Wall clock time and date at job start Mon Mar 30 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46070 * 2 1 4 4 C 1.53035 * 109.45352 * 240.02279 * 2 1 3 5 5 C 1.53124 * 109.30993 * 180.82959 * 4 2 1 6 6 H 1.08997 * 109.55560 * 177.51894 * 5 4 2 7 7 N 1.46494 * 109.49144 * 297.71295 * 5 4 2 8 8 C 1.46510 * 119.99766 * 180.82201 * 7 5 4 9 9 C 1.36942 * 120.00357 * 0.81884 * 7 5 4 10 10 H 1.07992 * 119.99785 * 326.79407 * 9 7 5 11 11 C 1.38813 * 119.99976 * 146.79127 * 9 7 5 12 12 N 1.31619 * 119.99892 * 167.59232 * 11 9 7 13 13 Si 1.86801 * 119.99990 * 347.58868 * 11 9 7 14 14 H 1.48503 * 109.46863 * 93.85570 * 13 11 9 15 15 H 1.48496 * 109.46999 * 213.85484 * 13 11 9 16 16 H 1.48500 * 109.47127 * 333.85513 * 13 11 9 17 17 C 1.53119 * 109.15480 * 57.59908 * 5 4 2 18 18 C 1.53036 * 109.31166 * 302.40075 * 17 5 4 19 19 N 1.46844 * 109.46178 * 119.97611 * 2 1 3 20 20 C 1.46899 * 111.00099 * 305.84510 * 19 2 1 21 21 H 1.09004 * 109.47087 * 300.02649 * 1 2 3 22 22 H 1.09003 * 109.47141 * 60.02409 * 1 2 3 23 23 H 1.08996 * 109.47356 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.50579 * 300.75302 * 4 2 1 25 25 H 1.09003 * 109.50392 * 60.82949 * 4 2 1 26 26 H 1.08998 * 109.46897 * 60.47918 * 8 7 5 27 27 H 1.09003 * 109.46778 * 180.48630 * 8 7 5 28 28 H 1.08996 * 109.46785 * 300.48025 * 8 7 5 29 29 H 0.97001 * 119.99588 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.49977 * 182.44063 * 17 5 4 31 31 H 1.09002 * 109.50699 * 62.36219 * 17 5 4 32 32 H 1.08996 * 109.46567 * 179.17814 * 18 17 5 33 33 H 1.09000 * 109.46499 * 299.14508 * 18 17 5 34 34 H 1.09005 * 109.47015 * 291.83788 * 20 19 2 35 35 H 1.09005 * 109.47075 * 51.83438 * 20 19 2 36 36 H 1.09000 * 109.47246 * 171.83300 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7210 -1.2500 5 6 3.5708 -0.7372 -1.2362 6 1 3.9376 -1.2882 -2.1022 7 7 4.0746 0.6377 -1.2797 8 6 5.5179 0.8888 -1.2942 9 6 3.1966 1.6882 -1.3068 10 1 2.2474 1.5857 -1.8116 11 6 3.5266 2.8848 -0.6854 12 7 2.8079 3.9640 -0.9119 13 14 4.9905 2.9634 0.4723 14 1 6.1930 3.4039 -0.2796 15 1 4.7073 3.9300 1.5634 16 1 5.2349 1.6188 1.0532 17 6 4.0545 -1.4192 0.0465 18 6 3.4865 -0.6780 1.2589 19 7 2.0193 -0.6918 1.1993 20 6 1.4375 -0.1105 2.4165 21 1 -0.3633 0.5143 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6656 -1.7447 -1.2576 25 1 1.6887 -0.1986 -2.1399 26 1 5.9584 0.4257 -2.1772 27 1 5.6995 1.9633 -1.3184 28 1 5.9696 0.4641 -0.3977 29 1 3.0388 4.8002 -0.4779 30 1 5.1436 -1.3953 0.0828 31 1 3.7126 -2.4541 0.0597 32 1 3.8174 -1.1702 2.1734 33 1 3.8405 0.3529 1.2531 34 1 1.8281 0.8969 2.5607 35 1 0.3528 -0.0687 2.3166 36 1 1.6997 -0.7283 3.2754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259552688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:37 Heat of formation + Delta-G solvation = 20.185885 kcal Electronic energy + Delta-G solvation = -15975.418315 eV Core-core repulsion = 13687.980715 eV Total energy + Delta-G solvation = -2287.437600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64301 -37.06269 -34.25572 -33.21650 -32.39690 -28.66775 -27.75538 -26.82256 -24.88112 -23.42214 -21.58832 -19.95531 -18.73297 -17.37343 -16.51328 -16.18635 -16.03153 -15.66296 -15.07052 -14.73115 -14.28878 -14.21790 -13.74527 -13.62919 -13.13412 -12.83851 -12.77981 -12.63589 -12.42769 -12.23948 -12.03580 -11.86944 -11.72619 -11.41503 -11.14287 -10.81216 -10.59656 -9.15891 -8.59137 -8.10013 -5.45267 1.26090 1.37348 1.45030 2.42163 3.15067 3.17921 3.37106 4.06201 4.09030 4.27886 4.37037 4.50175 4.57832 4.63198 4.69152 4.76563 4.80970 4.85895 4.90796 4.92975 4.98981 5.01665 5.06758 5.17419 5.31193 5.33647 5.37391 5.45420 5.75617 5.96294 6.21404 6.36315 6.39244 7.00379 7.68475 8.07719 9.08324 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027569 B = 0.016196 C = 0.014667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.374425 B = 1728.448728 C = 1908.558101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.055 3.945 3 H 0.063 0.937 4 C -0.088 4.088 5 C 0.166 3.834 6 H 0.051 0.949 7 N -0.622 5.622 8 C 0.102 3.898 9 C -0.211 4.211 10 H 0.063 0.937 11 C -0.038 4.038 12 N -0.963 5.963 13 Si 0.936 3.064 14 H -0.287 1.287 15 H -0.327 1.327 16 H -0.241 1.241 17 C -0.121 4.121 18 C 0.055 3.945 19 N -0.531 5.531 20 C 0.022 3.978 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.256 0.744 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.015 0.985 34 H -0.003 1.003 35 H 0.080 0.920 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -11.494 3.848 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 H 0.080 0.920 4 C -0.126 4.126 5 C 0.061 3.939 6 H 0.069 0.931 7 N -0.348 5.348 8 C -0.042 4.042 9 C -0.341 4.341 10 H 0.081 0.919 11 C -0.231 4.231 12 N -0.610 5.610 13 Si 0.768 3.232 14 H -0.215 1.215 15 H -0.258 1.258 16 H -0.165 1.165 17 C -0.160 4.160 18 C -0.073 4.073 19 N -0.256 5.256 20 C -0.127 4.127 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.034 0.966 34 H 0.015 0.985 35 H 0.099 0.901 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.370 -11.870 3.833 12.479 hybrid contribution 0.935 1.828 0.569 2.130 sum 1.306 -10.042 4.402 11.042 Atomic orbital electron populations 1.21814 0.94621 1.01850 1.00968 1.22122 0.94891 0.98554 0.89733 0.91970 1.21459 0.94649 0.99905 0.96543 1.20702 0.93743 0.83867 0.95630 0.93109 1.44368 1.01197 1.02363 1.86914 1.21403 0.84814 0.98724 0.99295 1.18645 0.99931 0.90284 1.25201 0.91940 1.25912 1.00370 0.96298 1.00554 1.69889 1.43291 1.00425 1.47389 0.86176 0.80309 0.77596 0.79143 1.21537 1.25760 1.16513 1.21957 0.99697 0.99548 0.94846 1.22072 0.87887 0.98692 0.98656 1.62120 1.06904 1.54261 1.02346 1.22452 1.00869 0.96369 0.92971 0.92957 0.93378 0.91237 0.90274 0.93347 0.93826 0.94467 0.94858 0.93529 0.91889 0.89831 0.90958 0.96646 0.98467 0.90120 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 8.79 71.98 0.63 -3.93 16 2 C 0.05 2.14 1.93 44.94 0.09 2.23 16 3 H 0.06 3.12 4.65 -2.39 -0.01 3.11 16 4 C -0.09 -3.23 4.36 30.65 0.13 -3.09 16 5 C 0.17 6.17 3.33 45.07 0.15 6.32 16 6 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 7 N -0.62 -27.99 2.10 -702.32 -1.47 -29.46 16 8 C 0.10 4.21 8.08 127.77 1.03 5.25 16 9 C -0.21 -11.26 6.39 84.03 0.54 -10.73 16 10 H 0.06 3.66 6.04 -2.91 -0.02 3.64 16 11 C -0.04 -2.16 5.22 84.86 0.44 -1.71 16 12 N -0.96 -60.04 13.97 21.65 0.30 -59.74 16 13 Si 0.94 46.60 23.53 68.60 1.61 48.22 16 14 H -0.29 -13.92 6.75 99.48 0.67 -13.25 16 15 H -0.33 -17.13 7.11 99.48 0.71 -16.42 16 16 H -0.24 -11.09 4.68 99.48 0.47 -10.62 16 17 C -0.12 -3.95 5.46 30.65 0.17 -3.78 16 18 C 0.05 1.99 5.32 86.33 0.46 2.44 16 19 N -0.53 -18.82 4.75 -897.18 -4.26 -23.08 16 20 C 0.02 0.70 9.30 127.69 1.19 1.89 16 21 H 0.05 1.70 6.15 -2.39 -0.01 1.68 16 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.05 1.94 6.99 -2.39 -0.02 1.92 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.70 4.03 -2.39 -0.01 1.69 16 28 H 0.03 1.28 6.08 -2.39 -0.01 1.26 16 29 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.06 1.95 7.04 -2.39 -0.02 1.94 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 33 H 0.02 0.67 5.14 -2.39 -0.01 0.66 16 34 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 35 H 0.08 2.36 5.75 -2.38 -0.01 2.35 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -62.26 254.49 1.79 -60.48 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.77 Total: 8.69 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 4.83 Total: -5.11 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -5.43 Total: -112.27 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.61 Total: 48.22 kcal Total: -62.26 1.79 -60.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.663 kcal (2) G-P(sol) polarization free energy of solvation -62.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds