Wall clock time and date at job start Mon Mar 30 2020 03:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46871 * 2 1 4 4 C 1.46841 * 111.00496 * 66.04026 * 3 2 1 5 5 C 1.53040 * 109.52871 * 185.84116 * 4 3 2 6 6 C 1.53114 * 109.27417 * 300.82269 * 5 4 3 7 7 C 1.53118 * 109.16527 * 57.65385 * 6 5 4 8 8 C 1.50697 * 109.50246 * 62.28187 * 7 6 5 9 9 H 1.08002 * 120.00625 * 3.73384 * 8 7 6 10 10 C 1.37880 * 120.00278 * 183.73566 * 8 7 6 11 11 N 1.31524 * 119.99647 * 353.05594 * 10 8 7 12 12 Si 1.86800 * 120.00415 * 173.05770 * 10 8 7 13 13 H 1.48500 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.47047 * 299.99859 * 12 10 8 15 15 H 1.48497 * 109.46907 * 59.99627 * 12 10 8 16 16 C 1.53000 * 109.50866 * 182.36261 * 7 6 5 17 17 N 1.46904 * 109.47090 * 302.73298 * 16 7 6 18 18 C 1.46850 * 111.00171 * 190.25461 * 3 2 1 19 19 H 1.08997 * 109.47043 * 60.00571 * 1 2 3 20 20 H 1.09002 * 109.46609 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47103 * 300.00318 * 1 2 3 22 22 H 1.08991 * 109.47549 * 239.99847 * 2 1 3 23 23 H 1.08997 * 109.47043 * 119.99429 * 2 1 3 24 24 H 1.09007 * 109.45937 * 65.82415 * 4 3 2 25 25 H 1.08997 * 109.46585 * 305.86204 * 4 3 2 26 26 H 1.08994 * 109.50564 * 180.88411 * 5 4 3 27 27 H 1.08998 * 109.53395 * 60.77954 * 5 4 3 28 28 H 1.09000 * 109.53056 * 297.74571 * 6 5 4 29 29 H 1.09003 * 109.57419 * 177.59126 * 6 5 4 30 30 H 0.97001 * 119.99762 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.46843 * 62.73249 * 16 7 6 32 32 H 1.09003 * 109.47356 * 182.72998 * 16 7 6 33 33 H 1.00896 * 110.99903 * 173.65805 * 17 16 7 34 34 H 1.00894 * 110.99874 * 297.61753 * 17 16 7 35 35 H 1.09004 * 109.46131 * 54.14157 * 18 3 2 36 36 H 1.09002 * 109.46036 * 294.17751 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0668 1.2527 5 6 2.0654 3.5424 1.1595 6 6 3.5711 3.6471 0.9025 7 6 3.9158 2.8882 -0.3820 8 6 3.2057 3.5251 -1.5486 9 1 2.6203 4.4206 -1.4010 10 6 3.3032 2.9646 -2.8046 11 7 4.1225 1.9571 -3.0132 12 14 2.2720 3.6363 -4.2098 13 1 2.5599 2.8668 -5.4469 14 1 0.8316 3.5095 -3.8714 15 1 2.6050 5.0668 -4.4285 16 6 5.4271 2.9379 -0.6149 17 7 5.8671 4.3381 -0.6776 18 6 3.4670 1.4316 -0.2441 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 2.2029 1.5998 2.0812 25 1 0.5963 1.9884 1.4216 26 1 1.8202 4.0446 2.0953 27 1 1.5227 4.0140 0.3403 28 1 4.1150 3.2109 1.7403 29 1 3.8509 4.6949 0.7926 30 1 4.1908 1.5625 -3.8967 31 1 5.9379 2.4329 0.2049 32 1 5.6666 2.4394 -1.5542 33 1 6.8730 4.3992 -0.7273 34 1 5.4369 4.8179 -1.4540 35 1 3.6979 0.8919 -1.1625 36 1 3.9912 0.9675 0.5914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:09 Heat of formation + Delta-G solvation = -2.889233 kcal Electronic energy + Delta-G solvation = -15614.067360 eV Core-core repulsion = 13325.629148 eV Total energy + Delta-G solvation = -2288.438212 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.41011 -35.00044 -32.30292 -31.75970 -29.46382 -28.71185 -24.88422 -24.00132 -22.65908 -21.37620 -19.56689 -18.49181 -15.51270 -15.24926 -14.61138 -14.48513 -14.27468 -13.40668 -13.32097 -13.04515 -12.46572 -12.31189 -12.05399 -11.44036 -11.15660 -11.06300 -10.98255 -10.68787 -10.58947 -10.44120 -10.34114 -9.98596 -9.79343 -9.10482 -8.85103 -8.68872 -8.16334 -7.37708 -7.11170 -5.82462 -3.85296 3.39957 3.44235 3.50143 4.55792 4.88527 5.44012 5.58297 5.79117 5.88340 5.95993 6.01377 6.02856 6.19412 6.26320 6.38452 6.51709 6.61732 6.63522 6.72528 6.77117 6.83364 6.98609 7.15826 7.26779 7.34359 7.38580 7.73160 7.82983 8.14387 8.22673 8.28372 8.51931 8.65821 8.70584 9.10120 9.75519 11.18193 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.016216 C = 0.011876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.107865 B = 1726.271872 C = 2357.140278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 N -0.510 5.510 4 C 0.062 3.938 5 C -0.109 4.109 6 C -0.093 4.093 7 C 0.079 3.921 8 C -0.460 4.460 9 H 0.052 0.948 10 C 0.065 3.935 11 N -0.899 5.899 12 Si 0.885 3.115 13 H -0.293 1.293 14 H -0.278 1.278 15 H -0.283 1.283 16 C 0.070 3.930 17 N -0.846 5.846 18 C 0.072 3.928 19 H 0.061 0.939 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.068 0.932 23 H 0.014 0.986 24 H 0.010 0.990 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.255 0.745 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.311 0.689 34 H 0.344 0.656 35 H 0.102 0.898 36 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 -1.411 4.843 5.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 N -0.234 5.234 4 C -0.066 4.066 5 C -0.147 4.147 6 C -0.131 4.131 7 C 0.078 3.922 8 C -0.498 4.498 9 H 0.070 0.930 10 C -0.134 4.134 11 N -0.540 5.540 12 Si 0.714 3.286 13 H -0.219 1.219 14 H -0.204 1.204 15 H -0.209 1.209 16 C -0.061 4.061 17 N -0.374 5.374 18 C -0.055 4.055 19 H 0.080 0.920 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.032 0.968 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.120 0.880 36 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges -2.786 -1.221 5.020 5.870 hybrid contribution 0.175 -0.519 -1.059 1.192 sum -2.611 -1.740 3.961 5.053 Atomic orbital electron populations 1.21782 0.96127 1.00178 1.02137 1.21971 0.95097 0.90933 0.99501 1.61782 1.16612 1.12531 1.32472 1.22013 0.98677 0.95691 0.90267 1.21522 0.98621 0.94817 0.99734 1.21467 0.93192 1.01042 0.97426 1.18119 0.91135 0.90563 0.92385 1.20810 1.28036 1.09548 0.91417 0.92992 1.24799 0.95128 0.95184 0.98262 1.69749 1.36998 1.25283 1.21951 0.86779 0.81611 0.78443 0.81747 1.21939 1.20426 1.20878 1.21810 0.97227 0.87670 0.99424 1.58788 1.09420 1.16740 1.52414 1.22195 0.83974 1.00430 0.98947 0.91965 0.93476 0.93223 0.91330 0.96814 0.97189 0.92494 0.94343 0.90739 0.95797 0.92068 0.93445 0.96302 0.91811 0.88032 0.84311 0.87956 0.99889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.85 37.16 0.37 -1.94 16 2 C 0.05 1.00 5.68 -3.82 -0.02 0.98 16 3 N -0.51 -11.03 4.26 -234.67 -1.00 -12.03 16 4 C 0.06 1.21 5.29 -3.84 -0.02 1.19 16 5 C -0.11 -2.19 5.83 -26.65 -0.16 -2.34 16 6 C -0.09 -2.03 4.51 -26.61 -0.12 -2.15 16 7 C 0.08 1.86 0.33 -155.58 -0.05 1.81 16 8 C -0.46 -11.78 5.92 -34.44 -0.20 -11.98 16 9 H 0.05 1.38 7.02 -52.49 -0.37 1.01 16 10 C 0.06 1.70 5.12 -17.81 -0.09 1.61 16 11 N -0.90 -23.98 9.39 55.43 0.52 -23.46 16 12 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.07 1.61 5.58 -3.82 -0.02 1.59 16 17 N -0.85 -17.56 8.72 -10.36 -0.09 -17.65 16 18 C 0.07 1.70 3.94 -3.83 -0.02 1.69 16 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.75 6.44 -51.93 -0.33 0.41 16 22 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 23 H 0.01 0.25 8.12 -51.93 -0.42 -0.18 16 24 H 0.01 0.19 8.14 -51.92 -0.42 -0.23 16 25 H 0.06 1.01 6.22 -51.93 -0.32 0.69 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.62 6.90 -51.93 -0.36 1.26 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 1.36 7.62 -51.93 -0.40 0.97 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.62 6.05 -51.93 -0.31 1.31 16 33 H 0.31 5.64 9.08 -39.29 -0.36 5.29 16 34 H 0.34 7.50 8.17 -39.30 -0.32 7.18 16 35 H 0.10 2.66 5.92 -51.93 -0.31 2.35 16 36 H -0.02 -0.39 8.14 -51.93 -0.42 -0.82 16 LS Contribution 270.11 15.07 4.07 4.07 Total: -1.00 -26.27 270.11 -7.86 -34.14 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.01 Total: 8.31 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.33 Total: -9.56 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.57 Total: -53.14 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.27 -7.86 -34.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.248 kcal (2) G-P(sol) polarization free energy of solvation -26.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds