Wall clock time and date at job start Mon Mar 30 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47072 * 2 1 4 4 C 1.50700 * 109.47120 * 119.99882 * 2 1 3 5 5 H 1.08003 * 119.99688 * 120.00100 * 4 2 1 6 6 C 1.37873 * 119.99979 * 299.99850 * 4 2 1 7 7 N 1.31520 * 119.99915 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00262 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47180 * 89.99884 * 8 6 4 10 10 H 1.48498 * 109.47341 * 210.00122 * 8 6 4 11 11 H 1.48504 * 109.46998 * 330.00154 * 8 6 4 12 12 N 1.46901 * 109.47027 * 239.99928 * 2 1 3 13 13 C 1.46908 * 111.00077 * 296.19283 * 12 2 1 14 14 C 1.46895 * 110.99924 * 172.24360 * 12 2 1 15 15 H 1.09000 * 110.27791 * 58.41978 * 14 12 2 16 16 C 1.54599 * 110.39210 * 180.56728 * 14 12 2 17 17 C 1.54933 * 102.92142 * 140.91608 * 16 14 12 18 18 N 1.48531 * 103.22773 * 322.58292 * 17 16 14 19 19 C 1.46900 * 110.99941 * 159.72728 * 18 17 16 20 20 C 1.47895 * 105.81850 * 39.20912 * 18 17 16 21 21 H 1.08997 * 109.47172 * 66.35245 * 1 2 3 22 22 H 1.09011 * 109.47160 * 186.34967 * 1 2 3 23 23 H 1.09001 * 109.47368 * 306.34468 * 1 2 3 24 24 H 0.97001 * 120.00218 * 180.02562 * 7 6 4 25 25 H 1.08992 * 109.47288 * 296.04696 * 13 12 2 26 26 H 1.09001 * 109.46388 * 56.04724 * 13 12 2 27 27 H 1.08998 * 109.46823 * 176.04197 * 13 12 2 28 28 H 1.09008 * 110.72201 * 259.27364 * 16 14 12 29 29 H 1.08998 * 110.72577 * 22.37249 * 16 14 12 30 30 H 1.09002 * 110.66562 * 204.14895 * 17 16 14 31 31 H 1.09003 * 110.67271 * 81.02053 * 17 16 14 32 32 H 1.08997 * 109.46708 * 302.60097 * 19 18 17 33 33 H 1.09001 * 109.46968 * 182.60839 * 19 18 17 34 34 H 1.08991 * 109.47467 * 62.60414 * 19 18 17 35 35 H 1.09000 * 109.91869 * 94.02300 * 20 18 17 36 36 H 1.09003 * 109.91931 * 215.31555 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9951 3.9067 11 1 0.8470 2.1764 1.4920 12 7 2.0196 -0.6925 -1.1994 13 6 1.6244 -2.1074 -1.1887 14 6 3.4762 -0.5539 -1.3296 15 1 3.9743 -0.9563 -0.4475 16 6 3.9744 -1.2753 -2.6030 17 6 5.0647 -0.3150 -3.1410 18 7 4.5035 1.0303 -2.8560 19 6 5.5604 2.0504 -2.8465 20 6 3.8566 0.9247 -1.5302 21 1 -0.3633 0.4122 -0.9413 22 1 -0.3634 -1.0215 0.1137 23 1 -0.3634 0.6090 0.8277 24 1 1.9035 -0.5278 4.4376 25 1 2.0999 -2.6111 -0.3473 26 1 0.5412 -2.1812 -1.0914 27 1 1.9385 -2.5794 -2.1196 28 1 4.4039 -2.2456 -2.3535 29 1 3.1650 -1.3874 -3.3244 30 1 5.2049 -0.4542 -4.2130 31 1 6.0037 -0.4611 -2.6070 32 1 6.3169 1.7828 -2.1089 33 1 5.1292 3.0181 -2.5900 34 1 6.0194 2.1074 -3.8335 35 1 4.5522 1.2381 -0.7517 36 1 2.9610 1.5454 -1.5035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:32 Heat of formation + Delta-G solvation = 22.391423 kcal Electronic energy + Delta-G solvation = -15195.679810 eV Core-core repulsion = 12908.337850 eV Total energy + Delta-G solvation = -2287.341961 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.97638 -36.32484 -32.69636 -31.24299 -29.24494 -28.41050 -25.27944 -24.86943 -24.18054 -20.89121 -20.27425 -18.79827 -16.74086 -15.81985 -15.56427 -14.93127 -14.20291 -13.90871 -13.48228 -12.97125 -12.83937 -12.51436 -12.12603 -12.00360 -11.72429 -11.52057 -11.28103 -11.05947 -10.83275 -10.70742 -10.46326 -10.25314 -10.09191 -9.85641 -9.54623 -9.26181 -8.59129 -8.14748 -7.14546 -6.12299 -4.12542 3.25942 3.36154 3.38268 4.34033 4.37336 4.87545 5.07534 5.13084 5.22186 5.49198 5.58149 5.63232 5.83739 5.95960 5.98359 6.07919 6.14311 6.23337 6.31578 6.41239 6.44414 6.54156 6.60127 6.66392 6.68946 6.84054 7.05170 7.21609 7.23418 7.32390 7.57875 8.12314 8.18111 8.45367 8.89262 9.51650 11.00672 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.010110 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.166852 B = 2768.975743 C = 3016.584424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 H 0.039 0.961 4 C -0.542 4.542 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.900 5.900 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.299 1.299 11 H -0.265 1.265 12 N -0.522 5.522 13 C 0.031 3.969 14 C 0.083 3.917 15 H 0.056 0.944 16 C -0.118 4.118 17 C 0.036 3.964 18 N -0.520 5.520 19 C 0.016 3.984 20 C 0.047 3.953 21 H 0.038 0.962 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.552 2.086 -10.875 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.062 3.938 3 H 0.057 0.943 4 C -0.581 4.581 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.191 1.191 12 N -0.246 5.246 13 C -0.117 4.117 14 C -0.027 4.027 15 H 0.074 0.926 16 C -0.156 4.156 17 C -0.092 4.092 18 N -0.244 5.244 19 C -0.133 4.133 20 C -0.081 4.081 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.965 2.480 -11.484 12.117 hybrid contribution 0.404 0.187 1.787 1.841 sum 3.369 2.667 -9.697 10.607 Atomic orbital electron populations 1.22121 0.98562 1.00728 0.98600 1.19739 0.91507 0.95105 0.87422 0.94280 1.21597 1.32612 1.14044 0.89810 0.90705 1.24974 0.95523 0.96604 0.95840 1.69920 1.45513 1.40358 0.97964 0.86833 0.80683 0.83732 0.76811 1.20583 1.22635 1.19058 1.62555 1.09670 1.12474 1.39885 1.22211 1.00776 0.89612 0.99115 1.22262 0.90219 0.93964 0.96280 0.92577 1.22606 0.97950 0.97151 0.97916 1.23192 0.96252 0.89350 1.00453 1.64763 1.26174 1.04580 1.28910 1.22491 0.93639 0.96430 1.00695 1.22920 0.99166 0.97769 0.88218 0.94257 0.92927 0.94428 0.92703 0.94653 0.92147 0.93621 0.91841 0.90027 0.90590 0.94231 0.95698 0.91561 0.91800 0.94040 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.28 37.16 0.31 -2.84 16 2 C 0.17 3.99 1.70 -68.86 -0.12 3.87 16 3 H 0.04 0.96 5.43 -51.93 -0.28 0.68 16 4 C -0.54 -14.77 7.68 -34.44 -0.26 -15.04 16 5 H 0.08 2.23 6.10 -52.48 -0.32 1.91 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 8 Si 0.89 21.95 24.31 -169.99 -4.13 17.82 16 9 H -0.28 -6.75 6.93 56.52 0.39 -6.36 16 10 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 12 N -0.52 -10.82 4.50 -226.67 -1.02 -11.84 16 13 C 0.03 0.61 8.60 60.07 0.52 1.12 16 14 C 0.08 1.59 2.51 -66.36 -0.17 1.42 16 15 H 0.06 1.23 7.00 -51.93 -0.36 0.87 16 16 C -0.12 -1.85 5.49 -24.87 -0.14 -1.98 16 17 C 0.04 0.51 6.56 -1.90 -0.01 0.49 16 18 N -0.52 -8.23 5.55 -238.73 -1.33 -9.56 16 19 C 0.02 0.21 9.40 60.06 0.56 0.78 16 20 C 0.05 0.86 5.81 -2.76 -0.02 0.84 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 1.14 6.73 -51.92 -0.35 0.79 16 23 H 0.04 0.85 3.47 -51.93 -0.18 0.67 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.03 0.76 6.39 -51.93 -0.33 0.43 16 26 H 0.06 1.15 6.35 -51.93 -0.33 0.82 16 27 H 0.05 0.76 6.69 -51.93 -0.35 0.41 16 28 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.08 1.29 7.45 -51.93 -0.39 0.91 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.54 7.96 -51.93 -0.41 0.13 16 32 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.77 7.73 -51.93 -0.40 0.36 16 36 H 0.09 1.74 6.64 -51.93 -0.34 1.39 16 LS Contribution 265.31 15.07 4.00 4.00 Total: -1.00 -29.28 265.31 -6.89 -36.16 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.76 Total: -0.77 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 0.58 Total: -9.35 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -1.57 Total: -47.86 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.13 Total: 17.82 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.28 -6.89 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.555 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds