Wall clock time and date at job start Mon Mar 30 2020 03:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46871 * 2 1 4 4 C 1.46841 * 111.00496 * 66.04026 * 3 2 1 5 5 C 1.53040 * 109.52871 * 185.84116 * 4 3 2 6 6 C 1.53114 * 109.27417 * 300.82269 * 5 4 3 7 7 C 1.53118 * 109.16527 * 57.65385 * 6 5 4 8 8 C 1.50697 * 109.50246 * 62.28187 * 7 6 5 9 9 H 1.08002 * 120.00625 * 3.73384 * 8 7 6 10 10 C 1.37880 * 120.00278 * 183.73566 * 8 7 6 11 11 N 1.31524 * 119.99647 * 353.05594 * 10 8 7 12 12 Si 1.86800 * 120.00415 * 173.05770 * 10 8 7 13 13 H 1.48500 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.47047 * 299.99859 * 12 10 8 15 15 H 1.48497 * 109.46907 * 59.99627 * 12 10 8 16 16 C 1.53000 * 109.50866 * 182.36261 * 7 6 5 17 17 N 1.46904 * 109.47090 * 302.73298 * 16 7 6 18 18 C 1.46850 * 111.00171 * 190.25461 * 3 2 1 19 19 H 1.08997 * 109.47043 * 60.00571 * 1 2 3 20 20 H 1.09002 * 109.46609 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47103 * 300.00318 * 1 2 3 22 22 H 1.08991 * 109.47549 * 239.99847 * 2 1 3 23 23 H 1.08997 * 109.47043 * 119.99429 * 2 1 3 24 24 H 1.09007 * 109.45937 * 65.82415 * 4 3 2 25 25 H 1.08997 * 109.46585 * 305.86204 * 4 3 2 26 26 H 1.08994 * 109.50564 * 180.88411 * 5 4 3 27 27 H 1.08998 * 109.53395 * 60.77954 * 5 4 3 28 28 H 1.09000 * 109.53056 * 297.74571 * 6 5 4 29 29 H 1.09003 * 109.57419 * 177.59126 * 6 5 4 30 30 H 0.97001 * 119.99762 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.46843 * 62.73249 * 16 7 6 32 32 H 1.09003 * 109.47356 * 182.72998 * 16 7 6 33 33 H 1.00896 * 110.99903 * 173.65805 * 17 16 7 34 34 H 1.00894 * 110.99874 * 297.61753 * 17 16 7 35 35 H 1.09004 * 109.46131 * 54.14157 * 18 3 2 36 36 H 1.09002 * 109.46036 * 294.17751 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0668 1.2527 5 6 2.0654 3.5424 1.1595 6 6 3.5711 3.6471 0.9025 7 6 3.9158 2.8882 -0.3820 8 6 3.2057 3.5251 -1.5486 9 1 2.6203 4.4206 -1.4010 10 6 3.3032 2.9646 -2.8046 11 7 4.1225 1.9571 -3.0132 12 14 2.2720 3.6363 -4.2098 13 1 2.5599 2.8668 -5.4469 14 1 0.8316 3.5095 -3.8714 15 1 2.6050 5.0668 -4.4285 16 6 5.4271 2.9379 -0.6149 17 7 5.8671 4.3381 -0.6776 18 6 3.4670 1.4316 -0.2441 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 2.2029 1.5998 2.0812 25 1 0.5963 1.9884 1.4216 26 1 1.8202 4.0446 2.0953 27 1 1.5227 4.0140 0.3403 28 1 4.1150 3.2109 1.7403 29 1 3.8509 4.6949 0.7926 30 1 4.1908 1.5625 -3.8967 31 1 5.9379 2.4329 0.2049 32 1 5.6666 2.4394 -1.5542 33 1 6.8730 4.3992 -0.7273 34 1 5.4369 4.8179 -1.4540 35 1 3.6979 0.8919 -1.1625 36 1 3.9912 0.9675 0.5914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:09 Heat of formation + Delta-G solvation = -20.418281 kcal Electronic energy + Delta-G solvation = -15614.827477 eV Core-core repulsion = 13325.629148 eV Total energy + Delta-G solvation = -2289.198329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12374 -36.70540 -34.02144 -33.60262 -31.14218 -30.30906 -26.85730 -25.67375 -24.34649 -22.99500 -21.19327 -20.35333 -17.43857 -16.95393 -16.44162 -16.20404 -15.83511 -15.18488 -14.96104 -14.83505 -14.08503 -13.90233 -13.66233 -13.22530 -12.86871 -12.72774 -12.61295 -12.52541 -12.41848 -12.15165 -11.86971 -11.78814 -11.53232 -10.81893 -10.65452 -10.59355 -10.14648 -9.14273 -8.76684 -7.82536 -5.89418 1.46712 1.50100 1.55231 2.57564 3.31771 3.42014 4.12819 4.23546 4.31448 4.40925 4.45291 4.59943 4.68831 4.72369 4.80878 4.89765 4.98302 5.07892 5.09298 5.17512 5.26301 5.36707 5.41175 5.51606 5.53797 5.65128 5.81093 5.94629 6.23074 6.47868 6.65408 6.72032 6.76278 6.97409 7.14607 7.72141 9.14776 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.016216 C = 0.011876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.107865 B = 1726.271872 C = 2357.140278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.063 3.937 5 C -0.106 4.106 6 C -0.088 4.088 7 C 0.072 3.928 8 C -0.457 4.457 9 H 0.040 0.960 10 C 0.031 3.969 11 N -0.912 5.912 12 Si 0.929 3.071 13 H -0.297 1.297 14 H -0.285 1.285 15 H -0.278 1.278 16 C 0.077 3.923 17 N -0.838 5.838 18 C 0.082 3.918 19 H 0.046 0.954 20 H 0.073 0.927 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.025 0.975 24 H 0.017 0.983 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.027 0.973 29 H 0.053 0.947 30 H 0.250 0.750 31 H 0.022 0.978 32 H 0.037 0.963 33 H 0.327 0.673 34 H 0.338 0.662 35 H 0.073 0.927 36 H -0.019 1.019 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.140 -1.248 5.936 6.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 N -0.255 5.255 4 C -0.065 4.065 5 C -0.144 4.144 6 C -0.126 4.126 7 C 0.071 3.929 8 C -0.495 4.495 9 H 0.058 0.942 10 C -0.166 4.166 11 N -0.553 5.553 12 Si 0.758 3.242 13 H -0.223 1.223 14 H -0.211 1.211 15 H -0.204 1.204 16 C -0.055 4.055 17 N -0.366 5.366 18 C -0.047 4.047 19 H 0.065 0.935 20 H 0.092 0.908 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.091 0.909 36 H -0.001 1.001 Dipole moment (debyes) X Y Z Total from point charges -3.672 -1.049 6.121 7.215 hybrid contribution 0.474 -0.575 -1.375 1.564 sum -3.198 -1.624 4.747 5.950 Atomic orbital electron populations 1.21711 0.93737 1.01946 1.01887 1.22037 0.96991 0.89452 0.99234 1.61756 1.15195 1.14502 1.34094 1.22058 1.00073 0.94948 0.89416 1.21490 0.96903 0.95504 1.00470 1.21372 0.94666 1.00104 0.96422 1.18183 0.91145 0.90858 0.92737 1.20869 1.27559 1.08951 0.92129 0.94213 1.25235 0.95937 0.95619 0.99788 1.69884 1.37747 1.25971 1.21745 0.86085 0.80104 0.78098 0.79899 1.22296 1.21090 1.20397 1.21647 0.97233 0.88522 0.98109 1.58733 1.10720 1.15225 1.51936 1.21948 0.85556 0.99772 0.97377 0.93516 0.90787 0.92031 0.92993 0.95649 0.96513 0.90296 0.91342 0.92708 0.95411 0.92848 0.94010 0.95928 0.94477 0.86232 0.84917 0.90908 1.00148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.85 71.98 0.71 -3.26 16 2 C 0.05 1.83 5.68 86.30 0.49 2.33 16 3 N -0.53 -22.36 4.26 -896.36 -3.82 -26.18 16 4 C 0.06 2.29 5.29 86.33 0.46 2.75 16 5 C -0.11 -4.01 5.83 30.65 0.18 -3.83 16 6 C -0.09 -3.69 4.51 30.67 0.14 -3.55 16 7 C 0.07 3.35 0.33 -52.88 -0.02 3.34 16 8 C -0.46 -23.33 5.92 25.60 0.15 -23.18 16 9 H 0.04 2.10 7.02 -2.91 -0.02 2.08 16 10 C 0.03 1.63 5.12 84.65 0.43 2.07 16 11 N -0.91 -49.27 9.39 21.45 0.20 -49.06 16 12 Si 0.93 43.55 29.54 68.60 2.03 45.58 16 13 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 C 0.08 3.51 5.58 86.30 0.48 3.99 16 17 N -0.84 -34.11 8.72 -186.70 -1.63 -35.73 16 18 C 0.08 3.84 3.94 86.33 0.34 4.18 16 19 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.06 1.65 6.44 -2.39 -0.02 1.64 16 22 H 0.05 2.01 7.98 -2.39 -0.02 1.99 16 23 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 24 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.08 2.53 6.22 -2.39 -0.01 2.52 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.05 2.29 6.90 -2.39 -0.02 2.28 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 2.30 7.62 -2.39 -0.02 2.28 16 30 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 1.91 6.05 -2.39 -0.01 1.90 16 33 H 0.33 11.49 9.08 -89.70 -0.81 10.68 16 34 H 0.34 14.59 8.17 -89.70 -0.73 13.85 16 35 H 0.07 3.85 5.92 -2.38 -0.01 3.84 16 36 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 Total: -1.00 -54.76 270.11 -0.34 -55.10 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.49 Total: 25.46 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 3.36 Total: -15.17 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -5.25 Total: -110.98 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -54.76 -0.34 -55.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.685 kcal (2) G-P(sol) polarization free energy of solvation -54.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds