 4.1808 -3.5270 16 1 7.0478 5.2817 -3.9407 17 1 9.2220 4.7525 -3.0054 18 1 8.2468 3.3146 -4.6973 19 6 3.4669 1.4315 -0.2441 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.2030 1.5996 2.0812 26 1 0.5962 1.9883 1.4215 27 1 1.8204 4.0444 2.0955 28 1 1.5229 4.0133 0.3401 29 1 4.1151 3.2105 1.7404 30 1 3.8500 4.6948 0.7924 31 1 6.5199 1.3449 0.1253 32 1 5.7984 2.3890 1.3733 33 1 7.1900 2.9663 0.4253 34 1 8.6467 1.8953 -1.9831 35 1 3.6979 0.8918 -1.1626 36 1 3.9913 0.9673 0.5913 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258621553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:03 Heat of formation + Delta-G solvation = 0.809121 kcal Electronic energy + Delta-G solvation = -14998.020829 eV Core-core repulsion = 12709.742990 eV Total energy + Delta-G solvation = -2288.277839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.19897 -37.27888 -34.76299 -32.98313 -31.16140 -29.78267 -28.05924 -25.57001 -24.76181 -23.22247 -21.71669 -20.21716 -18.77584 -17.28172 -16.65136 -16.11765 -15.70972 -15.43591 -15.04424 -14.74159 -14.45524 -14.21251 -13.76232 -13.37160 -12.90305 -12.85676 -12.68769 -12.60541 -12.46144 -12.20721 -12.06247 -12.00573 -11.86284 -11.41790 -11.31557 -11.14110 -10.62772 -9.24265 -8.78593 -7.82771 -5.30743 1.45877 1.46483 1.57758 2.49333 2.95479 3.31169 3.70814 4.01724 4.04889 4.14790 4.23774 4.36174 4.46467 4.57648 4.65169 4.68650 4.69452 4.85273 4.90285 4.94733 5.08417 5.11005 5.16187 5.19134 5.25925 5.38499 5.47356 5.57601 5.63994 5.68339 6.14322 6.27865 6.34659 7.15117 7.87830 8.31772 9.20781 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044266 B = 0.007938 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.384111 B = 3526.502826 C = 3696.255334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.046 3.954 3 N -0.544 5.544 4 C 0.055 3.945 5 C -0.105 4.105 6 C -0.125 4.125 7 C 0.178 3.822 8 H 0.054 0.946 9 N -0.612 5.612 10 C 0.183 3.817 11 C -0.261 4.261 12 H 0.070 0.930 13 C -0.055 4.055 14 N -0.941 5.941 15 Si 0.971 3.029 16 H -0.266 1.266 17 H -0.290 1.290 18 H -0.292 1.292 19 C 0.064 3.936 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.025 0.975 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.053 0.947 31 H -0.001 1.001 32 H 0.025 0.975 33 H 0.016 0.984 34 H 0.248 0.752 35 H 0.042 0.958 36 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 -0.977 6.242 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 N -0.270 5.270 4 C -0.072 4.072 5 C -0.143 4.143 6 C -0.164 4.164 7 C 0.071 3.929 8 H 0.073 0.927 9 N -0.335 5.335 10 C 0.038 3.962 11 C -0.392 4.392 12 H 0.088 0.912 13 C -0.250 4.250 14 N -0.588 5.588 15 Si 0.799 3.201 16 H -0.190 1.190 17 H -0.217 1.217 18 H -0.219 1.219 19 C -0.066 4.066 20 H 0.076 0.924 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.017 0.983 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -13.405 -0.780 5.823 14.636 hybrid contribution 1.571 -0.315 -0.215 1.616 sum -11.834 -1.096 5.608 13.141 Atomic orbital electron populations 1.21737 0.92779 1.02414 1.02551 1.22143 0.97576 0.88297 1.00172 1.62006 1.12949 1.16417 1.35605 1.22209 1.01494 0.94439 0.89108 1.21531 0.94295 0.95845 1.02660 1.21980 0.96877 0.99935 0.97622 1.20468 0.82963 0.92955 0.96496 0.92727 1.44216 1.00783 1.68856 1.19629 1.20424 0.91528 0.95935 0.88294 1.19629 0.99860 1.17421 1.02250 0.91227 1.25801 0.99697 0.98228 1.01275 1.70253 1.14292 1.27732 1.46568 0.85147 0.78198 0.78255 0.78522 1.19047 1.21672 1.21909 1.22383 0.87109 0.98795 0.98323 0.92350 0.90865 0.91769 0.92039 0.95251 0.95670 0.88384 0.89324 0.91290 0.93272 0.92791 0.98291 0.95633 0.96514 0.94321 0.93898 0.96833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.85 71.98 0.71 -2.00 16 2 C 0.05 1.22 5.68 86.30 0.49 1.71 16 3 N -0.54 -17.13 4.65 -896.36 -4.17 -21.30 16 4 C 0.05 1.43 5.29 86.32 0.46 1.89 16 5 C -0.11 -2.80 6.09 30.64 0.19 -2.62 16 6 C -0.12 -4.39 5.31 30.67 0.16 -4.23 16 7 C 0.18 7.67 2.75 45.04 0.12 7.79 16 8 H 0.05 2.48 7.86 -2.39 -0.02 2.46 16 9 N -0.61 -32.04 2.82 -702.49 -1.98 -34.02 16 10 C 0.18 9.51 7.98 127.77 1.02 10.52 16 11 C -0.26 -14.91 9.60 84.03 0.81 -14.11 16 12 H 0.07 3.88 7.81 -2.91 -0.02 3.85 16 13 C -0.06 -3.20 5.11 84.86 0.43 -2.77 16 14 N -0.94 -57.33 10.63 21.65 0.23 -57.10 16 15 Si 0.97 46.26 29.57 68.60 2.03 48.29 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 19 C 0.06 2.55 4.75 86.33 0.41 2.96 16 20 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 1.12 6.44 -2.39 -0.02 1.11 16 23 H 0.06 1.74 7.98 -2.39 -0.02 1.72 16 24 H 0.03 0.76 8.12 -2.39 -0.02 0.75 16 25 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.10 2.04 6.22 -2.38 -0.01 2.03 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.76 6.59 -2.39 -0.02 1.74 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.00 -0.07 7.41 -2.39 -0.02 -0.09 16 32 H 0.03 1.15 6.40 -2.38 -0.02 1.13 16 33 H 0.02 0.91 7.21 -2.39 -0.02 0.90 16 34 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.04 1.92 8.01 -2.38 -0.02 1.90 16 36 H 0.01 0.56 7.64 -2.39 -0.02 0.54 16 Total: -1.00 -63.92 276.27 1.93 -61.99 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.02 Total: 2.98 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 4.80 Total: -0.85 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -5.92 Total: -112.42 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -63.92 1.93 -61.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258621553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.800 kcal (2) G-P(sol) polarization free energy of solvation -63.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds