Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46202 * 2 1 4 4 C 1.53036 * 109.46104 * 119.97989 * 2 1 3 5 5 C 1.53099 * 109.28738 * 179.19356 * 4 2 1 6 6 H 1.09003 * 109.52529 * 62.24416 * 5 4 2 7 7 N 1.46500 * 109.52509 * 182.43345 * 5 4 2 8 8 C 1.46505 * 119.99585 * 59.68215 * 7 5 4 9 9 C 1.36931 * 120.00085 * 239.67726 * 7 5 4 10 10 H 1.07994 * 120.00146 * 22.02972 * 9 7 5 11 11 C 1.38817 * 119.99815 * 202.02565 * 9 7 5 12 12 N 1.31614 * 120.00213 * 12.52682 * 11 9 7 13 13 Si 1.86802 * 119.99605 * 192.52359 * 11 9 7 14 14 H 1.48502 * 109.47275 * 60.00617 * 13 11 9 15 15 H 1.48503 * 109.46782 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47471 * 300.00063 * 13 11 9 17 17 C 1.53117 * 109.15596 * 302.33967 * 5 4 2 18 18 C 1.53037 * 109.28133 * 57.65572 * 17 5 4 19 19 N 1.46844 * 109.45952 * 240.02163 * 2 1 3 20 20 C 1.46909 * 111.00226 * 54.15751 * 19 2 1 21 21 H 1.09005 * 109.46754 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46827 * 299.99488 * 1 2 3 23 23 H 1.08999 * 109.47314 * 60.00057 * 1 2 3 24 24 H 1.08993 * 109.50454 * 299.12193 * 4 2 1 25 25 H 1.08998 * 109.50471 * 59.24811 * 4 2 1 26 26 H 1.09003 * 109.46945 * 94.33688 * 8 7 5 27 27 H 1.09004 * 109.46656 * 214.32880 * 8 7 5 28 28 H 1.08994 * 109.47399 * 334.33251 * 8 7 5 29 29 H 0.97000 * 120.00062 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.50629 * 297.71510 * 17 5 4 31 31 H 1.09003 * 109.50337 * 177.59503 * 17 5 4 32 32 H 1.08993 * 109.46772 * 180.80761 * 18 17 5 33 33 H 1.09003 * 109.45498 * 60.82570 * 18 17 5 34 34 H 1.08993 * 109.46673 * 59.99405 * 20 19 2 35 35 H 1.08996 * 109.46988 * 179.97438 * 20 19 2 36 36 H 1.09000 * 109.46267 * 299.99486 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5708 -0.7363 1.2357 6 1 3.9457 0.2867 1.2674 7 7 4.0638 -1.4759 2.4003 8 6 3.6926 -2.8809 2.5866 9 6 4.8717 -0.8541 3.3145 10 1 4.8659 0.2227 3.3960 11 6 5.6980 -1.6080 4.1366 12 7 5.8944 -2.8839 3.8804 13 14 6.5312 -0.8114 5.6065 14 1 5.4993 -0.2750 6.5299 15 1 7.3533 -1.8231 6.3178 16 1 7.4030 0.2969 5.1409 17 6 4.0546 -1.4192 -0.0465 18 6 3.4865 -0.6780 -1.2590 19 7 2.0193 -0.6918 -1.1993 20 6 1.4375 -0.1105 -2.4166 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6898 -0.1983 2.1398 25 1 1.6659 -1.7448 1.2575 26 1 4.4681 -3.5205 2.1652 27 1 3.5873 -3.0907 3.6511 28 1 2.7463 -3.0766 2.0823 29 1 6.4721 -3.4106 4.4547 30 1 3.7122 -2.4539 -0.0594 31 1 5.1438 -1.3952 -0.0829 32 1 3.8175 -1.1702 -2.1734 33 1 3.8405 0.3530 -1.2529 34 1 1.7123 0.9420 -2.4837 35 1 1.8169 -0.6412 -3.2898 36 1 0.3519 -0.2011 -2.3793 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259552683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = 3.769682 kcal Electronic energy + Delta-G solvation = -15076.921710 eV Core-core repulsion = 12788.772250 eV Total energy + Delta-G solvation = -2288.149460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34507 -37.35404 -34.21651 -33.27183 -31.73308 -28.10775 -27.97065 -27.00987 -24.68281 -23.39525 -21.47200 -20.27292 -18.72778 -17.04468 -16.60709 -16.26862 -15.71961 -15.49900 -15.15230 -14.74279 -14.20106 -13.94408 -13.52693 -13.02105 -12.93561 -12.91848 -12.74215 -12.67290 -12.44597 -12.38777 -12.15756 -12.08158 -11.86121 -11.51474 -11.33727 -11.07851 -10.59437 -9.19180 -8.75722 -7.81080 -5.28619 1.45192 1.48101 1.54731 2.50857 3.02377 3.31089 3.60688 3.99142 4.06554 4.13275 4.23622 4.42591 4.58189 4.61272 4.67636 4.73248 4.75820 4.83933 4.90632 4.95814 5.01488 5.08824 5.16650 5.21079 5.27561 5.38987 5.47754 5.58193 5.63797 5.72737 6.21283 6.27608 6.35024 7.16579 7.90124 8.34940 9.22044 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052558 B = 0.007818 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.619902 B = 3580.640566 C = 3690.318924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.087 3.913 3 H 0.035 0.965 4 C -0.111 4.111 5 C 0.172 3.828 6 H 0.045 0.955 7 N -0.613 5.613 8 C 0.185 3.815 9 C -0.266 4.266 10 H 0.068 0.932 11 C -0.055 4.055 12 N -0.940 5.940 13 Si 0.970 3.030 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.276 1.276 17 C -0.118 4.118 18 C 0.070 3.930 19 N -0.550 5.550 20 C 0.023 3.977 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.056 0.944 26 H -0.001 1.001 27 H 0.013 0.987 28 H 0.026 0.974 29 H 0.248 0.752 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 5.955 -10.409 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.053 0.947 4 C -0.151 4.151 5 C 0.065 3.935 6 H 0.064 0.936 7 N -0.335 5.335 8 C 0.040 3.960 9 C -0.396 4.396 10 H 0.086 0.914 11 C -0.250 4.250 12 N -0.587 5.587 13 Si 0.798 3.202 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.201 1.201 17 C -0.158 4.158 18 C -0.059 4.059 19 N -0.276 5.276 20 C -0.124 4.124 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.018 0.982 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.527 5.354 -10.280 15.004 hybrid contribution 1.190 0.779 0.999 1.738 sum -8.337 6.133 -9.282 13.902 Atomic orbital electron populations 1.21860 0.92631 1.02549 1.02551 1.21579 0.96493 0.94562 0.89504 0.94725 1.21980 0.96032 1.00496 0.96581 1.20562 0.92950 0.94035 0.85971 0.93619 1.44185 1.56249 1.09287 1.23819 1.20397 0.93963 0.84428 0.97186 1.19556 1.15844 0.91694 1.12503 0.91412 1.25788 0.99125 0.96819 1.03241 1.70244 1.41029 1.07900 1.39531 0.85300 0.78111 0.77265 0.79518 1.20474 1.21943 1.20132 1.21960 0.98807 0.99858 0.95199 1.21976 0.87372 0.98415 0.98120 1.61935 1.07001 1.55658 1.02976 1.22475 1.01181 0.97246 0.91544 0.92251 0.91711 0.90818 0.92661 0.92509 0.98247 0.96777 0.95539 0.94315 0.93086 0.93888 0.89704 0.95089 0.95515 0.90722 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.77 71.98 0.63 -2.44 16 2 C 0.09 2.48 2.44 44.94 0.11 2.59 16 3 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -4.00 4.68 30.64 0.14 -3.86 16 5 C 0.17 7.32 2.66 45.06 0.12 7.44 16 6 H 0.05 2.01 7.86 -2.39 -0.02 1.99 16 7 N -0.61 -32.21 2.82 -702.36 -1.98 -34.19 16 8 C 0.19 9.71 7.96 127.77 1.02 10.73 16 9 C -0.27 -15.19 9.60 84.04 0.81 -14.39 16 10 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 11 C -0.05 -3.18 5.11 84.86 0.43 -2.75 16 12 N -0.94 -57.47 10.63 21.65 0.23 -57.24 16 13 Si 0.97 46.25 29.57 68.60 2.03 48.27 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 15 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 17 C -0.12 -4.59 5.41 30.65 0.17 -4.42 16 18 C 0.07 2.08 5.46 86.32 0.47 2.55 16 19 N -0.55 -15.16 4.75 -897.15 -4.26 -19.42 16 20 C 0.02 0.46 9.05 127.69 1.16 1.62 16 21 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.07 1.32 6.32 -2.39 -0.02 1.30 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 2.15 6.57 -2.39 -0.02 2.13 16 26 H 0.00 -0.04 7.41 -2.39 -0.02 -0.06 16 27 H 0.01 0.77 7.21 -2.38 -0.02 0.76 16 28 H 0.03 1.22 6.38 -2.39 -0.02 1.20 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.05 2.10 7.60 -2.39 -0.02 2.08 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 2.22 8.08 -2.39 -0.02 2.21 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 1.34 8.09 -2.39 -0.02 1.33 16 36 H 0.08 1.45 6.21 -2.39 -0.01 1.44 16 Total: -1.00 -64.15 275.10 2.10 -62.05 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.02 Total: 3.45 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.06 Total: -2.93 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -6.01 Total: -110.85 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -64.15 2.10 -62.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.821 kcal (2) G-P(sol) polarization free energy of solvation -64.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds