Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46086 * 2 1 4 4 C 1.53042 * 109.45737 * 240.03897 * 2 1 3 5 5 C 1.53122 * 109.27697 * 180.80446 * 4 2 1 6 6 H 1.09009 * 109.52267 * 297.74579 * 5 4 2 7 7 N 1.46500 * 109.52170 * 177.56031 * 5 4 2 8 8 C 1.46504 * 119.99573 * 299.99194 * 7 5 4 9 9 C 1.36939 * 120.00181 * 120.00204 * 7 5 4 10 10 H 1.07999 * 120.00211 * 23.26092 * 9 7 5 11 11 C 1.38808 * 119.99545 * 203.26528 * 9 7 5 12 12 N 1.31619 * 120.00603 * 11.64354 * 11 9 7 13 13 Si 1.86807 * 119.99694 * 191.64650 * 11 9 7 14 14 H 1.48497 * 109.46998 * 89.99795 * 13 11 9 15 15 H 1.48504 * 109.47148 * 209.99833 * 13 11 9 16 16 H 1.48500 * 109.46906 * 329.99880 * 13 11 9 17 17 C 1.53112 * 109.16381 * 57.65067 * 5 4 2 18 18 C 1.53045 * 109.27958 * 302.34816 * 17 5 4 19 19 N 1.46839 * 109.46745 * 119.98458 * 2 1 3 20 20 C 1.46903 * 111.00087 * 305.84931 * 19 2 1 21 21 H 1.09004 * 109.46543 * 300.01781 * 1 2 3 22 22 H 1.08998 * 109.47862 * 60.01614 * 1 2 3 23 23 H 1.09001 * 109.46947 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.50115 * 300.73911 * 4 2 1 25 25 H 1.08997 * 109.50465 * 60.82191 * 4 2 1 26 26 H 1.08999 * 109.46567 * 94.03018 * 8 7 5 27 27 H 1.09003 * 109.46773 * 214.02367 * 8 7 5 28 28 H 1.08993 * 109.47359 * 334.02324 * 8 7 5 29 29 H 0.97001 * 119.99890 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.50381 * 62.28891 * 17 5 4 31 31 H 1.08997 * 109.50578 * 182.37042 * 17 5 4 32 32 H 1.09005 * 109.45948 * 299.16225 * 18 17 5 33 33 H 1.09001 * 109.46263 * 179.19875 * 18 17 5 34 34 H 1.09004 * 109.46531 * 59.99908 * 20 19 2 35 35 H 1.08998 * 109.47143 * 179.97438 * 20 19 2 36 36 H 1.08997 * 109.47202 * 300.00315 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7207 -1.2502 5 6 3.5708 -0.7359 -1.2359 6 1 3.9456 0.2873 -1.2674 7 7 4.0639 -1.4752 -2.4006 8 6 3.6986 -2.8821 -2.5835 9 6 4.8665 -0.8513 -3.3181 10 1 5.4384 0.0190 -3.0321 11 6 4.9447 -1.3374 -4.6160 12 7 4.0872 -2.2454 -5.0315 13 14 6.2671 -0.7030 -5.7728 14 1 7.4815 -1.5484 -5.6475 15 1 5.7690 -0.7562 -7.1708 16 1 6.6021 0.7000 -5.4197 17 6 4.0548 -1.4188 0.0462 18 6 3.4865 -0.6778 1.2588 19 7 2.0193 -0.6919 1.1992 20 6 1.4375 -0.1109 2.4165 21 1 -0.3632 0.5141 0.8899 22 1 -0.3635 0.5135 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.6658 -1.7444 -1.2579 25 1 1.6887 -0.1982 -2.1400 26 1 2.8174 -2.9486 -3.2215 27 1 4.5268 -3.4146 -3.0511 28 1 3.4800 -3.3297 -1.6140 29 1 4.1417 -2.5848 -5.9386 30 1 3.7125 -2.4535 0.0588 31 1 5.1439 -1.3952 0.0823 32 1 3.8404 0.3531 1.2530 33 1 3.8177 -1.1702 2.1732 34 1 0.3519 -0.2015 2.3792 35 1 1.8164 -0.6422 3.2896 36 1 1.7121 0.9418 2.4838 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259552681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = 22.338817 kcal Electronic energy + Delta-G solvation = -15085.774615 eV Core-core repulsion = 12798.430374 eV Total energy + Delta-G solvation = -2287.344242 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.95483 -35.56022 -32.39632 -31.99519 -29.88221 -26.71999 -25.90647 -25.71618 -22.94820 -21.94714 -20.01624 -18.68520 -16.62544 -15.47453 -15.11604 -14.79140 -14.25483 -13.88753 -13.70851 -13.00789 -12.47838 -12.28823 -12.09594 -11.85134 -11.68391 -11.46230 -11.23786 -10.92197 -10.79530 -10.55853 -10.44968 -10.22122 -10.10312 -9.82638 -9.68281 -9.39099 -8.46826 -8.02973 -6.64119 -5.64246 -3.10282 3.41919 3.47861 3.49247 4.18864 4.54440 5.18967 5.25379 5.32494 5.45681 5.52643 5.56892 5.66617 5.73846 5.78367 5.88386 6.01248 6.08412 6.13772 6.23280 6.35512 6.41087 6.44472 6.64695 6.74532 6.90721 7.08513 7.17345 7.41553 7.45491 7.51736 7.83251 7.88827 8.49193 9.32869 9.96951 10.47243 11.40299 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051155 B = 0.007926 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.222274 B = 3532.018326 C = 3659.000259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.034 0.966 4 C -0.120 4.120 5 C 0.178 3.822 6 H 0.055 0.945 7 N -0.597 5.597 8 C 0.165 3.835 9 C -0.252 4.252 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.908 5.908 13 Si 0.903 3.097 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.280 1.280 17 C -0.130 4.130 18 C 0.062 3.938 19 N -0.538 5.538 20 C 0.023 3.977 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.000 1.000 29 H 0.251 0.749 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.620 3.354 11.642 12.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 H 0.052 0.948 4 C -0.160 4.160 5 C 0.070 3.930 6 H 0.073 0.927 7 N -0.318 5.318 8 C 0.020 3.980 9 C -0.382 4.382 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.554 5.554 13 Si 0.734 3.266 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.206 1.206 17 C -0.170 4.170 18 C -0.067 4.067 19 N -0.263 5.263 20 C -0.126 4.126 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.019 0.981 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.765 2.775 11.409 12.672 hybrid contribution 0.917 1.138 -0.667 1.607 sum -3.847 3.913 10.742 12.063 Atomic orbital electron populations 1.21911 0.95067 1.02278 1.01016 1.21681 0.94707 0.95293 0.90908 0.94803 1.22187 0.98576 1.00626 0.94620 1.20351 0.91083 0.94691 0.86900 0.92709 1.43938 1.57088 1.07402 1.23397 1.20726 0.99543 0.83631 0.94085 1.19243 1.17649 1.11598 0.89701 0.91618 1.25023 0.98508 0.99640 0.96591 1.70074 1.35787 1.32624 1.16870 0.86270 0.81539 0.78447 0.80377 1.21580 1.21798 1.20602 1.22125 0.99682 1.00624 0.94522 1.22070 0.86786 0.98614 0.99186 1.61955 1.07543 1.54966 1.01864 1.22391 1.00494 0.96831 0.92844 0.93173 0.92324 0.91939 0.91698 0.91786 0.95527 0.94172 0.98136 0.93871 0.91487 0.91960 0.95518 0.91609 0.91301 0.91971 0.96275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.76 37.16 0.33 -1.63 16 2 C 0.08 1.31 2.44 -67.73 -0.17 1.15 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -2.33 4.69 -26.65 -0.13 -2.46 16 5 C 0.18 3.79 2.66 -67.81 -0.18 3.61 16 6 H 0.05 1.20 7.87 -51.92 -0.41 0.79 16 7 N -0.60 -15.37 2.82 -173.34 -0.49 -15.86 16 8 C 0.16 4.20 7.97 59.85 0.48 4.68 16 9 C -0.25 -7.10 9.59 -15.06 -0.14 -7.24 16 10 H 0.07 1.81 7.82 -52.49 -0.41 1.40 16 11 C 0.00 0.01 5.12 -17.43 -0.09 -0.08 16 12 N -0.91 -27.04 10.66 55.49 0.59 -26.45 16 13 Si 0.90 22.26 29.57 -169.99 -5.03 17.24 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C -0.13 -2.39 5.40 -26.65 -0.14 -2.53 16 18 C 0.06 0.95 5.46 -3.83 -0.02 0.93 16 19 N -0.54 -8.16 4.75 -234.92 -1.11 -9.27 16 20 C 0.02 0.27 9.05 60.07 0.54 0.82 16 21 H 0.05 0.58 6.33 -51.93 -0.33 0.25 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.33 7.60 -51.93 -0.39 0.94 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.03 0.73 7.40 -51.93 -0.38 0.35 16 27 H 0.04 1.10 7.25 -51.93 -0.38 0.72 16 28 H 0.00 0.00 6.38 -51.93 -0.33 -0.33 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.07 1.29 6.57 -51.93 -0.34 0.95 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.07 0.76 6.21 -51.93 -0.32 0.44 16 35 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 275.18 15.07 4.15 4.15 Total: -1.00 -29.71 275.18 -7.65 -37.35 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -6.23 Total: -4.40 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 0.48 Total: -2.75 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -1.01 Total: -51.58 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.71 -7.65 -37.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.694 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds