Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46202 * 2 1 4 4 C 1.53036 * 109.46104 * 119.97989 * 2 1 3 5 5 C 1.53099 * 109.28738 * 179.19356 * 4 2 1 6 6 H 1.09003 * 109.52529 * 62.24416 * 5 4 2 7 7 N 1.46500 * 109.52509 * 182.43345 * 5 4 2 8 8 C 1.46505 * 119.99585 * 59.68215 * 7 5 4 9 9 C 1.36931 * 120.00085 * 239.67726 * 7 5 4 10 10 H 1.07994 * 120.00146 * 22.02972 * 9 7 5 11 11 C 1.38817 * 119.99815 * 202.02565 * 9 7 5 12 12 N 1.31614 * 120.00213 * 12.52682 * 11 9 7 13 13 Si 1.86802 * 119.99605 * 192.52359 * 11 9 7 14 14 H 1.48502 * 109.47275 * 60.00617 * 13 11 9 15 15 H 1.48503 * 109.46782 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47471 * 300.00063 * 13 11 9 17 17 C 1.53117 * 109.15596 * 302.33967 * 5 4 2 18 18 C 1.53037 * 109.28133 * 57.65572 * 17 5 4 19 19 N 1.46844 * 109.45952 * 240.02163 * 2 1 3 20 20 C 1.46909 * 111.00226 * 54.15751 * 19 2 1 21 21 H 1.09005 * 109.46754 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46827 * 299.99488 * 1 2 3 23 23 H 1.08999 * 109.47314 * 60.00057 * 1 2 3 24 24 H 1.08993 * 109.50454 * 299.12193 * 4 2 1 25 25 H 1.08998 * 109.50471 * 59.24811 * 4 2 1 26 26 H 1.09003 * 109.46945 * 94.33688 * 8 7 5 27 27 H 1.09004 * 109.46656 * 214.32880 * 8 7 5 28 28 H 1.08994 * 109.47399 * 334.33251 * 8 7 5 29 29 H 0.97000 * 120.00062 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.50629 * 297.71510 * 17 5 4 31 31 H 1.09003 * 109.50337 * 177.59503 * 17 5 4 32 32 H 1.08993 * 109.46772 * 180.80761 * 18 17 5 33 33 H 1.09003 * 109.45498 * 60.82570 * 18 17 5 34 34 H 1.08993 * 109.46673 * 59.99405 * 20 19 2 35 35 H 1.08996 * 109.46988 * 179.97438 * 20 19 2 36 36 H 1.09000 * 109.46267 * 299.99486 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5708 -0.7363 1.2357 6 1 3.9457 0.2867 1.2674 7 7 4.0638 -1.4759 2.4003 8 6 3.6926 -2.8809 2.5866 9 6 4.8717 -0.8541 3.3145 10 1 4.8659 0.2227 3.3960 11 6 5.6980 -1.6080 4.1366 12 7 5.8944 -2.8839 3.8804 13 14 6.5312 -0.8114 5.6065 14 1 5.4993 -0.2750 6.5299 15 1 7.3533 -1.8231 6.3178 16 1 7.4030 0.2969 5.1409 17 6 4.0546 -1.4192 -0.0465 18 6 3.4865 -0.6780 -1.2590 19 7 2.0193 -0.6918 -1.1993 20 6 1.4375 -0.1105 -2.4166 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6898 -0.1983 2.1398 25 1 1.6659 -1.7448 1.2575 26 1 4.4681 -3.5205 2.1652 27 1 3.5873 -3.0907 3.6511 28 1 2.7463 -3.0766 2.0823 29 1 6.4721 -3.4106 4.4547 30 1 3.7122 -2.4539 -0.0594 31 1 5.1438 -1.3952 -0.0829 32 1 3.8175 -1.1702 -2.1734 33 1 3.8405 0.3530 -1.2529 34 1 1.7123 0.9420 -2.4837 35 1 1.8169 -0.6412 -3.2898 36 1 0.3519 -0.2011 -2.3793 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259552683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = 22.835672 kcal Electronic energy + Delta-G solvation = -15076.094947 eV Core-core repulsion = 12788.772250 eV Total energy + Delta-G solvation = -2287.322697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.96516 -35.56178 -32.38450 -32.02352 -29.88353 -26.71830 -25.93500 -25.70404 -22.97991 -21.89997 -20.04769 -18.68622 -16.62613 -15.44332 -15.18839 -14.73719 -14.28942 -13.82461 -13.78981 -12.96420 -12.47593 -12.38727 -12.09298 -11.84743 -11.68182 -11.45829 -11.21572 -10.94920 -10.80145 -10.57881 -10.40764 -10.25851 -10.12680 -9.80241 -9.69268 -9.39905 -8.46057 -8.03148 -6.65302 -5.63920 -3.08657 3.42657 3.47848 3.48885 4.18352 4.54761 5.16338 5.23519 5.31676 5.45764 5.53609 5.54806 5.66508 5.72599 5.80657 5.86390 5.99444 6.08165 6.12810 6.20445 6.33484 6.40254 6.42848 6.64840 6.74278 6.90351 7.08629 7.16716 7.41279 7.45503 7.51916 7.82726 7.89196 8.48833 9.33014 9.97434 10.47238 11.40778 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052558 B = 0.007818 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.619902 B = 3580.640566 C = 3690.318924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.034 0.966 4 C -0.123 4.123 5 C 0.178 3.822 6 H 0.055 0.945 7 N -0.597 5.597 8 C 0.165 3.835 9 C -0.253 4.253 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.909 5.909 13 Si 0.903 3.097 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.284 1.284 17 C -0.128 4.128 18 C 0.060 3.940 19 N -0.538 5.538 20 C 0.023 3.977 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.000 1.000 29 H 0.252 0.748 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.019 0.981 35 H 0.062 0.938 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 4.614 -9.305 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 H 0.052 0.948 4 C -0.162 4.162 5 C 0.070 3.930 6 H 0.073 0.927 7 N -0.318 5.318 8 C 0.021 3.979 9 C -0.382 4.382 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.554 5.554 13 Si 0.734 3.266 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.211 1.211 17 C -0.168 4.168 18 C -0.068 4.068 19 N -0.263 5.263 20 C -0.126 4.126 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.305 3.983 -9.142 12.977 hybrid contribution 0.843 1.179 0.708 1.613 sum -7.462 5.162 -8.434 12.388 Atomic orbital electron populations 1.21915 0.95049 1.02272 1.01039 1.21636 0.94652 0.95294 0.90896 0.94769 1.22157 0.98646 1.00702 0.94733 1.20340 0.91012 0.95007 0.86649 0.92714 1.43939 1.56249 1.09178 1.22472 1.20728 0.93724 0.84533 0.98964 1.19200 1.15847 0.91342 1.11838 0.91637 1.24989 0.98079 0.96223 1.00508 1.70069 1.40160 1.06590 1.38603 0.86353 0.79144 0.78178 0.82962 1.21193 1.21674 1.21070 1.22153 1.00035 1.00343 0.94227 1.22114 0.86541 0.98666 0.99469 1.61962 1.07740 1.54848 1.01779 1.22393 1.00416 0.96852 0.92901 0.91937 0.92386 0.93085 0.91999 0.91456 0.95544 0.94123 0.98138 0.93821 0.91706 0.91745 0.91624 0.95531 0.96278 0.91929 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.77 37.16 0.33 -1.52 16 2 C 0.08 1.29 2.44 -67.72 -0.17 1.12 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -2.26 4.68 -26.66 -0.12 -2.38 16 5 C 0.18 3.80 2.66 -67.82 -0.18 3.62 16 6 H 0.05 1.20 7.86 -51.93 -0.41 0.79 16 7 N -0.60 -15.38 2.82 -173.35 -0.49 -15.87 16 8 C 0.17 4.21 7.96 59.85 0.48 4.69 16 9 C -0.25 -7.12 9.60 -15.06 -0.14 -7.26 16 10 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 11 C 0.00 0.00 5.11 -17.43 -0.09 -0.09 16 12 N -0.91 -27.08 10.63 55.49 0.59 -26.49 16 13 Si 0.90 22.27 29.57 -169.99 -5.03 17.25 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C -0.13 -2.48 5.41 -26.65 -0.14 -2.62 16 18 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 19 N -0.54 -8.15 4.75 -234.92 -1.11 -9.27 16 20 C 0.02 0.27 9.05 60.07 0.54 0.82 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.56 6.32 -51.93 -0.33 0.24 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.07 1.30 6.57 -51.93 -0.34 0.96 16 26 H 0.03 0.73 7.41 -51.93 -0.38 0.34 16 27 H 0.04 1.11 7.21 -51.93 -0.37 0.74 16 28 H 0.00 0.00 6.38 -51.93 -0.33 -0.33 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 1.33 7.60 -51.93 -0.39 0.93 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.07 0.74 6.21 -51.93 -0.32 0.42 16 LS Contribution 275.10 15.07 4.15 4.15 Total: -1.00 -29.72 275.10 -7.65 -37.37 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -6.23 Total: -4.44 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 0.48 Total: -2.69 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -1.01 Total: -51.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.72 -7.65 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.204 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds