Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46982 * 2 1 4 4 C 1.50701 * 109.47119 * 120.00069 * 2 1 3 5 5 H 1.07997 * 120.00037 * 120.00645 * 4 2 1 6 6 C 1.37875 * 119.99758 * 300.00271 * 4 2 1 7 7 N 1.31513 * 120.00444 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99616 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46979 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47202 * 119.99854 * 8 6 4 11 11 H 1.48498 * 109.46675 * 239.99828 * 8 6 4 12 12 N 1.46900 * 109.47216 * 240.00446 * 2 1 3 13 13 C 1.46898 * 110.99743 * 306.04082 * 12 2 1 14 14 C 1.46903 * 111.00334 * 69.99780 * 12 2 1 15 15 H 1.08995 * 110.28293 * 302.12584 * 14 12 2 16 16 C 1.54257 * 110.32186 * 179.97438 * 14 12 2 17 17 C 1.54381 * 105.14978 * 240.94885 * 16 14 12 18 18 N 1.48720 * 104.51692 * 336.27274 * 17 16 14 19 19 C 1.46900 * 111.01831 * 158.96284 * 18 17 16 20 20 C 1.48567 * 104.28820 * 39.36098 * 18 17 16 21 21 H 1.09001 * 109.46313 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47220 * 299.99857 * 1 2 3 23 23 H 1.08998 * 109.47196 * 60.00196 * 1 2 3 24 24 H 0.96997 * 120.00232 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47147 * 183.95739 * 13 12 2 26 26 H 1.09002 * 109.47560 * 303.95527 * 13 12 2 27 27 H 1.09003 * 109.47297 * 63.95864 * 13 12 2 28 28 H 1.09002 * 110.32715 * 359.89941 * 16 14 12 29 29 H 1.08998 * 110.32251 * 122.00467 * 16 14 12 30 30 H 1.09004 * 110.40867 * 94.98012 * 17 16 14 31 31 H 1.08996 * 110.41187 * 217.42234 * 17 16 14 32 32 H 1.09001 * 109.47412 * 304.49367 * 19 18 17 33 33 H 1.09003 * 109.46556 * 64.49268 * 19 18 17 34 34 H 1.08995 * 109.47730 * 184.49237 * 19 18 17 35 35 H 1.08999 * 110.41133 * 201.79165 * 20 18 17 36 36 H 1.09004 * 110.50861 * 79.40616 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1474 -2.2863 3.6037 10 1 3.1472 -0.1859 4.8161 11 1 1.1678 -1.5867 4.8164 12 7 2.0197 -0.6924 -1.1995 13 6 1.4344 -2.0354 -1.3078 14 6 1.7530 0.0974 -2.4091 15 1 0.6852 0.2951 -2.5034 16 6 2.2736 -0.6433 -3.6581 17 6 3.3331 0.2968 -4.2722 18 7 2.9624 1.6496 -3.7780 19 6 4.1078 2.5670 -3.8443 20 6 2.5422 1.4236 -2.3710 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7094 1.1617 3.4844 25 1 1.8666 -2.5520 -2.1648 26 1 1.6467 -2.5987 -0.3992 27 1 0.3556 -1.9521 -1.4400 28 1 2.7287 -1.5920 -3.3735 29 1 1.4610 -0.8109 -4.3649 30 1 4.3297 0.0253 -3.9241 31 1 3.2870 0.2620 -5.3606 32 1 4.9465 2.1415 -3.2932 33 1 4.3948 2.7151 -4.8854 34 1 3.8321 3.5250 -3.4037 35 1 1.9021 2.2373 -2.0300 36 1 3.4134 1.3291 -1.7227 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259923862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = -3.244662 kcal Electronic energy + Delta-G solvation = -15068.380698 eV Core-core repulsion = 12779.927074 eV Total energy + Delta-G solvation = -2288.453625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42537 -37.82978 -34.77997 -32.41076 -30.14873 -29.82752 -27.32873 -26.38330 -25.74766 -22.60280 -21.76197 -20.12348 -18.24405 -17.55302 -16.76699 -16.53917 -15.65410 -15.30044 -15.00006 -14.66856 -14.47517 -14.03413 -13.66244 -13.28275 -13.07065 -12.85441 -12.67227 -12.43072 -12.34796 -12.28521 -12.19746 -12.04144 -11.84101 -11.65210 -11.40939 -10.88174 -10.48588 -9.49530 -8.84369 -8.10259 -6.20945 1.40730 1.42705 1.54358 2.42652 3.00309 3.18734 3.55995 3.74491 3.82286 4.21112 4.37376 4.47888 4.55613 4.59721 4.68690 4.73398 4.76010 4.85051 4.87274 4.94044 4.98093 5.04269 5.07363 5.17405 5.18169 5.30732 5.52097 5.68389 5.79184 5.86479 6.05789 6.23806 6.50412 6.77820 6.93267 7.48307 8.95986 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040776 B = 0.008410 C = 0.007936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.507924 B = 3328.376476 C = 3527.252951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.009 0.991 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.538 5.538 13 C 0.036 3.964 14 C 0.075 3.925 15 H 0.031 0.969 16 C -0.114 4.114 17 C 0.039 3.961 18 N -0.526 5.526 19 C 0.014 3.986 20 C 0.051 3.949 21 H 0.033 0.967 22 H 0.060 0.940 23 H 0.020 0.980 24 H 0.260 0.740 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.016 0.984 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.025 0.975 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 -1.508 -11.748 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.027 0.973 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.262 5.262 13 C -0.112 4.112 14 C -0.035 4.035 15 H 0.049 0.951 16 C -0.152 4.152 17 C -0.089 4.089 18 N -0.250 5.250 19 C -0.134 4.134 20 C -0.078 4.078 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.044 0.956 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.529 -1.196 -11.901 12.471 hybrid contribution -0.172 -0.266 1.695 1.725 sum 3.357 -1.461 -10.206 10.843 Atomic orbital electron populations 1.22192 1.00643 0.99172 0.99690 1.19040 0.89763 0.93137 0.87238 0.97324 1.21416 1.30363 1.12365 0.90938 0.92605 1.25696 0.95478 0.95848 1.01837 1.70023 1.38032 1.24226 1.23874 0.85497 0.78057 0.78634 0.79376 1.19218 1.20831 1.20665 1.62405 1.58791 1.03139 1.01901 1.22253 0.96357 0.90826 1.01740 1.22319 0.96741 0.93268 0.91152 0.95092 1.22442 0.98996 0.98771 0.94987 1.23160 0.97030 0.87675 1.01012 1.65410 1.33540 1.10058 1.15972 1.22545 0.91184 0.96765 1.02944 1.22921 0.98442 0.96645 0.89753 0.94790 0.92109 0.96104 0.93042 0.90320 0.92662 0.96577 0.89931 0.90029 0.93831 0.88073 0.95633 0.89184 0.91503 0.92232 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 8.23 71.98 0.59 -7.24 16 2 C 0.22 11.02 2.19 44.17 0.10 11.11 16 3 H 0.01 0.50 6.96 -2.39 -0.02 0.49 16 4 C -0.51 -28.40 7.91 25.60 0.20 -28.20 16 5 H 0.06 3.10 7.12 -2.91 -0.02 3.08 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 8 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.54 -23.02 4.50 -870.96 -3.92 -26.94 16 13 C 0.04 1.38 8.35 127.69 1.07 2.44 16 14 C 0.07 2.75 2.59 45.81 0.12 2.87 16 15 H 0.03 1.22 6.59 -2.39 -0.02 1.20 16 16 C -0.11 -3.22 6.13 31.49 0.19 -3.03 16 17 C 0.04 1.00 6.51 86.42 0.56 1.57 16 18 N -0.53 -15.66 5.66 -907.16 -5.13 -20.80 16 19 C 0.01 0.35 9.53 127.69 1.22 1.57 16 20 C 0.05 1.87 4.86 86.45 0.42 2.29 16 21 H 0.03 1.61 6.41 -2.39 -0.02 1.60 16 22 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 23 H 0.02 0.93 6.67 -2.39 -0.02 0.91 16 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.08 2.44 6.12 -2.39 -0.01 2.43 16 26 H 0.05 2.28 6.76 -2.39 -0.02 2.26 16 27 H 0.02 0.60 6.46 -2.39 -0.02 0.59 16 28 H 0.08 2.28 6.15 -2.39 -0.01 2.27 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.13 7.91 -2.38 -0.02 1.11 16 31 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.03 0.64 7.98 -2.39 -0.02 0.62 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.04 1.48 7.85 -2.39 -0.02 1.47 16 Total: -1.00 -60.25 272.02 -0.83 -61.08 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.04 Total: 9.42 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.92 Total: -15.63 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -8.81 Total: -100.96 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.25 -0.83 -61.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.839 kcal (2) G-P(sol) polarization free energy of solvation -60.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds