Wall clock time and date at job start Mon Mar 30 2020 02:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.73389 * 2 1 4 4 C 1.50784 * 109.77500 * 120.68052 * 2 1 3 5 5 N 1.47750 * 111.91261 * 214.28187 * 4 2 1 6 6 C 1.46894 * 111.00184 * 84.93713 * 5 4 2 7 7 C 1.50700 * 109.47142 * 166.34784 * 6 5 4 8 8 H 1.07998 * 119.99687 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00176 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99927 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00146 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47122 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47455 * 119.99870 * 11 9 7 14 14 H 1.48503 * 109.47182 * 240.00124 * 11 9 7 15 15 C 1.48068 * 113.78647 * 318.86989 * 5 4 2 16 16 C 1.50744 * 112.93486 * 318.28914 * 15 5 4 17 17 C 1.54507 * 108.94010 * 92.65809 * 16 15 5 18 18 N 1.40083 * 111.51584 * 283.98078 * 17 16 15 19 19 C 1.46897 * 111.00246 * 188.14158 * 18 17 16 20 20 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46619 * 299.99702 * 1 2 3 22 22 H 1.09003 * 109.47068 * 59.99440 * 1 2 3 23 23 H 1.08999 * 108.98773 * 334.90676 * 4 2 1 24 24 H 1.08991 * 108.99084 * 93.65255 * 4 2 1 25 25 H 1.08993 * 109.47242 * 286.35380 * 6 5 4 26 26 H 1.08998 * 109.47198 * 46.35525 * 6 5 4 27 27 H 0.97001 * 120.00178 * 179.97438 * 10 9 7 28 28 H 1.08998 * 108.79023 * 197.39959 * 15 5 4 29 29 H 1.09000 * 108.79171 * 79.18145 * 15 5 4 30 30 H 1.08992 * 109.56044 * 332.81805 * 16 15 5 31 31 H 1.09005 * 109.64643 * 212.54283 * 16 15 5 32 32 H 1.08999 * 109.07563 * 163.45177 * 17 16 15 33 33 H 1.09004 * 109.07339 * 44.50154 * 17 16 15 34 34 H 1.09002 * 109.47429 * 291.36224 * 19 18 17 35 35 H 1.09003 * 109.47344 * 51.36528 * 19 18 17 36 36 H 1.09001 * 109.47089 * 171.35900 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0402 -0.7240 1.2203 5 7 3.2926 -0.1292 1.7310 6 6 3.0119 1.0028 2.6240 7 6 4.2630 1.3680 3.3805 8 1 5.1755 0.8147 3.2142 9 6 4.2431 2.4092 4.2843 10 7 3.1320 3.0832 4.4864 11 14 5.7940 2.8623 5.2215 12 1 6.8998 1.9581 4.8154 13 1 6.1656 4.2667 4.9142 14 1 5.5498 2.7225 6.6797 15 6 4.2470 0.2580 0.6672 16 6 4.3432 -0.7645 -0.4363 17 6 3.3450 -0.3908 -1.5548 18 7 2.0287 -0.7087 -1.1960 19 6 1.1155 -0.5303 -2.3326 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.2818 -0.6795 2.0019 24 1 2.2220 -1.7675 0.9635 25 1 2.6814 1.8577 2.0341 26 1 2.2293 0.7238 3.3294 27 1 3.1179 3.8155 5.1224 28 1 5.2337 0.3890 1.1114 29 1 3.9284 1.2082 0.2385 30 1 4.0976 -1.7506 -0.0424 31 1 5.3559 -0.7744 -0.8394 32 1 3.6077 -0.9337 -2.4627 33 1 3.4123 0.6797 -1.7493 34 1 1.0288 0.5309 -2.5661 35 1 1.5064 -1.0624 -3.1999 36 1 0.1334 -0.9272 -2.0754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260556183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:47 Heat of formation + Delta-G solvation = -7.247955 kcal Electronic energy + Delta-G solvation = -15099.955060 eV Core-core repulsion = 12811.327840 eV Total energy + Delta-G solvation = -2288.627221 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88018 -37.17892 -34.73334 -34.39161 -31.27862 -28.95792 -28.25967 -25.70901 -25.35698 -23.34931 -21.44986 -20.47094 -18.60710 -17.15299 -16.93550 -16.70614 -16.44497 -15.45534 -15.25517 -14.40543 -14.25972 -14.15912 -13.81790 -13.34123 -13.16897 -12.97658 -12.90057 -12.71343 -12.50106 -12.37324 -12.29532 -11.93295 -11.86432 -11.59453 -11.39136 -11.16774 -10.63462 -9.30513 -8.80111 -8.21783 -6.32873 1.38843 1.39634 1.53631 2.38822 2.94360 3.09269 3.27202 3.88561 3.92413 4.01857 4.16420 4.29836 4.40649 4.55823 4.60764 4.65560 4.68380 4.80620 4.83500 4.87724 4.97395 5.04291 5.08781 5.14082 5.15383 5.25550 5.34283 5.40184 5.65190 6.05252 6.11440 6.34075 6.45678 6.70449 6.84531 7.37344 8.88973 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047133 B = 0.008110 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.920323 B = 3451.770119 C = 3817.469072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.066 3.934 3 H 0.009 0.991 4 C 0.067 3.933 5 N -0.554 5.554 6 C 0.216 3.784 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.971 3.029 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.076 3.924 16 C -0.112 4.112 17 C 0.073 3.927 18 N -0.553 5.553 19 C 0.026 3.974 20 H 0.082 0.918 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.086 0.914 25 H -0.046 1.046 26 H 0.003 0.997 27 H 0.265 0.735 28 H 0.054 0.946 29 H -0.003 1.003 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.001 0.999 34 H 0.017 0.983 35 H 0.082 0.918 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.379 -7.294 -12.677 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 H 0.027 0.973 4 C -0.061 4.061 5 N -0.279 5.279 6 C 0.089 3.911 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.795 3.205 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.201 1.201 15 C -0.051 4.051 16 C -0.150 4.150 17 C -0.056 4.056 18 N -0.278 5.278 19 C -0.120 4.120 20 H 0.101 0.899 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.105 0.895 25 H -0.029 1.029 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.016 0.984 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.019 0.981 34 H 0.035 0.965 35 H 0.101 0.899 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.198 -7.965 -12.206 14.739 hybrid contribution 0.161 2.287 0.205 2.301 sum -2.038 -5.678 -12.001 13.431 Atomic orbital electron populations 1.21962 0.92385 1.03368 1.02111 1.21836 0.96716 0.94124 0.91633 0.97253 1.22058 0.90435 0.99425 0.94231 1.62082 1.13293 1.33175 1.19322 1.19333 0.95706 0.85962 0.90083 1.21542 0.97103 1.15120 1.22603 0.92085 1.25953 0.99919 0.95980 0.97942 1.70097 1.28642 1.22261 1.36573 0.85309 0.79002 0.77985 0.78176 1.18730 1.20373 1.20124 1.21642 0.96146 0.95751 0.91566 1.21598 0.99909 0.99302 0.94198 1.21114 0.88460 0.97355 0.98681 1.59213 1.03011 1.59882 1.05671 1.22502 0.97785 0.99214 0.92542 0.89949 0.93059 0.91119 0.92454 0.89545 1.02879 0.97927 0.92671 0.92724 0.98444 0.90281 0.88802 0.88351 0.98108 0.96487 0.89921 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 7.75 71.98 0.56 -3.22 16 2 C 0.07 2.21 2.42 44.05 0.11 2.32 16 3 H 0.01 0.39 6.43 -2.39 -0.02 0.38 16 4 C 0.07 2.54 4.83 85.42 0.41 2.96 16 5 N -0.55 -25.56 4.73 -904.16 -4.27 -29.83 16 6 C 0.22 12.10 4.60 85.56 0.39 12.49 16 7 C -0.53 -31.07 8.65 25.60 0.22 -30.85 16 8 H 0.06 3.55 7.12 -2.91 -0.02 3.53 16 9 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 10 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 11 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 12 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.08 3.16 4.59 85.35 0.39 3.55 16 16 C -0.11 -3.43 5.68 30.37 0.17 -3.25 16 17 C 0.07 2.01 4.95 88.05 0.44 2.45 16 18 N -0.55 -15.40 4.20 -913.06 -3.84 -19.23 16 19 C 0.03 0.56 8.34 127.69 1.07 1.62 16 20 H 0.08 1.91 7.93 -2.39 -0.02 1.89 16 21 H 0.05 1.49 8.11 -2.39 -0.02 1.47 16 22 H 0.07 1.64 6.55 -2.39 -0.02 1.63 16 23 H 0.06 2.25 7.14 -2.39 -0.02 2.24 16 24 H 0.09 3.05 7.20 -2.39 -0.02 3.03 16 25 H -0.05 -2.85 7.73 -2.39 -0.02 -2.87 16 26 H 0.00 0.16 7.70 -2.39 -0.02 0.14 16 27 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 28 H 0.05 2.40 7.20 -2.39 -0.02 2.39 16 29 H 0.00 -0.12 6.29 -2.39 -0.02 -0.14 16 30 H 0.08 2.47 7.19 -2.39 -0.02 2.45 16 31 H 0.09 2.38 8.14 -2.38 -0.02 2.37 16 32 H 0.10 2.11 7.85 -2.39 -0.02 2.09 16 33 H 0.00 0.03 7.60 -2.39 -0.02 0.01 16 34 H 0.02 0.37 7.99 -2.39 -0.02 0.35 16 35 H 0.08 1.40 7.88 -2.39 -0.02 1.38 16 36 H 0.08 1.57 6.35 -2.39 -0.02 1.55 16 Total: -1.00 -66.47 271.04 -0.55 -67.02 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.03 Total: 3.57 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.22 Total: -11.48 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -7.82 Total: -106.52 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.47 -0.55 -67.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260556183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.768 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds