Wall clock time and date at job start Mon Mar 30 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46654 * 2 1 4 4 C 1.50698 * 109.47364 * 239.99696 * 2 1 3 5 5 H 1.07995 * 120.00179 * 239.99903 * 4 2 1 6 6 C 1.37879 * 119.99768 * 60.00122 * 4 2 1 7 7 N 1.31512 * 120.00055 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99741 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47461 * 59.99878 * 8 6 4 10 10 H 1.48499 * 109.46957 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47264 * 299.99719 * 8 6 4 12 12 N 1.46901 * 109.46937 * 119.99394 * 2 1 3 13 13 C 1.46899 * 110.99869 * 176.04503 * 12 2 1 14 14 C 1.46897 * 111.00162 * 300.00456 * 12 2 1 15 15 H 1.08995 * 110.27724 * 54.43159 * 14 12 2 16 16 C 1.54595 * 110.30857 * 176.62448 * 14 12 2 17 17 C 1.54935 * 102.92236 * 140.86915 * 16 14 12 18 18 N 1.48532 * 103.22917 * 322.59299 * 17 16 14 19 19 C 1.46901 * 111.00194 * 159.71986 * 18 17 16 20 20 C 1.47894 * 105.82298 * 39.19943 * 18 17 16 21 21 H 1.08995 * 109.47103 * 300.00298 * 1 2 3 22 22 H 1.09000 * 109.46625 * 60.00444 * 1 2 3 23 23 H 1.08998 * 109.46654 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99872 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47133 * 189.41882 * 13 12 2 26 26 H 1.08993 * 109.47196 * 309.41938 * 13 12 2 27 27 H 1.09002 * 109.46955 * 69.42205 * 13 12 2 28 28 H 1.09005 * 110.72738 * 259.23294 * 16 14 12 29 29 H 1.09002 * 110.72542 * 22.33659 * 16 14 12 30 30 H 1.08998 * 110.67108 * 204.14873 * 17 16 14 31 31 H 1.09010 * 110.66569 * 81.02129 * 17 16 14 32 32 H 1.09002 * 109.46788 * 302.59630 * 19 18 17 33 33 H 1.09003 * 109.46724 * 182.60147 * 19 18 17 34 34 H 1.08996 * 109.47040 * 62.60116 * 19 18 17 35 35 H 1.09000 * 109.91899 * 94.02264 * 20 18 17 36 36 H 1.08998 * 109.92112 * 215.12606 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8262 -0.4208 -5.2203 11 1 3.8066 -1.1210 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0262 2.4211 15 1 0.4629 0.0687 2.4049 16 6 2.0017 -0.8149 3.6712 17 6 2.3794 0.3072 4.6706 18 7 3.0053 1.3381 3.8037 19 6 2.9968 2.6528 4.4590 20 6 2.2043 1.3601 2.5607 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 0.7091 1.1613 -3.4844 25 1 3.8103 -1.4517 1.9936 26 1 3.8128 -1.2027 0.2312 27 1 3.9194 0.1954 1.3276 28 1 1.1844 -1.4209 4.0622 29 1 2.8663 -1.4378 3.4418 30 1 3.0925 -0.0593 5.4090 31 1 1.4887 0.7038 5.1582 32 1 1.9719 2.9278 4.7084 33 1 3.4188 3.3977 3.7843 34 1 3.5932 2.6085 5.3702 35 1 1.4351 2.1295 2.6282 36 1 2.8511 1.5560 1.7055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259923864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:37 Heat of formation + Delta-G solvation = 1.039748 kcal Electronic energy + Delta-G solvation = -15132.294334 eV Core-core repulsion = 12844.026495 eV Total energy + Delta-G solvation = -2288.267839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65763 -37.54614 -34.76905 -32.32720 -30.79961 -29.47722 -27.45575 -26.33605 -25.36113 -22.73224 -21.90671 -20.02062 -18.41903 -17.44214 -16.78833 -16.60493 -15.59034 -15.31969 -15.19785 -14.85188 -14.33331 -13.74902 -13.49277 -13.16892 -12.98062 -12.90340 -12.69545 -12.57839 -12.43314 -12.23445 -12.16145 -12.00501 -11.88962 -11.74301 -11.23943 -10.85783 -10.49259 -9.42602 -8.83052 -8.10177 -6.21486 1.42870 1.44640 1.52083 2.43157 3.08265 3.18234 3.36191 3.84599 3.89162 4.15329 4.33217 4.42501 4.50841 4.57140 4.66582 4.71235 4.79423 4.81462 4.94079 4.95471 4.98793 5.03731 5.13875 5.23034 5.29086 5.40067 5.53989 5.74264 5.82465 5.87070 6.10029 6.27735 6.44607 6.79470 6.94180 7.47437 8.95660 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050214 B = 0.008030 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.477621 B = 3485.951050 C = 3558.425095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.217 3.783 3 H -0.034 1.034 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.532 5.532 13 C 0.040 3.960 14 C 0.067 3.933 15 H 0.077 0.923 16 C -0.112 4.112 17 C 0.040 3.960 18 N -0.533 5.533 19 C 0.017 3.983 20 C 0.015 3.985 21 H 0.027 0.973 22 H 0.059 0.941 23 H 0.030 0.970 24 H 0.261 0.739 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.014 0.986 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 -0.032 12.847 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.111 3.889 3 H -0.016 1.016 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.255 5.255 13 C -0.108 4.108 14 C -0.043 4.043 15 H 0.096 0.904 16 C -0.150 4.150 17 C -0.088 4.088 18 N -0.257 5.257 19 C -0.131 4.131 20 C -0.115 4.115 21 H 0.046 0.954 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.052 0.948 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.486 -0.510 12.587 12.841 hybrid contribution -0.396 1.064 -1.061 1.554 sum 2.090 0.554 11.526 11.727 Atomic orbital electron populations 1.21654 0.97609 0.99126 0.99493 1.18999 0.92338 0.90443 0.87169 1.01620 1.21452 1.31069 1.12331 0.91087 0.92237 1.25710 0.95404 0.95776 1.01893 1.70014 1.37836 1.24209 1.24037 0.85595 0.78690 0.78727 0.78523 1.19644 1.20989 1.19747 1.62271 1.10368 1.51224 1.01672 1.22209 0.87977 0.99231 1.01350 1.22711 0.98966 0.91021 0.91612 0.90449 1.22614 1.02102 0.97388 0.92910 1.23301 0.98222 0.91811 0.95449 1.64695 1.49521 1.07214 1.04295 1.22544 1.00494 0.90210 0.99889 1.23372 0.95546 0.98804 0.93764 0.95437 0.92242 0.95037 0.92994 0.90957 0.92681 0.96715 0.89553 0.90360 0.88251 0.92855 0.95101 0.92170 0.89407 0.94773 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.76 71.98 0.63 -5.40 16 2 C 0.22 11.25 1.82 44.17 0.08 11.33 16 3 H -0.03 -1.94 6.80 -2.39 -0.02 -1.96 16 4 C -0.52 -29.15 7.81 25.60 0.20 -28.95 16 5 H 0.06 3.30 6.45 -2.91 -0.02 3.28 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.53 -23.15 4.65 -871.06 -4.05 -27.20 16 13 C 0.04 1.64 8.74 127.69 1.12 2.76 16 14 C 0.07 2.42 2.81 45.79 0.13 2.55 16 15 H 0.08 2.88 6.08 -2.39 -0.01 2.86 16 16 C -0.11 -3.14 6.53 31.80 0.21 -2.93 16 17 C 0.04 0.95 6.56 86.65 0.57 1.52 16 18 N -0.53 -15.56 5.55 -909.17 -5.05 -20.60 16 19 C 0.02 0.40 9.40 127.69 1.20 1.60 16 20 C 0.01 0.53 5.17 86.45 0.45 0.98 16 21 H 0.03 1.20 6.29 -2.39 -0.02 1.19 16 22 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 23 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.07 2.53 6.18 -2.39 -0.01 2.51 16 26 H 0.05 2.44 5.95 -2.39 -0.01 2.42 16 27 H 0.01 0.61 6.00 -2.39 -0.01 0.59 16 28 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.08 2.28 5.82 -2.39 -0.01 2.26 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.16 7.96 -2.38 -0.02 1.14 16 32 H 0.03 0.68 8.00 -2.39 -0.02 0.66 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.03 1.20 7.73 -2.39 -0.02 1.19 16 36 H 0.05 2.28 5.21 -2.39 -0.01 2.26 16 Total: -1.00 -60.86 268.84 -0.75 -61.61 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.05 Total: 8.94 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.03 Total: -15.50 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -8.85 Total: -101.32 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -60.86 -0.75 -61.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.653 kcal (2) G-P(sol) polarization free energy of solvation -60.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds