Wall clock time and date at job start Mon Mar 30 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.46882 * 2 1 4 4 C 1.46846 * 111.00052 * 66.04329 * 3 2 1 5 5 C 1.53040 * 109.52138 * 174.16165 * 4 3 2 6 6 C 1.53118 * 109.27891 * 59.17977 * 5 4 3 7 7 C 1.53110 * 109.16139 * 302.34683 * 6 5 4 8 8 C 1.50702 * 109.50484 * 297.71256 * 7 6 5 9 9 H 1.08004 * 119.99809 * 356.77285 * 8 7 6 10 10 C 1.37876 * 120.00226 * 176.77796 * 8 7 6 11 11 N 1.31514 * 120.00070 * 6.21224 * 10 8 7 12 12 Si 1.86795 * 119.99985 * 186.21471 * 10 8 7 13 13 H 1.48500 * 109.47217 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47373 * 120.00089 * 12 10 8 15 15 H 1.48504 * 109.47225 * 239.99686 * 12 10 8 16 16 C 1.53001 * 109.50399 * 177.63562 * 7 6 5 17 17 N 1.46897 * 109.47541 * 63.60529 * 16 7 6 18 18 C 1.46849 * 110.99702 * 301.83368 * 3 2 1 19 19 H 1.09008 * 109.46966 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47102 * 60.00212 * 1 2 3 21 21 H 1.08996 * 109.47144 * 299.99876 * 1 2 3 22 22 H 1.09003 * 109.47243 * 119.99700 * 2 1 3 23 23 H 1.09004 * 109.47433 * 240.00249 * 2 1 3 24 24 H 1.08995 * 109.46432 * 294.18083 * 4 3 2 25 25 H 1.09000 * 109.46100 * 54.14674 * 4 3 2 26 26 H 1.09000 * 109.49884 * 179.12460 * 5 4 3 27 27 H 1.08998 * 109.50463 * 299.19778 * 5 4 3 28 28 H 1.09003 * 109.51989 * 62.24935 * 6 5 4 29 29 H 1.09000 * 109.52033 * 182.43879 * 6 5 4 30 30 H 0.96999 * 120.00226 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.47139 * 183.60951 * 16 7 6 32 32 H 1.09005 * 109.46683 * 303.60598 * 16 7 6 33 33 H 1.00904 * 110.99450 * 59.65905 * 17 16 7 34 34 H 1.00901 * 111.00574 * 183.61476 * 17 16 7 35 35 H 1.08994 * 109.46431 * 305.85789 * 18 3 2 36 36 H 1.09003 * 109.45721 * 65.82642 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6702 2.0668 1.2528 5 6 2.3183 3.4529 1.2787 6 6 1.8232 4.2650 0.0787 7 6 2.1565 3.5100 -1.2109 8 6 3.6514 3.3675 -1.3385 9 1 4.3015 3.8194 -0.6039 10 6 4.1890 2.6605 -2.3930 11 7 3.4076 2.2149 -3.3524 12 14 6.0273 2.3354 -2.4590 13 1 6.6796 2.9382 -1.2689 14 1 6.2709 0.8706 -2.4690 15 1 6.5929 2.9396 -3.6921 16 6 1.6130 4.2862 -2.4122 17 7 2.2913 5.5860 -2.5030 18 6 1.5132 2.1222 -1.1648 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 0.5873 2.1708 1.3199 25 1 2.0316 1.4810 2.0980 26 1 2.0460 3.9647 2.2018 27 1 3.4020 3.3490 1.2264 28 1 0.7443 4.4023 0.1520 29 1 2.3153 5.2375 0.0691 30 1 3.7857 1.7172 -4.0942 31 1 1.7940 3.7174 -3.3243 32 1 0.5415 4.4433 -2.2886 33 1 3.2873 5.4672 -2.6125 34 1 1.9088 6.1420 -3.2531 35 1 1.7605 1.5767 -2.0754 36 1 0.4309 2.2260 -1.0863 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:06 Heat of formation + Delta-G solvation = -20.217700 kcal Electronic energy + Delta-G solvation = -15692.810675 eV Core-core repulsion = 13403.621045 eV Total energy + Delta-G solvation = -2289.189631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23167 -36.77241 -34.07902 -33.56133 -30.90421 -30.04373 -26.90206 -25.59553 -24.99134 -22.81611 -21.25212 -20.17931 -17.50259 -16.88688 -16.41217 -15.97451 -15.52282 -15.27971 -15.16958 -14.76776 -14.50373 -13.66535 -13.57666 -13.13153 -13.09713 -12.88204 -12.56581 -12.48085 -12.40535 -12.23933 -11.90161 -11.71075 -11.40866 -10.85954 -10.63291 -10.57224 -10.16670 -9.11923 -8.69423 -7.82339 -5.88607 1.43974 1.50466 1.57671 2.57574 3.39030 3.42978 4.16607 4.25794 4.31454 4.33214 4.49622 4.55346 4.65706 4.75147 4.82582 4.89016 5.01429 5.05373 5.08974 5.13816 5.25982 5.35285 5.39406 5.52663 5.55484 5.65739 5.81616 5.94084 6.24609 6.48295 6.68397 6.76494 6.78057 6.98697 7.16448 7.72583 9.15362 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.014925 C = 0.012323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.288622 B = 1875.590759 C = 2271.635820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.064 3.936 5 C -0.106 4.106 6 C -0.090 4.090 7 C 0.069 3.931 8 C -0.452 4.452 9 H 0.038 0.962 10 C 0.031 3.969 11 N -0.911 5.911 12 Si 0.930 3.070 13 H -0.277 1.277 14 H -0.295 1.295 15 H -0.292 1.292 16 C 0.079 3.921 17 N -0.838 5.838 18 C 0.086 3.914 19 H 0.073 0.927 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.024 0.976 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.049 0.951 30 H 0.250 0.750 31 H 0.033 0.967 32 H 0.024 0.976 33 H 0.339 0.661 34 H 0.325 0.675 35 H 0.070 0.930 36 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -1.055 5.478 7.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.077 4.077 3 N -0.256 5.256 4 C -0.064 4.064 5 C -0.144 4.144 6 C -0.127 4.127 7 C 0.068 3.932 8 C -0.491 4.491 9 H 0.057 0.943 10 C -0.166 4.166 11 N -0.553 5.553 12 Si 0.759 3.241 13 H -0.202 1.202 14 H -0.222 1.222 15 H -0.218 1.218 16 C -0.053 4.053 17 N -0.366 5.366 18 C -0.043 4.043 19 H 0.091 0.909 20 H 0.059 0.941 21 H 0.076 0.924 22 H 0.098 0.902 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -4.148 -1.044 6.035 7.397 hybrid contribution 0.459 -0.654 -1.367 1.584 sum -3.689 -1.699 4.667 6.187 Atomic orbital electron populations 1.22315 0.97777 1.02417 1.01228 1.22124 0.93319 0.90647 1.01621 1.61920 1.59682 1.01639 1.02394 1.22003 0.96792 0.95441 0.92147 1.21489 1.00576 0.94858 0.97471 1.21398 0.97280 0.98441 0.95624 1.18229 0.94489 0.89857 0.90657 1.20906 0.91326 1.29843 1.07034 0.94336 1.25222 0.99179 0.96353 0.95878 1.69910 1.34718 1.39693 1.11000 0.85956 0.84109 0.76993 0.76995 1.20179 1.22188 1.21845 1.21608 0.93723 0.89652 1.00269 1.58765 1.09093 1.17582 1.51187 1.21886 0.91832 0.97479 0.93059 0.90850 0.94131 0.92450 0.90232 0.92974 0.95775 0.90834 0.91403 0.92855 0.95208 0.93183 0.94066 0.94927 0.95796 0.84769 0.86469 0.91172 0.99276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.34 9.21 71.98 0.66 -4.68 16 2 C 0.05 1.79 6.08 86.30 0.52 2.31 16 3 N -0.53 -22.02 4.46 -896.34 -4.00 -26.02 16 4 C 0.06 2.29 5.05 86.33 0.44 2.72 16 5 C -0.11 -3.99 5.83 30.65 0.18 -3.81 16 6 C -0.09 -3.74 4.59 30.67 0.14 -3.60 16 7 C 0.07 3.18 0.33 -52.88 -0.02 3.16 16 8 C -0.45 -23.05 5.61 25.60 0.14 -22.90 16 9 H 0.04 2.05 7.00 -2.91 -0.02 2.03 16 10 C 0.03 1.60 5.12 84.65 0.43 2.03 16 11 N -0.91 -48.98 9.44 21.45 0.20 -48.78 16 12 Si 0.93 43.62 29.54 68.60 2.03 45.64 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 15 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 16 C 0.08 3.63 5.51 86.30 0.48 4.10 16 17 N -0.84 -34.70 8.99 -186.72 -1.68 -36.38 16 18 C 0.09 3.93 3.32 86.33 0.29 4.21 16 19 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 20 H 0.04 1.35 6.50 -2.39 -0.02 1.33 16 21 H 0.06 1.62 6.68 -2.39 -0.02 1.60 16 22 H 0.08 2.43 8.06 -2.39 -0.02 2.41 16 23 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.02 0.83 6.75 -2.39 -0.02 0.81 16 25 H 0.07 2.32 8.06 -2.39 -0.02 2.30 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 2.23 6.89 -2.39 -0.02 2.21 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 2.16 7.79 -2.39 -0.02 2.14 16 30 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 31 H 0.03 1.67 6.20 -2.39 -0.01 1.66 16 32 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.34 15.05 7.87 -89.69 -0.71 14.34 16 34 H 0.33 11.69 9.08 -89.69 -0.81 10.87 16 35 H 0.07 3.67 6.04 -2.39 -0.01 3.65 16 36 H -0.01 -0.48 6.61 -2.39 -0.02 -0.49 16 Total: -1.00 -54.41 266.96 -0.64 -55.05 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.45 Total: 26.93 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 3.26 Total: -16.45 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -5.48 Total: -111.18 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -54.41 -0.64 -55.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.834 kcal (2) G-P(sol) polarization free energy of solvation -54.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds