Wall clock time and date at job start Mon Mar 30 2020 02:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.73389 * 2 1 4 4 C 1.50784 * 109.77500 * 120.68052 * 2 1 3 5 5 N 1.47750 * 111.91261 * 214.28187 * 4 2 1 6 6 C 1.46894 * 111.00184 * 84.93713 * 5 4 2 7 7 C 1.50700 * 109.47142 * 166.34784 * 6 5 4 8 8 H 1.07998 * 119.99687 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00176 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99927 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00146 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47122 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47455 * 119.99870 * 11 9 7 14 14 H 1.48503 * 109.47182 * 240.00124 * 11 9 7 15 15 C 1.48068 * 113.78647 * 318.86989 * 5 4 2 16 16 C 1.50744 * 112.93486 * 318.28914 * 15 5 4 17 17 C 1.54507 * 108.94010 * 92.65809 * 16 15 5 18 18 N 1.40083 * 111.51584 * 283.98078 * 17 16 15 19 19 C 1.46897 * 111.00246 * 188.14158 * 18 17 16 20 20 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46619 * 299.99702 * 1 2 3 22 22 H 1.09003 * 109.47068 * 59.99440 * 1 2 3 23 23 H 1.08999 * 108.98773 * 334.90676 * 4 2 1 24 24 H 1.08991 * 108.99084 * 93.65255 * 4 2 1 25 25 H 1.08993 * 109.47242 * 286.35380 * 6 5 4 26 26 H 1.08998 * 109.47198 * 46.35525 * 6 5 4 27 27 H 0.97001 * 120.00178 * 179.97438 * 10 9 7 28 28 H 1.08998 * 108.79023 * 197.39959 * 15 5 4 29 29 H 1.09000 * 108.79171 * 79.18145 * 15 5 4 30 30 H 1.08992 * 109.56044 * 332.81805 * 16 15 5 31 31 H 1.09005 * 109.64643 * 212.54283 * 16 15 5 32 32 H 1.08999 * 109.07563 * 163.45177 * 17 16 15 33 33 H 1.09004 * 109.07339 * 44.50154 * 17 16 15 34 34 H 1.09002 * 109.47429 * 291.36224 * 19 18 17 35 35 H 1.09003 * 109.47344 * 51.36528 * 19 18 17 36 36 H 1.09001 * 109.47089 * 171.35900 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0402 -0.7240 1.2203 5 7 3.2926 -0.1292 1.7310 6 6 3.0119 1.0028 2.6240 7 6 4.2630 1.3680 3.3805 8 1 5.1755 0.8147 3.2142 9 6 4.2431 2.4092 4.2843 10 7 3.1320 3.0832 4.4864 11 14 5.7940 2.8623 5.2215 12 1 6.8998 1.9581 4.8154 13 1 6.1656 4.2667 4.9142 14 1 5.5498 2.7225 6.6797 15 6 4.2470 0.2580 0.6672 16 6 4.3432 -0.7645 -0.4363 17 6 3.3450 -0.3908 -1.5548 18 7 2.0287 -0.7087 -1.1960 19 6 1.1155 -0.5303 -2.3326 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.2818 -0.6795 2.0019 24 1 2.2220 -1.7675 0.9635 25 1 2.6814 1.8577 2.0341 26 1 2.2293 0.7238 3.3294 27 1 3.1179 3.8155 5.1224 28 1 5.2337 0.3890 1.1114 29 1 3.9284 1.2082 0.2385 30 1 4.0976 -1.7506 -0.0424 31 1 5.3559 -0.7744 -0.8394 32 1 3.6077 -0.9337 -2.4627 33 1 3.4123 0.6797 -1.7493 34 1 1.0288 0.5309 -2.5661 35 1 1.5064 -1.0624 -3.1999 36 1 0.1334 -0.9272 -2.0754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260556183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:47 Heat of formation + Delta-G solvation = 14.326886 kcal Electronic energy + Delta-G solvation = -15099.019505 eV Core-core repulsion = 12811.327840 eV Total energy + Delta-G solvation = -2287.691665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50501 -35.54227 -33.12300 -32.53580 -29.70134 -27.46257 -26.58566 -24.26184 -23.76837 -21.53858 -20.11581 -18.91613 -16.45082 -15.72278 -15.60435 -15.24314 -14.58396 -13.89997 -13.56653 -13.03918 -12.77557 -12.45714 -12.24873 -11.91833 -11.87252 -11.62214 -11.20628 -11.11779 -10.90995 -10.73157 -10.52044 -10.40903 -10.31894 -10.00168 -9.69149 -9.11022 -8.40164 -8.03596 -7.00020 -5.99326 -4.00311 3.32630 3.39871 3.45178 4.13258 4.45366 4.92024 5.13021 5.28557 5.33176 5.37451 5.38270 5.55518 5.59312 5.65367 5.76072 5.87667 5.99093 6.09712 6.11555 6.20402 6.24662 6.35595 6.38979 6.64174 6.81300 6.85653 7.28479 7.38028 7.41620 7.62761 7.87196 8.17395 8.29337 8.64080 9.08414 9.64016 11.11394 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047133 B = 0.008110 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.920323 B = 3451.770119 C = 3817.469072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 H 0.049 0.951 4 C 0.065 3.935 5 N -0.544 5.544 6 C 0.196 3.804 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.053 3.947 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.071 3.929 16 C -0.121 4.121 17 C 0.072 3.928 18 N -0.552 5.552 19 C 0.028 3.972 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.072 0.928 25 H -0.013 1.013 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.015 0.985 34 H 0.020 0.980 35 H 0.059 0.941 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 -6.159 -11.427 13.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.048 4.048 3 H 0.067 0.933 4 C -0.064 4.064 5 N -0.269 5.269 6 C 0.070 3.930 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.210 1.210 15 C -0.057 4.057 16 C -0.159 4.159 17 C -0.057 4.057 18 N -0.277 5.277 19 C -0.120 4.120 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.005 0.995 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.762 -6.810 -10.929 13.170 hybrid contribution 0.370 1.954 -0.148 1.994 sum -2.392 -4.855 -11.078 12.329 Atomic orbital electron populations 1.22017 0.94701 1.02041 1.01780 1.22041 0.94880 0.96570 0.91341 0.93345 1.22025 0.92036 0.98875 0.93447 1.62176 1.11163 1.35375 1.18166 1.19739 0.97150 0.85737 0.90334 1.21252 0.96634 1.14561 1.21884 0.91883 1.24999 0.96324 0.96305 0.97109 1.69971 1.26320 1.21788 1.35926 0.86461 0.83348 0.78071 0.79669 1.19661 1.21201 1.21008 1.21638 0.97964 0.94995 0.91102 1.21636 0.97703 1.01261 0.95349 1.21076 0.88796 0.97703 0.98147 1.59180 1.02368 1.60818 1.05295 1.22386 0.97626 0.98924 0.93017 0.91888 0.91818 0.92937 0.91538 0.90991 0.99542 0.95284 0.93071 0.90913 0.96285 0.90170 0.91438 0.91694 0.96698 0.96165 0.92195 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 7.75 37.16 0.29 -1.77 16 2 C 0.06 1.01 2.42 -68.39 -0.17 0.84 16 3 H 0.05 0.96 6.43 -51.93 -0.33 0.63 16 4 C 0.07 1.23 4.83 -4.47 -0.02 1.21 16 5 N -0.54 -12.15 4.73 -237.14 -1.12 -13.27 16 6 C 0.20 5.21 4.60 -4.98 -0.02 5.19 16 7 C -0.50 -14.48 8.65 -34.44 -0.30 -14.77 16 8 H 0.06 1.80 7.12 -52.49 -0.37 1.42 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 11 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.07 1.43 4.59 -4.31 -0.02 1.41 16 16 C -0.12 -1.94 5.68 -27.07 -0.15 -2.10 16 17 C 0.07 1.07 4.95 -6.56 -0.03 1.04 16 18 N -0.55 -8.26 4.20 -239.95 -1.01 -9.27 16 19 C 0.03 0.34 8.34 60.06 0.50 0.84 16 20 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 21 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 22 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 23 H 0.07 1.27 7.14 -51.93 -0.37 0.90 16 24 H 0.07 1.31 7.20 -51.93 -0.37 0.94 16 25 H -0.01 -0.38 7.73 -51.93 -0.40 -0.78 16 26 H 0.03 0.82 7.70 -51.93 -0.40 0.42 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.07 1.56 7.20 -51.93 -0.37 1.18 16 29 H 0.02 0.41 6.29 -51.93 -0.33 0.08 16 30 H 0.08 1.34 7.19 -51.93 -0.37 0.96 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 33 H 0.01 0.24 7.60 -51.93 -0.39 -0.16 16 34 H 0.02 0.25 7.99 -51.93 -0.41 -0.17 16 35 H 0.06 0.64 7.88 -51.93 -0.41 0.23 16 36 H 0.07 0.79 6.35 -51.93 -0.33 0.46 16 LS Contribution 271.04 15.07 4.08 4.08 Total: -1.00 -30.04 271.04 -8.36 -38.41 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -6.01 Total: -3.84 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -0.02 Total: -6.67 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -1.39 Total: -48.92 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.04 -8.36 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260556183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.735 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds