Wall clock time and date at job start Mon Mar 30 2020 03:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46892 * 2 1 4 4 C 1.50695 * 109.47098 * 239.99361 * 2 1 3 5 5 H 1.07997 * 120.00015 * 239.99816 * 4 2 1 6 6 C 1.37881 * 119.99971 * 60.00675 * 4 2 1 7 7 N 1.31521 * 119.99988 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99961 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47278 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47241 * 119.99814 * 8 6 4 11 11 H 1.48504 * 109.47115 * 239.99440 * 8 6 4 12 12 N 1.46900 * 109.47042 * 119.99403 * 2 1 3 13 13 C 1.46902 * 110.99770 * 63.57898 * 12 2 1 14 14 C 1.46898 * 111.00071 * 187.53013 * 12 2 1 15 15 H 1.08995 * 110.64826 * 301.41714 * 14 12 2 16 16 C 1.54595 * 110.72578 * 178.25908 * 14 12 2 17 17 C 1.53995 * 105.14310 * 219.69142 * 16 14 12 18 18 N 1.47899 * 107.05500 * 358.77147 * 17 16 14 19 19 C 1.46898 * 110.99708 * 145.84737 * 18 17 16 20 20 C 1.48732 * 105.94650 * 25.20499 * 18 17 16 21 21 H 1.09003 * 109.47173 * 52.47313 * 1 2 3 22 22 H 1.08995 * 109.47498 * 172.47070 * 1 2 3 23 23 H 1.09002 * 109.47388 * 292.47471 * 1 2 3 24 24 H 0.97001 * 119.99887 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.46935 * 60.00269 * 13 12 2 26 26 H 1.09001 * 109.46782 * 180.02562 * 13 12 2 27 27 H 1.08996 * 109.47265 * 299.99936 * 13 12 2 28 28 H 1.09002 * 110.30825 * 338.60858 * 16 14 12 29 29 H 1.08999 * 110.30687 * 100.66823 * 16 14 12 30 30 H 1.08996 * 109.91924 * 118.13134 * 17 16 14 31 31 H 1.09007 * 109.91002 * 239.22751 * 17 16 14 32 32 H 1.09006 * 109.47362 * 60.12726 * 19 18 17 33 33 H 1.09004 * 109.46998 * 180.12350 * 19 18 17 34 34 H 1.08994 * 109.47163 * 300.12629 * 19 18 17 35 35 H 1.08993 * 110.84196 * 202.57208 * 20 18 17 36 36 H 1.09001 * 110.58035 * 79.37862 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 3.1484 -2.2859 -3.6035 10 1 1.1679 -1.5869 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 7 2.0197 -0.6924 1.1995 13 6 1.6198 -2.1059 1.1915 14 6 3.4770 -0.5583 1.3267 15 1 3.9784 -0.9645 0.4484 16 6 3.9799 -1.2519 2.6136 17 6 5.0667 -0.3170 3.1760 18 7 5.1874 0.8209 2.2390 19 6 5.5036 2.0628 2.9570 20 6 3.8739 0.9229 1.5486 21 1 -0.3634 0.6260 -0.8150 22 1 -0.3634 -1.0187 -0.1346 23 1 -0.3634 0.3929 0.9496 24 1 0.7083 1.1607 -3.4845 25 1 2.0352 -2.5960 0.3110 26 1 1.9948 -2.5946 2.0907 27 1 0.5323 -2.1757 1.1671 28 1 3.1648 -1.3581 3.3294 29 1 4.4037 -2.2277 2.3764 30 1 4.7728 0.0432 4.1618 31 1 6.0157 -0.8490 3.2429 32 1 6.4497 1.9460 3.4858 33 1 5.5846 2.8839 2.2446 34 1 4.7115 2.2801 3.6734 35 1 3.9762 1.4407 0.5951 36 1 3.1449 1.4254 2.1843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259923856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:29 Heat of formation + Delta-G solvation = -7.227707 kcal Electronic energy + Delta-G solvation = -15126.987074 eV Core-core repulsion = 12838.360731 eV Total energy + Delta-G solvation = -2288.626343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29820 -37.81434 -34.68480 -32.47731 -30.28554 -29.75456 -27.25200 -26.36331 -25.64292 -22.35117 -21.44604 -20.70867 -18.20761 -17.43322 -16.85071 -16.58597 -15.45519 -15.28995 -14.88114 -14.58385 -14.51389 -13.99540 -13.66504 -13.38655 -13.03193 -12.83918 -12.61927 -12.47961 -12.38402 -12.17796 -12.15615 -12.04807 -11.76975 -11.53564 -11.34483 -11.10843 -10.49008 -9.36539 -8.96185 -8.05188 -6.25003 1.35166 1.38225 1.47754 2.39870 2.99359 3.16346 3.61237 3.81261 3.84519 4.24194 4.39826 4.52065 4.58660 4.61084 4.71774 4.78077 4.88934 4.94518 4.99104 4.99441 5.02965 5.12668 5.18584 5.18818 5.26603 5.33476 5.54990 5.69543 5.88288 5.99537 6.13676 6.21106 6.38092 6.65980 6.94840 7.45215 8.92417 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032571 B = 0.009514 C = 0.008934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.443966 B = 2942.257404 C = 3133.277521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.210 3.790 3 H 0.010 0.990 4 C -0.545 4.545 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.282 1.282 12 N -0.534 5.534 13 C 0.037 3.963 14 C 0.086 3.914 15 H 0.025 0.975 16 C -0.118 4.118 17 C 0.043 3.957 18 N -0.540 5.540 19 C 0.019 3.981 20 C 0.059 3.941 21 H 0.054 0.946 22 H 0.028 0.972 23 H 0.030 0.970 24 H 0.261 0.739 25 H 0.012 0.988 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -2.064 10.480 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 H 0.028 0.972 4 C -0.585 4.585 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.208 1.208 12 N -0.258 5.258 13 C -0.112 4.112 14 C -0.024 4.024 15 H 0.043 0.957 16 C -0.156 4.156 17 C -0.085 4.085 18 N -0.265 5.265 19 C -0.130 4.130 20 C -0.069 4.069 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.044 -1.799 10.404 12.166 hybrid contribution -0.209 -0.376 -1.485 1.546 sum 5.835 -2.175 8.920 10.878 Atomic orbital electron populations 1.21583 0.97434 0.99484 0.98843 1.19074 0.92448 0.92925 0.85319 0.97188 1.21909 1.31289 1.12517 0.92737 0.93367 1.25599 0.95215 0.95580 1.01523 1.70022 1.37478 1.23857 1.23860 0.85701 0.78189 0.78710 0.80206 1.19781 1.20456 1.20789 1.62602 1.10305 1.13146 1.39736 1.22197 1.00525 0.88907 0.99525 1.22274 0.88505 0.94993 0.96605 0.95650 1.22470 0.98221 0.98771 0.96166 1.22858 0.99356 0.91885 0.94384 1.64666 1.29134 1.05504 1.27188 1.22541 1.01336 0.91561 0.97550 1.22964 0.89431 0.96681 0.97825 0.92684 0.95309 0.95074 0.92960 0.96940 0.90717 0.92374 0.90116 0.90705 0.92460 0.89216 0.89487 0.91733 0.95061 0.92907 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.50 71.98 0.61 -5.05 16 2 C 0.21 10.61 2.21 44.17 0.10 10.71 16 3 H 0.01 0.57 6.87 -2.38 -0.02 0.56 16 4 C -0.55 -29.85 7.05 25.60 0.18 -29.67 16 5 H 0.05 2.68 5.85 -2.91 -0.02 2.66 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -52.58 11.41 21.45 0.24 -52.33 16 8 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 N -0.53 -22.70 4.57 -869.16 -3.97 -26.67 16 13 C 0.04 1.42 8.69 127.69 1.11 2.53 16 14 C 0.09 3.37 2.51 46.12 0.12 3.49 16 15 H 0.03 1.17 7.02 -2.39 -0.02 1.15 16 16 C -0.12 -3.49 5.38 31.47 0.17 -3.32 16 17 C 0.04 1.12 6.70 86.45 0.58 1.70 16 18 N -0.54 -16.88 5.55 -908.61 -5.04 -21.92 16 19 C 0.02 0.46 9.40 127.69 1.20 1.66 16 20 C 0.06 2.25 5.12 86.61 0.44 2.69 16 21 H 0.05 2.96 6.31 -2.39 -0.02 2.94 16 22 H 0.03 1.36 6.87 -2.39 -0.02 1.34 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 25 H 0.01 0.51 6.25 -2.39 -0.01 0.50 16 26 H 0.07 2.35 6.63 -2.39 -0.02 2.34 16 27 H 0.06 2.22 6.56 -2.39 -0.02 2.20 16 28 H 0.08 2.28 7.49 -2.39 -0.02 2.26 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.31 7.73 -2.39 -0.02 1.29 16 31 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.03 0.74 8.01 -2.39 -0.02 0.72 16 35 H 0.05 2.30 7.82 -2.39 -0.02 2.28 16 36 H 0.04 1.71 7.97 -2.39 -0.02 1.69 16 Total: -1.00 -59.63 273.68 -0.75 -60.38 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.03 Total: 7.93 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.96 Total: -13.67 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -8.77 Total: -100.93 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -59.63 -0.75 -60.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.156 kcal (2) G-P(sol) polarization free energy of solvation -59.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds