Wall clock time and date at job start Mon Mar 30 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.45183 * 2 1 4 4 C 1.53033 * 109.46250 * 119.97613 * 2 1 3 5 5 C 1.53119 * 109.27654 * 179.19549 * 4 2 1 6 6 H 1.08997 * 109.52610 * 182.37407 * 5 4 2 7 7 N 1.46503 * 109.52336 * 62.24865 * 5 4 2 8 8 C 1.46503 * 120.00008 * 208.38512 * 7 5 4 9 9 C 1.36931 * 120.00049 * 28.38988 * 7 5 4 10 10 H 1.08004 * 120.00127 * 19.66787 * 9 7 5 11 11 C 1.38813 * 119.99905 * 199.94417 * 9 7 5 12 12 N 1.31618 * 120.00247 * 17.31101 * 11 9 7 13 13 Si 1.86803 * 120.00059 * 197.30362 * 11 9 7 14 14 H 1.48500 * 109.47251 * 90.00229 * 13 11 9 15 15 H 1.48499 * 109.47076 * 210.00389 * 13 11 9 16 16 H 1.48504 * 109.46959 * 330.00141 * 13 11 9 17 17 C 1.53116 * 109.16173 * 302.34362 * 5 4 2 18 18 C 1.53045 * 109.27909 * 57.65312 * 17 5 4 19 19 N 1.46845 * 109.52172 * 300.82416 * 18 17 5 20 20 C 1.46894 * 110.99711 * 185.83597 * 19 18 17 21 21 H 1.09002 * 109.46763 * 300.02685 * 1 2 3 22 22 H 1.08994 * 109.47296 * 60.02230 * 1 2 3 23 23 H 1.09001 * 109.47209 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.50898 * 59.25226 * 4 2 1 25 25 H 1.09002 * 109.53345 * 299.15227 * 4 2 1 26 26 H 1.08998 * 109.47144 * 205.79549 * 8 7 5 27 27 H 1.09000 * 109.47052 * 325.80105 * 8 7 5 28 28 H 1.09007 * 109.46687 * 85.79494 * 8 7 5 29 29 H 0.96999 * 120.00496 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.50612 * 177.59320 * 17 5 4 31 31 H 1.08998 * 109.50551 * 297.71536 * 17 5 4 32 32 H 1.08990 * 109.46359 * 180.80588 * 18 17 5 33 33 H 1.09001 * 109.45514 * 60.83615 * 18 17 5 34 34 H 1.08995 * 109.47525 * 295.78834 * 20 19 18 35 35 H 1.09000 * 109.47321 * 55.79386 * 20 19 18 36 36 H 1.08999 * 109.47187 * 175.78886 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7360 1.2355 6 1 3.9380 -1.2853 2.1024 7 7 4.0746 0.6390 1.2780 8 6 5.3691 0.9640 0.6738 9 6 3.3355 1.6205 1.8825 10 1 2.5629 1.3566 2.5896 11 6 3.5752 2.9544 1.5821 12 7 4.2488 3.2740 0.4975 13 14 2.9417 4.2959 2.7173 14 1 3.9691 4.6004 3.7454 15 1 2.6554 5.5195 1.9260 16 1 1.6970 3.8342 3.3827 17 6 4.0548 -1.4187 -0.0468 18 6 3.4864 -0.6776 -1.2592 19 7 2.0192 -0.6917 -1.1994 20 6 1.4372 -0.1105 -2.4165 21 1 -0.3633 0.5143 0.8898 22 1 -0.3633 0.5135 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.6660 -1.7447 1.2576 25 1 1.6895 -0.1988 2.1402 26 1 5.7886 1.8425 1.1642 27 1 6.0488 0.1206 0.7954 28 1 5.2329 1.1707 -0.3878 29 1 4.4161 4.2060 0.2874 30 1 5.1439 -1.3946 -0.0833 31 1 3.7125 -2.4535 -0.0596 32 1 3.8174 -1.1698 -2.1737 33 1 3.8403 0.3533 -1.2532 34 1 1.7118 0.9422 -2.4837 35 1 1.8163 -0.6413 -3.2898 36 1 0.3517 -0.2011 -2.3792 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259552686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:34 Heat of formation + Delta-G solvation = 29.974882 kcal Electronic energy + Delta-G solvation = -15763.826643 eV Core-core repulsion = 13476.813526 eV Total energy + Delta-G solvation = -2287.013117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.88553 -35.21927 -32.32325 -31.74299 -29.64520 -27.19265 -25.73937 -25.06585 -22.84705 -21.82295 -20.01609 -18.23896 -16.38611 -15.35839 -14.78908 -14.60636 -14.02822 -13.81865 -13.49680 -13.04601 -12.72969 -11.93275 -11.61600 -11.44308 -11.31078 -11.25205 -11.09933 -10.99656 -10.84279 -10.54165 -10.32852 -10.19608 -9.92025 -9.70149 -9.53995 -9.20623 -8.41384 -7.51612 -6.65907 -5.70386 -3.08009 3.39778 3.47162 3.47439 4.52961 4.64645 5.42358 5.50396 5.57710 5.62226 5.71978 5.91081 6.02767 6.05074 6.11082 6.20080 6.29481 6.37057 6.44040 6.48527 6.58423 6.60917 6.75961 6.84124 6.90655 6.93608 7.05968 7.25935 7.44072 7.73075 7.83051 7.86036 7.89820 8.44362 9.29063 9.94781 10.44304 11.36348 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.013181 C = 0.011603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.906859 B = 2123.701512 C = 2412.507907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.080 0.920 4 C -0.101 4.101 5 C 0.172 3.828 6 H 0.021 0.979 7 N -0.598 5.598 8 C 0.163 3.837 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.002 4.002 12 N -0.907 5.907 13 Si 0.896 3.104 14 H -0.290 1.290 15 H -0.294 1.294 16 H -0.280 1.280 17 C -0.122 4.122 18 C 0.059 3.941 19 N -0.540 5.540 20 C 0.025 3.975 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.056 0.944 27 H -0.007 1.007 28 H 0.016 0.984 29 H 0.250 0.750 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.055 0.945 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 -6.822 -2.629 8.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.140 4.140 5 C 0.065 3.935 6 H 0.038 0.962 7 N -0.323 5.323 8 C 0.018 3.982 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.200 4.200 12 N -0.554 5.554 13 Si 0.727 3.273 14 H -0.217 1.217 15 H -0.220 1.220 16 H -0.206 1.206 17 C -0.161 4.161 18 C -0.069 4.069 19 N -0.266 5.266 20 C -0.123 4.123 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.011 0.989 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.548 -7.152 -2.659 8.415 hybrid contribution -0.043 1.702 0.411 1.751 sum -3.591 -5.450 -2.248 6.903 Atomic orbital electron populations 1.21905 0.96308 1.00932 1.00965 1.21603 0.93082 0.98721 0.89149 0.90222 1.21729 0.96327 0.98603 0.97336 1.20449 0.92442 0.86774 0.93794 0.96202 1.44041 1.18266 1.03182 1.66789 1.20774 0.84861 0.95777 0.96782 1.19137 1.15577 0.85690 1.16615 0.91244 1.24861 1.00921 0.97372 0.96804 1.70091 1.45254 1.16503 1.23506 0.86371 0.78471 0.81986 0.80494 1.21686 1.22021 1.20591 1.21936 0.99579 0.98577 0.96043 1.22045 0.87167 1.00782 0.96895 1.62053 1.07549 1.54820 1.02147 1.22309 0.99812 0.97460 0.92739 0.92683 0.93361 0.93054 0.93196 0.91465 0.92513 0.98867 0.96554 0.93966 0.92153 0.92473 0.93006 0.92286 0.95811 0.92642 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.77 37.16 0.33 -2.10 16 2 C 0.08 1.64 2.21 -67.72 -0.15 1.49 16 3 H 0.08 1.98 6.43 -51.93 -0.33 1.64 16 4 C -0.10 -2.01 4.43 -26.65 -0.12 -2.13 16 5 C 0.17 3.63 3.43 -67.81 -0.23 3.40 16 6 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 7 N -0.60 -14.71 2.52 -173.34 -0.44 -15.15 16 8 C 0.16 3.99 7.54 59.85 0.45 4.44 16 9 C -0.24 -6.39 7.22 -15.06 -0.11 -6.50 16 10 H 0.07 1.83 6.33 -52.48 -0.33 1.50 16 11 C 0.00 -0.05 4.96 -17.43 -0.09 -0.14 16 12 N -0.91 -25.98 10.84 55.49 0.60 -25.38 16 13 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C -0.12 -2.30 5.16 -26.65 -0.14 -2.44 16 18 C 0.06 1.14 5.24 -3.83 -0.02 1.12 16 19 N -0.54 -10.16 4.75 -234.94 -1.12 -11.27 16 20 C 0.03 0.42 9.05 60.06 0.54 0.97 16 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.05 0.77 6.32 -51.93 -0.33 0.44 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.39 6.43 -51.93 -0.33 1.06 16 26 H 0.06 1.52 6.60 -51.93 -0.34 1.18 16 27 H -0.01 -0.16 7.05 -51.93 -0.37 -0.52 16 28 H 0.02 0.42 6.14 -51.92 -0.32 0.10 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.06 1.11 6.61 -51.93 -0.34 0.77 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.06 1.37 5.69 -51.93 -0.30 1.07 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.06 0.96 6.21 -51.93 -0.32 0.63 16 LS Contribution 264.17 15.07 3.98 3.98 Total: -1.00 -28.03 264.17 -7.36 -35.39 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.83 Total: -2.44 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 0.47 Total: -1.90 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.95 Total: -51.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.03 -7.36 -35.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.365 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds