Wall clock time and date at job start Mon Mar 30 2020 03:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.46757 * 2 1 4 4 C 1.47805 * 110.99787 * 291.98121 * 3 2 1 5 5 C 1.45857 * 112.91763 * 153.86831 * 4 3 2 6 6 C 1.54503 * 111.59169 * 61.32419 * 5 4 3 7 7 C 1.50459 * 108.85663 * 282.80553 * 6 5 4 8 8 N 1.46901 * 108.67662 * 331.30312 * 7 6 5 9 9 C 1.50695 * 108.77516 * 213.07083 * 7 6 5 10 10 H 1.08000 * 120.00034 * 239.01235 * 9 7 6 11 11 C 1.37886 * 119.99935 * 58.73897 * 9 7 6 12 12 N 1.31513 * 119.99422 * 5.48921 * 11 9 7 13 13 Si 1.86794 * 119.99890 * 185.48896 * 11 9 7 14 14 H 1.48496 * 109.47248 * 94.98751 * 13 11 9 15 15 H 1.48507 * 109.46867 * 214.98661 * 13 11 9 16 16 H 1.48495 * 109.47438 * 334.98549 * 13 11 9 17 17 C 1.54294 * 113.03041 * 92.15181 * 7 6 5 18 18 C 1.44262 * 111.00062 * 169.99855 * 3 2 1 19 19 H 1.09000 * 109.47233 * 60.00490 * 1 2 3 20 20 H 1.09000 * 109.46721 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47480 * 300.00221 * 1 2 3 22 22 H 1.08999 * 109.47480 * 239.99779 * 2 1 3 23 23 H 1.09005 * 109.46811 * 119.99309 * 2 1 3 24 24 H 1.09003 * 108.79050 * 274.75296 * 4 3 2 25 25 H 1.08998 * 108.79017 * 33.09140 * 4 3 2 26 26 H 1.08999 * 109.05326 * 181.86980 * 5 4 3 27 27 H 1.09000 * 109.05890 * 300.85069 * 5 4 3 28 28 H 1.09005 * 109.57320 * 162.99646 * 6 5 4 29 29 H 1.08998 * 109.57781 * 42.61984 * 6 5 4 30 30 H 1.00898 * 111.00376 * 301.74381 * 8 7 6 31 31 H 1.00905 * 111.00196 * 65.70325 * 8 7 6 32 32 H 0.97007 * 119.99677 * 180.02562 * 12 11 9 33 33 H 1.09007 * 108.91752 * 79.03339 * 17 7 6 34 34 H 1.09010 * 108.91711 * 197.58013 * 17 7 6 35 35 H 1.08999 * 108.98381 * 98.66238 * 18 3 2 36 36 H 1.09000 * 108.91208 * 339.91007 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7091 2.0566 -1.2796 5 6 1.6003 3.5052 -1.1491 6 6 2.9256 4.1334 -0.6632 7 6 3.0632 3.8952 0.8160 8 7 1.7204 3.8054 1.4049 9 6 3.7841 5.0669 1.4310 10 1 4.7128 4.9123 1.9602 11 6 3.2610 6.3373 1.3132 12 7 2.0813 6.5137 0.7593 13 14 4.2280 7.8073 1.9402 14 1 5.0009 8.4049 0.8218 15 1 3.2898 8.8189 2.4897 16 1 5.1618 7.3669 3.0075 17 6 3.8392 2.6040 1.1499 18 6 3.4424 1.4305 0.2339 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.4971 1.8268 -1.9969 25 1 0.7645 1.6679 -1.6599 26 1 1.3386 3.9311 -2.1177 27 1 0.8129 3.7399 -0.4329 28 1 2.9158 5.2053 -0.8611 29 1 3.7624 3.6713 -1.1869 30 1 1.1917 4.6467 1.2299 31 1 1.2296 2.9924 1.0639 32 1 1.7134 7.4075 0.6761 33 1 4.9067 2.7944 1.0382 34 1 3.6376 2.3282 2.1850 35 1 3.9556 1.5376 -0.7217 36 1 3.7538 0.4958 0.7003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260723243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:15 Heat of formation + Delta-G solvation = 20.116993 kcal Electronic energy + Delta-G solvation = -15614.747870 eV Core-core repulsion = 13327.307282 eV Total energy + Delta-G solvation = -2287.440587 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.10260 -35.45476 -32.19698 -31.60731 -30.30227 -27.74151 -25.71571 -24.94574 -22.43112 -21.87466 -19.61006 -17.88060 -16.22674 -15.46581 -15.04492 -14.51507 -14.39645 -13.59974 -13.36094 -13.03382 -12.50706 -12.27365 -12.08835 -11.79608 -11.46513 -11.11865 -10.96956 -10.92146 -10.55790 -10.41167 -10.26908 -10.09406 -9.70366 -9.36522 -9.06062 -8.66649 -8.28781 -7.75335 -6.41894 -5.88202 -3.92326 3.36366 3.43837 3.47841 4.34768 4.52910 5.21335 5.38201 5.42239 5.46085 5.65957 5.72203 5.89668 5.98335 6.03640 6.19171 6.29364 6.32159 6.42085 6.47749 6.61027 6.72302 6.76057 7.00823 7.15346 7.20437 7.53382 7.64354 7.64864 7.75347 7.94638 8.20946 8.53201 8.97469 9.53479 9.70892 9.88615 11.16997 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053748 B = 0.009594 C = 0.009134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.824536 B = 2917.923101 C = 3064.864690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 N -0.517 5.517 4 C 0.061 3.939 5 C -0.129 4.129 6 C -0.121 4.121 7 C 0.250 3.750 8 N -0.851 5.851 9 C -0.494 4.494 10 H 0.052 0.948 11 C 0.066 3.934 12 N -0.893 5.893 13 Si 0.890 3.110 14 H -0.285 1.285 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.093 4.093 18 C 0.057 3.943 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.023 0.977 23 H 0.070 0.930 24 H 0.024 0.976 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.020 0.980 30 H 0.350 0.650 31 H 0.318 0.682 32 H 0.258 0.742 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 -9.594 -4.021 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 N -0.242 5.242 4 C -0.066 4.066 5 C -0.168 4.168 6 C -0.161 4.161 7 C 0.158 3.842 8 N -0.391 5.391 9 C -0.533 4.533 10 H 0.070 0.930 11 C -0.134 4.134 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.212 1.212 15 H -0.215 1.215 16 H -0.201 1.201 17 C -0.132 4.132 18 C -0.072 4.072 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.041 0.959 23 H 0.089 0.911 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.169 0.831 31 H 0.135 0.865 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.659 -9.262 -2.962 9.865 hybrid contribution 0.633 0.549 -1.402 1.634 sum -1.026 -8.713 -4.364 9.799 Atomic orbital electron populations 1.21825 0.95275 1.00759 1.02759 1.22143 0.95973 0.89638 0.99862 1.61584 1.15405 1.14294 1.32933 1.21119 0.99324 0.96837 0.89353 1.20780 1.02111 0.93317 1.00552 1.22074 0.92386 1.01779 0.99862 1.17864 0.87971 0.89959 0.88389 1.59345 1.05743 1.07990 1.66005 1.21333 1.06791 0.91353 1.33835 0.93003 1.24896 0.94835 0.98598 0.95099 1.69643 1.16323 1.21759 1.45691 0.86626 0.79850 0.82805 0.78859 1.21169 1.21456 1.20118 1.22046 0.98402 0.94596 0.98154 1.22047 0.87033 0.99065 0.99027 0.92793 0.92971 0.91509 0.95868 0.91124 0.95803 0.92525 0.93835 0.90488 0.89940 0.96155 0.83072 0.86506 0.93185 0.93394 0.92578 0.95180 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.92 37.16 0.37 -1.49 16 2 C 0.05 0.73 5.46 -3.82 -0.02 0.70 16 3 N -0.52 -8.94 2.39 -239.56 -0.57 -9.51 16 4 C 0.06 1.05 4.73 -6.71 -0.03 1.02 16 5 C -0.13 -2.62 5.23 -29.32 -0.15 -2.77 16 6 C -0.12 -2.85 4.60 -27.21 -0.13 -2.98 16 7 C 0.25 6.18 0.63 -133.35 -0.08 6.10 16 8 N -0.85 -21.23 8.01 -0.68 -0.01 -21.23 16 9 C -0.49 -13.70 8.04 -34.44 -0.28 -13.98 16 10 H 0.05 1.45 7.68 -52.49 -0.40 1.05 16 11 C 0.07 1.81 4.84 -17.82 -0.09 1.73 16 12 N -0.89 -24.71 9.70 55.43 0.54 -24.17 16 13 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C -0.09 -2.03 5.07 -25.50 -0.13 -2.16 16 18 C 0.06 1.03 5.17 -4.68 -0.02 1.01 16 19 H 0.05 0.68 6.33 -51.93 -0.33 0.35 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.02 0.30 8.10 -51.93 -0.42 -0.12 16 23 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 24 H 0.02 0.41 7.24 -51.93 -0.38 0.03 16 25 H 0.06 0.87 5.90 -51.93 -0.31 0.57 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.69 5.34 -51.93 -0.28 1.41 16 28 H 0.08 2.20 5.93 -51.93 -0.31 1.89 16 29 H 0.02 0.45 7.15 -51.93 -0.37 0.08 16 30 H 0.35 9.38 5.89 -39.29 -0.23 9.15 16 31 H 0.32 7.26 4.93 -39.29 -0.19 7.07 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 34 H 0.06 1.27 8.13 -51.92 -0.42 0.85 16 35 H 0.03 0.54 6.51 -51.93 -0.34 0.21 16 36 H 0.05 0.76 7.35 -51.93 -0.38 0.38 16 LS Contribution 259.58 15.07 3.91 3.91 Total: -1.00 -27.71 259.58 -7.29 -35.00 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.58 Total: 12.25 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.56 Total: -12.83 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.04 Total: -54.92 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.71 -7.29 -35.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.121 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds