Wall clock time and date at job start Mon Mar 30 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.46882 * 2 1 4 4 C 1.46846 * 111.00052 * 66.04329 * 3 2 1 5 5 C 1.53040 * 109.52138 * 174.16165 * 4 3 2 6 6 C 1.53118 * 109.27891 * 59.17977 * 5 4 3 7 7 C 1.53110 * 109.16139 * 302.34683 * 6 5 4 8 8 C 1.50702 * 109.50484 * 297.71256 * 7 6 5 9 9 H 1.08004 * 119.99809 * 356.77285 * 8 7 6 10 10 C 1.37876 * 120.00226 * 176.77796 * 8 7 6 11 11 N 1.31514 * 120.00070 * 6.21224 * 10 8 7 12 12 Si 1.86795 * 119.99985 * 186.21471 * 10 8 7 13 13 H 1.48500 * 109.47217 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47373 * 120.00089 * 12 10 8 15 15 H 1.48504 * 109.47225 * 239.99686 * 12 10 8 16 16 C 1.53001 * 109.50399 * 177.63562 * 7 6 5 17 17 N 1.46897 * 109.47541 * 63.60529 * 16 7 6 18 18 C 1.46849 * 110.99702 * 301.83368 * 3 2 1 19 19 H 1.09008 * 109.46966 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47102 * 60.00212 * 1 2 3 21 21 H 1.08996 * 109.47144 * 299.99876 * 1 2 3 22 22 H 1.09003 * 109.47243 * 119.99700 * 2 1 3 23 23 H 1.09004 * 109.47433 * 240.00249 * 2 1 3 24 24 H 1.08995 * 109.46432 * 294.18083 * 4 3 2 25 25 H 1.09000 * 109.46100 * 54.14674 * 4 3 2 26 26 H 1.09000 * 109.49884 * 179.12460 * 5 4 3 27 27 H 1.08998 * 109.50463 * 299.19778 * 5 4 3 28 28 H 1.09003 * 109.51989 * 62.24935 * 6 5 4 29 29 H 1.09000 * 109.52033 * 182.43879 * 6 5 4 30 30 H 0.96999 * 120.00226 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.47139 * 183.60951 * 16 7 6 32 32 H 1.09005 * 109.46683 * 303.60598 * 16 7 6 33 33 H 1.00904 * 110.99450 * 59.65905 * 17 16 7 34 34 H 1.00901 * 111.00574 * 183.61476 * 17 16 7 35 35 H 1.08994 * 109.46431 * 305.85789 * 18 3 2 36 36 H 1.09003 * 109.45721 * 65.82642 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6702 2.0668 1.2528 5 6 2.3183 3.4529 1.2787 6 6 1.8232 4.2650 0.0787 7 6 2.1565 3.5100 -1.2109 8 6 3.6514 3.3675 -1.3385 9 1 4.3015 3.8194 -0.6039 10 6 4.1890 2.6605 -2.3930 11 7 3.4076 2.2149 -3.3524 12 14 6.0273 2.3354 -2.4590 13 1 6.6796 2.9382 -1.2689 14 1 6.2709 0.8706 -2.4690 15 1 6.5929 2.9396 -3.6921 16 6 1.6130 4.2862 -2.4122 17 7 2.2913 5.5860 -2.5030 18 6 1.5132 2.1222 -1.1648 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 0.5873 2.1708 1.3199 25 1 2.0316 1.4810 2.0980 26 1 2.0460 3.9647 2.2018 27 1 3.4020 3.3490 1.2264 28 1 0.7443 4.4023 0.1520 29 1 2.3153 5.2375 0.0691 30 1 3.7857 1.7172 -4.0942 31 1 1.7940 3.7174 -3.3243 32 1 0.5415 4.4433 -2.2886 33 1 3.2873 5.4672 -2.6125 34 1 1.9088 6.1420 -3.2531 35 1 1.7605 1.5767 -2.0754 36 1 0.4309 2.2260 -1.0863 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:06 Heat of formation + Delta-G solvation = -2.547529 kcal Electronic energy + Delta-G solvation = -15692.044439 eV Core-core repulsion = 13403.621045 eV Total energy + Delta-G solvation = -2288.423395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.55082 -35.07165 -32.39359 -31.68971 -29.15585 -28.54730 -24.91965 -24.00745 -23.28597 -21.21184 -19.56712 -18.38479 -15.65900 -15.08666 -14.52894 -14.38349 -13.89720 -13.73481 -13.39894 -13.08282 -12.82312 -12.06341 -11.93197 -11.63587 -11.25247 -11.04794 -11.00477 -10.76259 -10.53920 -10.51445 -10.24887 -9.89970 -9.80157 -9.14246 -8.85549 -8.66511 -8.19056 -7.34096 -7.08114 -5.82980 -3.85377 3.37226 3.46363 3.51061 4.55455 4.94342 5.43605 5.57484 5.70742 5.82886 5.93915 5.98058 6.04469 6.20050 6.23761 6.37644 6.42731 6.57781 6.64264 6.71919 6.79463 6.82865 6.97735 7.15703 7.25855 7.33334 7.38513 7.71251 7.83378 8.14580 8.22149 8.28278 8.55433 8.67569 8.73948 9.10786 9.75149 11.17855 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.014925 C = 0.012323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.288622 B = 1875.590759 C = 2271.635820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 N -0.509 5.509 4 C 0.062 3.938 5 C -0.109 4.109 6 C -0.095 4.095 7 C 0.077 3.923 8 C -0.457 4.457 9 H 0.053 0.947 10 C 0.063 3.937 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.292 1.292 16 C 0.073 3.927 17 N -0.845 5.845 18 C 0.072 3.928 19 H 0.048 0.952 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.015 0.985 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.254 0.746 31 H 0.059 0.941 32 H 0.018 0.982 33 H 0.346 0.654 34 H 0.309 0.691 35 H 0.102 0.898 36 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 -0.949 4.144 5.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.076 4.076 3 N -0.232 5.232 4 C -0.066 4.066 5 C -0.147 4.147 6 C -0.133 4.133 7 C 0.076 3.924 8 C -0.495 4.495 9 H 0.071 0.929 10 C -0.135 4.135 11 N -0.540 5.540 12 Si 0.715 3.285 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.219 1.219 16 C -0.058 4.058 17 N -0.373 5.373 18 C -0.056 4.056 19 H 0.067 0.933 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.160 0.840 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -3.648 -0.949 4.698 6.023 hybrid contribution 0.314 -0.696 -0.961 1.227 sum -3.334 -1.644 3.737 5.271 Atomic orbital electron populations 1.22446 0.99658 1.00926 1.01813 1.22090 0.91731 0.92279 1.01458 1.61995 1.58678 1.00339 1.02162 1.21973 0.96241 0.95814 0.92589 1.21522 1.01967 0.94215 0.96997 1.21493 0.97064 0.98961 0.95753 1.18153 0.95631 0.89107 0.89540 1.20876 0.90305 1.30496 1.07851 0.92868 1.24806 0.96977 0.95987 0.95754 1.69783 1.34082 1.39252 1.10843 0.86643 0.86717 0.77852 0.77271 1.20081 1.21413 1.21921 1.21747 0.93309 0.89276 1.01514 1.58812 1.09698 1.18439 1.50348 1.22195 0.91963 0.98090 0.93323 0.93329 0.92317 0.93253 0.92279 0.91237 0.96737 0.92935 0.94338 0.90729 0.95783 0.92188 0.93582 0.92285 0.96366 0.83982 0.88200 0.88024 0.99352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 9.21 37.16 0.34 -2.71 16 2 C 0.05 0.97 6.08 -3.82 -0.02 0.95 16 3 N -0.51 -10.85 4.46 -234.66 -1.05 -11.90 16 4 C 0.06 1.20 5.05 -3.83 -0.02 1.18 16 5 C -0.11 -2.17 5.83 -26.65 -0.16 -2.33 16 6 C -0.09 -2.05 4.59 -26.61 -0.12 -2.17 16 7 C 0.08 1.79 0.33 -155.58 -0.05 1.74 16 8 C -0.46 -11.65 5.61 -34.44 -0.19 -11.85 16 9 H 0.05 1.42 7.00 -52.48 -0.37 1.05 16 10 C 0.06 1.65 5.12 -17.82 -0.09 1.56 16 11 N -0.90 -23.86 9.44 55.43 0.52 -23.34 16 12 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 C 0.07 1.68 5.51 -3.83 -0.02 1.66 16 17 N -0.85 -17.78 8.99 -10.37 -0.09 -17.88 16 18 C 0.07 1.66 3.32 -3.83 -0.01 1.65 16 19 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 20 H 0.06 1.02 6.50 -51.93 -0.34 0.68 16 21 H 0.05 0.77 6.68 -51.93 -0.35 0.43 16 22 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 23 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.01 0.27 6.75 -51.93 -0.35 -0.08 16 25 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.61 6.89 -51.93 -0.36 1.26 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 1.33 7.79 -51.93 -0.40 0.93 16 30 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.06 1.50 6.20 -51.93 -0.32 1.18 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.35 7.73 7.87 -39.29 -0.31 7.42 16 34 H 0.31 5.72 9.08 -39.29 -0.36 5.37 16 35 H 0.10 2.62 6.04 -51.93 -0.31 2.31 16 36 H -0.01 -0.26 6.61 -51.93 -0.34 -0.60 16 LS Contribution 266.96 15.07 4.02 4.02 Total: -1.00 -26.11 266.96 -7.86 -33.96 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.90 Total: 9.29 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.35 Total: -10.33 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.62 Total: -53.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.11 -7.86 -33.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.417 kcal (2) G-P(sol) polarization free energy of solvation -26.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds