Wall clock time and date at job start Mon Mar 30 2020 03:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46892 * 2 1 4 4 C 1.50695 * 109.47098 * 239.99361 * 2 1 3 5 5 H 1.07997 * 120.00015 * 239.99816 * 4 2 1 6 6 C 1.37881 * 119.99971 * 60.00675 * 4 2 1 7 7 N 1.31521 * 119.99988 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99961 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47278 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47241 * 119.99814 * 8 6 4 11 11 H 1.48504 * 109.47115 * 239.99440 * 8 6 4 12 12 N 1.46900 * 109.47042 * 119.99403 * 2 1 3 13 13 C 1.46902 * 110.99770 * 63.57898 * 12 2 1 14 14 C 1.46898 * 111.00071 * 187.53013 * 12 2 1 15 15 H 1.08995 * 110.64826 * 301.41714 * 14 12 2 16 16 C 1.54595 * 110.72578 * 178.25908 * 14 12 2 17 17 C 1.53995 * 105.14310 * 219.69142 * 16 14 12 18 18 N 1.47899 * 107.05500 * 358.77147 * 17 16 14 19 19 C 1.46898 * 110.99708 * 145.84737 * 18 17 16 20 20 C 1.48732 * 105.94650 * 25.20499 * 18 17 16 21 21 H 1.09003 * 109.47173 * 52.47313 * 1 2 3 22 22 H 1.08995 * 109.47498 * 172.47070 * 1 2 3 23 23 H 1.09002 * 109.47388 * 292.47471 * 1 2 3 24 24 H 0.97001 * 119.99887 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.46935 * 60.00269 * 13 12 2 26 26 H 1.09001 * 109.46782 * 180.02562 * 13 12 2 27 27 H 1.08996 * 109.47265 * 299.99936 * 13 12 2 28 28 H 1.09002 * 110.30825 * 338.60858 * 16 14 12 29 29 H 1.08999 * 110.30687 * 100.66823 * 16 14 12 30 30 H 1.08996 * 109.91924 * 118.13134 * 17 16 14 31 31 H 1.09007 * 109.91002 * 239.22751 * 17 16 14 32 32 H 1.09006 * 109.47362 * 60.12726 * 19 18 17 33 33 H 1.09004 * 109.46998 * 180.12350 * 19 18 17 34 34 H 1.08994 * 109.47163 * 300.12629 * 19 18 17 35 35 H 1.08993 * 110.84196 * 202.57208 * 20 18 17 36 36 H 1.09001 * 110.58035 * 79.37862 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 3.1484 -2.2859 -3.6035 10 1 1.1679 -1.5869 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 7 2.0197 -0.6924 1.1995 13 6 1.6198 -2.1059 1.1915 14 6 3.4770 -0.5583 1.3267 15 1 3.9784 -0.9645 0.4484 16 6 3.9799 -1.2519 2.6136 17 6 5.0667 -0.3170 3.1760 18 7 5.1874 0.8209 2.2390 19 6 5.5036 2.0628 2.9570 20 6 3.8739 0.9229 1.5486 21 1 -0.3634 0.6260 -0.8150 22 1 -0.3634 -1.0187 -0.1346 23 1 -0.3634 0.3929 0.9496 24 1 0.7083 1.1607 -3.4845 25 1 2.0352 -2.5960 0.3110 26 1 1.9948 -2.5946 2.0907 27 1 0.5323 -2.1757 1.1671 28 1 3.1648 -1.3581 3.3294 29 1 4.4037 -2.2277 2.3764 30 1 4.7728 0.0432 4.1618 31 1 6.0157 -0.8490 3.2429 32 1 6.4497 1.9460 3.4858 33 1 5.5846 2.8839 2.2446 34 1 4.7115 2.2801 3.6734 35 1 3.9762 1.4407 0.5951 36 1 3.1449 1.4254 2.1843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:29 Heat of formation + Delta-G solvation = 12.310689 kcal Electronic energy + Delta-G solvation = -15126.139826 eV Core-core repulsion = 12838.360731 eV Total energy + Delta-G solvation = -2287.779094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.82864 -36.16723 -32.75488 -30.93436 -28.59936 -28.24066 -25.23279 -24.94244 -24.08827 -20.80169 -19.95413 -18.96940 -16.18029 -15.86015 -15.47407 -14.69726 -14.03091 -13.61334 -13.43318 -13.09186 -12.76411 -12.62986 -12.06326 -11.57560 -11.27496 -11.16530 -11.03442 -11.00657 -10.77956 -10.60683 -10.44092 -10.30264 -10.04220 -9.79987 -9.63603 -9.11354 -8.37867 -8.10954 -7.12412 -5.97461 -4.08710 3.27710 3.36248 3.39861 4.32451 4.42292 5.08465 5.14770 5.23796 5.31287 5.45206 5.61800 5.66998 5.89766 6.00720 6.02526 6.14572 6.25939 6.32538 6.36143 6.53724 6.61116 6.78772 6.87867 6.97226 7.06173 7.16159 7.23934 7.35568 7.61573 7.74293 7.98674 8.18614 8.35326 8.46057 9.00609 9.58514 11.03632 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032571 B = 0.009514 C = 0.008934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.443966 B = 2942.257404 C = 3133.277521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.205 3.795 3 H 0.040 0.960 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.537 5.537 13 C 0.033 3.967 14 C 0.091 3.909 15 H 0.059 0.941 16 C -0.128 4.128 17 C 0.040 3.960 18 N -0.527 5.527 19 C 0.019 3.981 20 C 0.051 3.949 21 H 0.078 0.922 22 H 0.027 0.973 23 H 0.014 0.986 24 H 0.260 0.740 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.084 0.916 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -1.167 9.106 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.098 3.902 3 H 0.058 0.942 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.261 5.261 13 C -0.115 4.115 14 C -0.019 4.019 15 H 0.077 0.923 16 C -0.166 4.166 17 C -0.088 4.088 18 N -0.251 5.251 19 C -0.130 4.130 20 C -0.077 4.077 21 H 0.097 0.903 22 H 0.046 0.954 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.103 0.897 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.150 -0.895 9.014 10.420 hybrid contribution 0.034 -0.672 -1.102 1.291 sum 5.184 -1.567 7.912 9.588 Atomic orbital electron populations 1.21757 0.97803 0.99988 0.98955 1.19296 0.92238 0.94217 0.84405 0.94241 1.21718 1.31647 1.12821 0.91665 0.92529 1.24900 0.94858 0.94838 0.98848 1.69911 1.36587 1.22805 1.23271 0.86626 0.78650 0.79803 0.83447 1.19950 1.21067 1.21008 1.62640 1.09098 1.12357 1.42001 1.22173 1.00554 0.89989 0.98824 1.22254 0.89937 0.93925 0.95782 0.92298 1.22520 0.97516 0.98216 0.98349 1.22786 0.98928 0.92833 0.94245 1.64694 1.31124 1.03581 1.25710 1.22462 0.99993 0.92921 0.97582 1.23214 0.87942 0.97610 0.98921 0.90286 0.95368 0.96737 0.93031 0.94953 0.94072 0.92302 0.90942 0.91925 0.94309 0.91115 0.91947 0.91450 0.95689 0.89743 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.50 37.16 0.32 -2.77 16 2 C 0.20 5.08 2.21 -68.87 -0.15 4.93 16 3 H 0.04 1.07 6.87 -51.93 -0.36 0.71 16 4 C -0.54 -14.49 7.05 -34.44 -0.24 -14.73 16 5 H 0.06 1.54 5.85 -52.49 -0.31 1.24 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -25.09 11.41 55.43 0.63 -24.45 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 N -0.54 -11.49 4.57 -226.07 -1.03 -12.52 16 13 C 0.03 0.66 8.69 60.07 0.52 1.18 16 14 C 0.09 1.79 2.51 -65.85 -0.17 1.63 16 15 H 0.06 1.32 7.02 -51.93 -0.36 0.96 16 16 C -0.13 -2.05 5.38 -25.37 -0.14 -2.19 16 17 C 0.04 0.59 6.70 -2.76 -0.02 0.57 16 18 N -0.53 -8.65 5.55 -238.54 -1.32 -9.97 16 19 C 0.02 0.26 9.40 60.06 0.56 0.83 16 20 C 0.05 0.96 5.12 -1.78 -0.01 0.95 16 21 H 0.08 2.09 6.31 -51.93 -0.33 1.76 16 22 H 0.03 0.66 6.87 -51.93 -0.36 0.31 16 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.03 0.69 6.25 -51.93 -0.32 0.36 16 26 H 0.04 0.70 6.63 -51.93 -0.34 0.36 16 27 H 0.06 1.16 6.56 -51.93 -0.34 0.82 16 28 H 0.07 1.15 7.49 -51.93 -0.39 0.76 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.52 7.73 -51.93 -0.40 0.12 16 31 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.02 0.32 8.01 -51.93 -0.42 -0.09 16 35 H 0.08 1.75 7.82 -51.93 -0.41 1.34 16 36 H 0.05 0.93 7.97 -51.93 -0.41 0.52 16 LS Contribution 273.68 15.07 4.12 4.12 Total: -1.00 -27.79 273.68 -8.04 -35.83 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.00 Total: -1.50 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 0.58 Total: -7.84 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -1.72 Total: -46.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.79 -8.04 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.137 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds