Wall clock time and date at job start Mon Mar 30 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47072 * 2 1 4 4 C 1.50700 * 109.47120 * 119.99882 * 2 1 3 5 5 H 1.08003 * 119.99688 * 120.00100 * 4 2 1 6 6 C 1.37873 * 119.99979 * 299.99850 * 4 2 1 7 7 N 1.31520 * 119.99915 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00262 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47180 * 89.99884 * 8 6 4 10 10 H 1.48498 * 109.47341 * 210.00122 * 8 6 4 11 11 H 1.48504 * 109.46998 * 330.00154 * 8 6 4 12 12 N 1.46901 * 109.47027 * 239.99928 * 2 1 3 13 13 C 1.46908 * 111.00077 * 296.19283 * 12 2 1 14 14 C 1.46895 * 110.99924 * 172.24360 * 12 2 1 15 15 H 1.09000 * 110.27791 * 58.41978 * 14 12 2 16 16 C 1.54599 * 110.39210 * 180.56728 * 14 12 2 17 17 C 1.54933 * 102.92142 * 140.91608 * 16 14 12 18 18 N 1.48531 * 103.22773 * 322.58292 * 17 16 14 19 19 C 1.46900 * 110.99941 * 159.72728 * 18 17 16 20 20 C 1.47895 * 105.81850 * 39.20912 * 18 17 16 21 21 H 1.08997 * 109.47172 * 66.35245 * 1 2 3 22 22 H 1.09011 * 109.47160 * 186.34967 * 1 2 3 23 23 H 1.09001 * 109.47368 * 306.34468 * 1 2 3 24 24 H 0.97001 * 120.00218 * 180.02562 * 7 6 4 25 25 H 1.08992 * 109.47288 * 296.04696 * 13 12 2 26 26 H 1.09001 * 109.46388 * 56.04724 * 13 12 2 27 27 H 1.08998 * 109.46823 * 176.04197 * 13 12 2 28 28 H 1.09008 * 110.72201 * 259.27364 * 16 14 12 29 29 H 1.08998 * 110.72577 * 22.37249 * 16 14 12 30 30 H 1.09002 * 110.66562 * 204.14895 * 17 16 14 31 31 H 1.09003 * 110.67271 * 81.02053 * 17 16 14 32 32 H 1.08997 * 109.46708 * 302.60097 * 19 18 17 33 33 H 1.09001 * 109.46968 * 182.60839 * 19 18 17 34 34 H 1.08991 * 109.47467 * 62.60414 * 19 18 17 35 35 H 1.09000 * 109.91869 * 94.02300 * 20 18 17 36 36 H 1.09003 * 109.91931 * 215.31555 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9951 3.9067 11 1 0.8470 2.1764 1.4920 12 7 2.0196 -0.6925 -1.1994 13 6 1.6244 -2.1074 -1.1887 14 6 3.4762 -0.5539 -1.3296 15 1 3.9743 -0.9563 -0.4475 16 6 3.9744 -1.2753 -2.6030 17 6 5.0647 -0.3150 -3.1410 18 7 4.5035 1.0303 -2.8560 19 6 5.5604 2.0504 -2.8465 20 6 3.8566 0.9247 -1.5302 21 1 -0.3633 0.4122 -0.9413 22 1 -0.3634 -1.0215 0.1137 23 1 -0.3634 0.6090 0.8277 24 1 1.9035 -0.5278 4.4376 25 1 2.0999 -2.6111 -0.3473 26 1 0.5412 -2.1812 -1.0914 27 1 1.9385 -2.5794 -2.1196 28 1 4.4039 -2.2456 -2.3535 29 1 3.1650 -1.3874 -3.3244 30 1 5.2049 -0.4542 -4.2130 31 1 6.0037 -0.4611 -2.6070 32 1 6.3169 1.7828 -2.1089 33 1 5.1292 3.0181 -2.5900 34 1 6.0194 2.1074 -3.8335 35 1 4.5522 1.2381 -0.7517 36 1 2.9610 1.5454 -1.5035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259923860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:32 Heat of formation + Delta-G solvation = -0.263849 kcal Electronic energy + Delta-G solvation = -15196.662217 eV Core-core repulsion = 12908.337850 eV Total energy + Delta-G solvation = -2288.324367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42454 -37.90968 -34.66026 -32.88148 -30.81319 -29.84278 -27.16473 -26.29830 -25.75710 -22.36339 -21.70777 -20.58084 -18.70378 -17.40899 -16.98477 -16.67492 -15.83612 -15.27808 -15.07035 -14.61851 -14.45442 -13.97395 -13.85449 -13.73251 -13.15889 -12.96753 -12.94327 -12.53980 -12.43385 -12.12065 -12.02056 -11.80633 -11.70210 -11.62951 -11.40786 -11.22618 -10.75099 -9.39109 -8.93002 -8.32559 -6.36283 1.29344 1.34361 1.44563 2.29844 3.02956 3.12491 3.27513 3.74299 3.87082 4.31034 4.37436 4.43470 4.51627 4.55142 4.60683 4.68043 4.77169 4.78852 4.86432 4.92107 4.97843 5.01515 5.02967 5.07633 5.16824 5.24509 5.26416 5.45956 5.55250 5.91797 6.12255 6.16336 6.38464 6.51753 6.71394 7.31763 8.83963 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.010110 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.166852 B = 2768.975743 C = 3016.584424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.172 3.828 3 H 0.033 0.967 4 C -0.534 4.534 5 H 0.035 0.965 6 C 0.015 3.985 7 N -0.949 5.949 8 Si 0.948 3.052 9 H -0.266 1.266 10 H -0.301 1.301 11 H -0.248 1.248 12 N -0.516 5.516 13 C 0.036 3.964 14 C 0.077 3.923 15 H 0.017 0.983 16 C -0.110 4.110 17 C 0.040 3.960 18 N -0.527 5.527 19 C 0.015 3.985 20 C 0.053 3.947 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.033 0.967 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.045 0.955 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.029 0.971 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 3.101 -13.203 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.064 3.936 3 H 0.051 0.949 4 C -0.572 4.572 5 H 0.053 0.947 6 C -0.183 4.183 7 N -0.589 5.589 8 Si 0.775 3.225 9 H -0.192 1.192 10 H -0.229 1.229 11 H -0.172 1.172 12 N -0.239 5.239 13 C -0.113 4.113 14 C -0.033 4.033 15 H 0.035 0.965 16 C -0.148 4.148 17 C -0.088 4.088 18 N -0.251 5.251 19 C -0.133 4.133 20 C -0.075 4.075 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.553 3.494 -13.847 14.507 hybrid contribution 0.629 -0.206 2.463 2.551 sum 3.182 3.287 -11.384 12.269 Atomic orbital electron populations 1.22041 0.96892 1.00862 0.99866 1.19645 0.92777 0.94472 0.86741 0.94898 1.21820 1.31186 1.12641 0.91598 0.94687 1.25809 0.97167 0.99805 0.95485 1.70066 1.47711 1.42544 0.98585 0.85871 0.79316 0.80197 0.77121 1.19197 1.22902 1.17182 1.62612 1.10618 1.12931 1.37781 1.22229 1.00787 0.88771 0.99478 1.22317 0.89009 0.95298 0.96692 0.96492 1.22571 0.98626 0.97713 0.95859 1.23265 0.95616 0.87850 1.02080 1.64773 1.27622 1.06007 1.26696 1.22577 0.92935 0.95639 1.02195 1.22741 0.98642 0.96531 0.89608 0.91553 0.93062 0.94851 0.92700 0.97788 0.91706 0.90377 0.90826 0.89468 0.87820 0.93714 0.95696 0.91377 0.89297 0.95249 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 8.28 71.98 0.60 -5.27 16 2 C 0.17 8.01 1.70 44.17 0.08 8.09 16 3 H 0.03 1.59 5.43 -2.39 -0.01 1.58 16 4 C -0.53 -29.90 7.68 25.60 0.20 -29.70 16 5 H 0.03 2.20 6.10 -2.91 -0.02 2.18 16 6 C 0.02 0.87 5.45 84.65 0.46 1.33 16 7 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 8 Si 0.95 45.10 24.31 68.60 1.67 46.77 16 9 H -0.27 -12.06 6.93 99.48 0.69 -11.37 16 10 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 11 H -0.25 -10.99 6.53 99.48 0.65 -10.34 16 12 N -0.52 -21.03 4.50 -871.05 -3.92 -24.96 16 13 C 0.04 1.36 8.60 127.69 1.10 2.46 16 14 C 0.08 2.94 2.51 45.80 0.11 3.05 16 15 H 0.02 0.78 7.00 -2.39 -0.02 0.77 16 16 C -0.11 -3.21 5.49 31.80 0.17 -3.03 16 17 C 0.04 1.01 6.56 86.65 0.57 1.58 16 18 N -0.53 -15.47 5.55 -909.20 -5.05 -20.51 16 19 C 0.01 0.35 9.40 127.69 1.20 1.55 16 20 C 0.05 1.91 5.81 86.45 0.50 2.42 16 21 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 22 H 0.05 2.14 6.73 -2.38 -0.02 2.13 16 23 H 0.03 1.43 3.47 -2.39 -0.01 1.42 16 24 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 25 H 0.00 0.16 6.39 -2.39 -0.02 0.14 16 26 H 0.06 2.39 6.35 -2.39 -0.02 2.38 16 27 H 0.08 2.45 6.69 -2.39 -0.02 2.43 16 28 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.09 2.49 7.45 -2.39 -0.02 2.47 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.11 7.96 -2.39 -0.02 1.09 16 32 H 0.02 0.58 8.00 -2.39 -0.02 0.57 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 1.10 7.73 -2.39 -0.02 1.08 16 36 H 0.07 2.84 6.64 -2.39 -0.02 2.83 16 Total: -1.00 -64.05 265.31 -1.05 -65.10 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.97 Total: 10.17 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 4.99 Total: -17.53 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -8.67 Total: -104.50 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Total: -64.05 -1.05 -65.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.832 kcal (2) G-P(sol) polarization free energy of solvation -64.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds