Wall clock time and date at job start Mon Mar 30 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.45183 * 2 1 4 4 C 1.53033 * 109.46250 * 119.97613 * 2 1 3 5 5 C 1.53119 * 109.27654 * 179.19549 * 4 2 1 6 6 H 1.08997 * 109.52610 * 182.37407 * 5 4 2 7 7 N 1.46503 * 109.52336 * 62.24865 * 5 4 2 8 8 C 1.46503 * 120.00008 * 208.38512 * 7 5 4 9 9 C 1.36931 * 120.00049 * 28.38988 * 7 5 4 10 10 H 1.08004 * 120.00127 * 19.66787 * 9 7 5 11 11 C 1.38813 * 119.99905 * 199.94417 * 9 7 5 12 12 N 1.31618 * 120.00247 * 17.31101 * 11 9 7 13 13 Si 1.86803 * 120.00059 * 197.30362 * 11 9 7 14 14 H 1.48500 * 109.47251 * 90.00229 * 13 11 9 15 15 H 1.48499 * 109.47076 * 210.00389 * 13 11 9 16 16 H 1.48504 * 109.46959 * 330.00141 * 13 11 9 17 17 C 1.53116 * 109.16173 * 302.34362 * 5 4 2 18 18 C 1.53045 * 109.27909 * 57.65312 * 17 5 4 19 19 N 1.46845 * 109.52172 * 300.82416 * 18 17 5 20 20 C 1.46894 * 110.99711 * 185.83597 * 19 18 17 21 21 H 1.09002 * 109.46763 * 300.02685 * 1 2 3 22 22 H 1.08994 * 109.47296 * 60.02230 * 1 2 3 23 23 H 1.09001 * 109.47209 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.50898 * 59.25226 * 4 2 1 25 25 H 1.09002 * 109.53345 * 299.15227 * 4 2 1 26 26 H 1.08998 * 109.47144 * 205.79549 * 8 7 5 27 27 H 1.09000 * 109.47052 * 325.80105 * 8 7 5 28 28 H 1.09007 * 109.46687 * 85.79494 * 8 7 5 29 29 H 0.96999 * 120.00496 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.50612 * 177.59320 * 17 5 4 31 31 H 1.08998 * 109.50551 * 297.71536 * 17 5 4 32 32 H 1.08990 * 109.46359 * 180.80588 * 18 17 5 33 33 H 1.09001 * 109.45514 * 60.83615 * 18 17 5 34 34 H 1.08995 * 109.47525 * 295.78834 * 20 19 18 35 35 H 1.09000 * 109.47321 * 55.79386 * 20 19 18 36 36 H 1.08999 * 109.47187 * 175.78886 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7360 1.2355 6 1 3.9380 -1.2853 2.1024 7 7 4.0746 0.6390 1.2780 8 6 5.3691 0.9640 0.6738 9 6 3.3355 1.6205 1.8825 10 1 2.5629 1.3566 2.5896 11 6 3.5752 2.9544 1.5821 12 7 4.2488 3.2740 0.4975 13 14 2.9417 4.2959 2.7173 14 1 3.9691 4.6004 3.7454 15 1 2.6554 5.5195 1.9260 16 1 1.6970 3.8342 3.3827 17 6 4.0548 -1.4187 -0.0468 18 6 3.4864 -0.6776 -1.2592 19 7 2.0192 -0.6917 -1.1994 20 6 1.4372 -0.1105 -2.4165 21 1 -0.3633 0.5143 0.8898 22 1 -0.3633 0.5135 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.6660 -1.7447 1.2576 25 1 1.6895 -0.1988 2.1402 26 1 5.7886 1.8425 1.1642 27 1 6.0488 0.1206 0.7954 28 1 5.2329 1.1707 -0.3878 29 1 4.4161 4.2060 0.2874 30 1 5.1439 -1.3946 -0.0833 31 1 3.7125 -2.4535 -0.0596 32 1 3.8174 -1.1698 -2.1737 33 1 3.8403 0.3533 -1.2532 34 1 1.7118 0.9422 -2.4837 35 1 1.8163 -0.6413 -3.2898 36 1 0.3517 -0.2011 -2.3792 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259552686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:34 Heat of formation + Delta-G solvation = 12.173492 kcal Electronic energy + Delta-G solvation = -15764.598569 eV Core-core repulsion = 13476.813526 eV Total energy + Delta-G solvation = -2287.785043 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49604 -36.99394 -34.16206 -33.27877 -31.52008 -28.84251 -27.42915 -26.76065 -24.64640 -23.46313 -21.62899 -19.95423 -18.38830 -17.09833 -16.44009 -16.20263 -15.77518 -15.49774 -15.22865 -14.73131 -14.42346 -13.49347 -13.37770 -13.06178 -12.92011 -12.86552 -12.74955 -12.71579 -12.45513 -12.28007 -12.21796 -11.99746 -11.65549 -11.52994 -11.15122 -10.85789 -10.47267 -9.12315 -8.66016 -7.78854 -5.17227 1.44168 1.46641 1.53308 2.53389 3.14549 3.35565 3.71200 4.04549 4.09748 4.26356 4.38315 4.57845 4.60411 4.68100 4.75799 4.83224 4.84574 4.91822 4.96295 5.00677 5.04323 5.14385 5.26113 5.30615 5.33225 5.40666 5.48686 5.62125 5.69780 5.78061 6.31766 6.34489 6.38368 7.21554 7.96337 8.40271 9.26529 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.013181 C = 0.011603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.906859 B = 2123.701512 C = 2412.507907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.085 3.915 3 H 0.024 0.976 4 C -0.097 4.097 5 C 0.161 3.839 6 H 0.027 0.973 7 N -0.608 5.608 8 C 0.179 3.821 9 C -0.233 4.233 10 H 0.071 0.929 11 C -0.054 4.054 12 N -0.937 5.937 13 Si 0.952 3.048 14 H -0.291 1.291 15 H -0.301 1.301 16 H -0.269 1.269 17 C -0.114 4.114 18 C 0.062 3.938 19 N -0.533 5.533 20 C 0.026 3.974 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.025 0.975 27 H 0.020 0.980 28 H -0.003 1.003 29 H 0.242 0.758 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.014 0.986 34 H -0.003 1.003 35 H 0.077 0.923 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 -8.756 -2.562 10.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.042 0.958 4 C -0.135 4.135 5 C 0.055 3.945 6 H 0.045 0.955 7 N -0.333 5.333 8 C 0.034 3.966 9 C -0.363 4.363 10 H 0.089 0.911 11 C -0.249 4.249 12 N -0.586 5.586 13 Si 0.782 3.218 14 H -0.218 1.218 15 H -0.228 1.228 16 H -0.194 1.194 17 C -0.153 4.153 18 C -0.066 4.066 19 N -0.258 5.258 20 C -0.122 4.122 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.015 0.985 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.032 0.968 34 H 0.016 0.984 35 H 0.096 0.904 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.686 -9.117 -2.579 10.571 hybrid contribution 0.305 2.226 0.371 2.278 sum -4.381 -6.891 -2.208 8.459 Atomic orbital electron populations 1.21833 0.93789 1.02367 1.01388 1.21463 0.95106 0.95726 0.89996 0.95768 1.21681 0.95316 0.99848 0.96653 1.20707 0.93524 0.84981 0.95285 0.95513 1.44239 1.18239 1.04358 1.66493 1.20498 0.85443 0.95445 0.95207 1.19342 1.14885 0.86250 1.15846 0.91147 1.25492 1.02079 0.99262 0.98042 1.70245 1.47190 1.16048 1.25067 0.85476 0.78255 0.79414 0.78683 1.21832 1.22841 1.19371 1.21865 0.99719 0.99463 0.94231 1.21994 0.87715 0.98486 0.98380 1.62155 1.07036 1.54121 1.02444 1.22398 1.01073 0.96054 0.92692 0.92720 0.92654 0.90936 0.90522 0.92792 0.95569 0.96199 0.98463 0.94842 0.91925 0.89778 0.90700 0.96781 0.98414 0.90413 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.77 71.98 0.63 -3.67 16 2 C 0.09 3.32 2.21 44.94 0.10 3.42 16 3 H 0.02 1.23 6.43 -2.39 -0.02 1.21 16 4 C -0.10 -3.64 4.43 30.65 0.14 -3.51 16 5 C 0.16 6.52 3.43 45.07 0.15 6.68 16 6 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 7 N -0.61 -30.04 2.52 -702.32 -1.77 -31.81 16 8 C 0.18 8.92 7.54 127.77 0.96 9.88 16 9 C -0.23 -12.50 7.22 84.03 0.61 -11.90 16 10 H 0.07 3.72 6.33 -2.91 -0.02 3.70 16 11 C -0.05 -3.04 4.96 84.86 0.42 -2.62 16 12 N -0.94 -55.61 10.84 21.65 0.23 -55.38 16 13 Si 0.95 45.59 29.59 68.60 2.03 47.62 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 C -0.11 -4.02 5.16 30.65 0.16 -3.86 16 18 C 0.06 2.33 5.24 86.33 0.45 2.79 16 19 N -0.53 -18.95 4.75 -897.20 -4.26 -23.21 16 20 C 0.03 0.82 9.05 127.69 1.16 1.98 16 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.05 1.65 6.32 -2.39 -0.02 1.63 16 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.05 2.16 6.43 -2.39 -0.02 2.14 16 26 H 0.03 1.43 6.60 -2.39 -0.02 1.41 16 27 H 0.02 0.86 7.05 -2.39 -0.02 0.84 16 28 H 0.00 -0.15 6.14 -2.38 -0.01 -0.16 16 29 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.06 2.17 6.61 -2.39 -0.02 2.15 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 33 H 0.01 0.66 5.69 -2.39 -0.01 0.65 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 36 H 0.08 2.29 6.21 -2.39 -0.01 2.27 16 Total: -1.00 -60.98 264.17 2.05 -58.93 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.04 Total: 4.67 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 4.78 Total: -0.82 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -5.80 Total: -110.40 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -60.98 2.05 -58.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.104 kcal (2) G-P(sol) polarization free energy of solvation -60.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds