Wall clock time and date at job start Mon Mar 30 2020 03:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47166 * 2 1 4 4 C 1.47636 * 110.99790 * 66.04651 * 3 2 1 5 5 C 1.50812 * 108.03763 * 150.32507 * 4 3 2 6 6 C 1.53817 * 111.61986 * 95.06211 * 5 4 3 7 7 C 1.54172 * 111.97278 * 319.04248 * 6 5 4 8 8 N 1.46898 * 108.85575 * 79.29175 * 7 6 5 9 9 C 1.50703 * 108.85566 * 197.67542 * 7 6 5 10 10 H 1.07999 * 119.99990 * 119.99418 * 9 7 6 11 11 C 1.37871 * 119.99936 * 300.00059 * 9 7 6 12 12 N 1.31521 * 120.00262 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00016 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46621 * 60.00375 * 13 11 9 15 15 H 1.48501 * 109.47148 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47183 * 300.00114 * 13 11 9 17 17 C 1.50752 * 112.60826 * 318.48013 * 7 6 5 18 18 C 1.39778 * 111.00266 * 297.14629 * 3 2 1 19 19 H 1.09003 * 109.47421 * 299.99546 * 1 2 3 20 20 H 1.09001 * 109.47617 * 59.99917 * 1 2 3 21 21 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46696 * 240.00302 * 2 1 3 23 23 H 1.08996 * 109.47010 * 120.00452 * 2 1 3 24 24 H 1.09003 * 109.74503 * 30.69513 * 4 3 2 25 25 H 1.09001 * 109.79188 * 269.98692 * 4 3 2 26 26 H 1.09001 * 109.05391 * 334.51407 * 5 4 3 27 27 H 1.09002 * 109.05275 * 215.61383 * 5 4 3 28 28 H 1.09004 * 108.97973 * 79.67821 * 6 5 4 29 29 H 1.09002 * 108.98408 * 198.39963 * 6 5 4 30 30 H 1.00901 * 111.00240 * 59.99934 * 8 7 6 31 31 H 1.00904 * 110.99832 * 183.95851 * 8 7 6 32 32 H 0.96998 * 120.00056 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.54730 * 333.14728 * 17 7 6 34 34 H 1.09008 * 109.54524 * 212.87224 * 17 7 6 35 35 H 1.08996 * 109.01800 * 309.72688 * 18 3 2 36 36 H 1.09000 * 109.02174 * 68.54615 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6684 2.0703 1.2596 5 6 2.7276 3.1070 1.5383 6 6 2.3151 4.4934 1.0152 7 6 1.6335 4.4099 -0.3651 8 7 0.2364 3.9953 -0.1803 9 6 1.6530 5.7759 -1.0014 10 1 2.1537 5.9241 -1.9468 11 6 1.0318 6.8363 -0.3766 12 7 0.4217 6.6558 0.7744 13 14 1.0566 8.5296 -1.1650 14 1 0.4030 8.4651 -2.4969 15 1 0.3235 9.4890 -0.3005 16 1 2.4623 8.9808 -1.3247 17 6 2.3138 3.4322 -1.2892 18 6 1.6253 2.0558 -1.1612 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 1.6365 1.3479 2.0753 25 1 0.6970 2.5542 1.1580 26 1 3.6564 2.8059 1.0537 27 1 2.8924 3.1672 2.6141 28 1 1.6242 4.9489 1.7247 29 1 3.2030 5.1206 0.9348 30 1 -0.2642 4.6567 0.3941 31 1 -0.2235 3.8676 -1.0694 32 1 -0.0156 7.4018 1.2138 33 1 3.3646 3.3413 -1.0143 34 1 2.2336 3.7858 -2.3172 35 1 1.8835 1.4473 -2.0279 36 1 0.5451 2.1995 -1.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260723244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:17 Heat of formation + Delta-G solvation = 10.221514 kcal Electronic energy + Delta-G solvation = -15633.932129 eV Core-core repulsion = 13346.062441 eV Total energy + Delta-G solvation = -2287.869688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.99104 -35.51821 -32.20939 -31.39999 -29.78282 -27.98067 -25.78052 -24.66256 -22.94520 -21.70829 -18.94470 -17.87536 -16.47272 -15.39271 -14.96959 -14.66720 -14.11908 -13.55281 -13.28303 -12.99535 -12.81707 -12.05225 -11.71326 -11.60071 -11.29744 -11.17626 -11.00784 -10.64155 -10.54359 -10.42441 -10.09494 -10.05364 -9.70311 -9.30235 -9.22432 -8.99291 -8.47479 -7.52480 -6.74447 -5.95139 -4.15320 3.25734 3.31265 3.34428 4.36965 4.78631 5.18892 5.44122 5.58854 5.79006 5.92150 6.02918 6.15786 6.21995 6.31078 6.35983 6.40075 6.49684 6.61528 6.62006 6.80121 6.91454 6.94367 7.18932 7.20786 7.36061 7.48732 7.74555 7.88619 8.00318 8.04802 8.29058 8.34556 8.78455 9.06407 9.24590 9.57220 10.95274 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051905 B = 0.009574 C = 0.009309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.313058 B = 2923.957609 C = 3007.071487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 N -0.548 5.548 4 C 0.055 3.945 5 C -0.114 4.114 6 C -0.087 4.087 7 C 0.235 3.765 8 N -0.841 5.841 9 C -0.542 4.542 10 H 0.051 0.949 11 C 0.068 3.932 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.098 4.098 18 C 0.076 3.924 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.038 0.962 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.351 0.649 31 H 0.305 0.695 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.036 0.964 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -8.411 -0.250 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.070 4.070 3 N -0.272 5.272 4 C -0.071 4.071 5 C -0.152 4.152 6 C -0.125 4.125 7 C 0.144 3.856 8 N -0.373 5.373 9 C -0.582 4.582 10 H 0.069 0.931 11 C -0.134 4.134 12 N -0.530 5.530 13 Si 0.718 3.282 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.136 4.136 18 C -0.053 4.053 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.169 0.831 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.826 -8.914 0.249 8.955 hybrid contribution -0.954 2.038 -0.914 2.429 sum -0.128 -6.876 -0.665 6.909 Atomic orbital electron populations 1.22381 0.98674 1.00725 1.02649 1.22061 0.92658 0.91218 1.01068 1.59150 1.62790 1.01725 1.03487 1.22073 1.01730 0.94938 0.88380 1.21443 0.98597 0.97013 0.98143 1.21805 0.99226 0.92749 0.98758 1.18066 0.86484 0.90163 0.90926 1.59864 1.05450 1.53569 1.18414 1.22085 1.34594 0.95080 1.06434 0.93122 1.24987 0.95138 0.98664 0.94603 1.69671 1.36071 1.31655 1.15641 0.86702 0.78126 0.84217 0.79153 1.20521 1.21362 1.20384 1.21574 0.99222 0.93671 0.99162 1.20859 0.99679 0.94475 0.90325 0.92376 0.92388 0.93550 0.92121 0.91957 0.94314 0.88509 0.93003 0.94552 0.90596 0.94615 0.83104 0.88492 0.92754 0.92955 0.93244 0.94594 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 9.37 37.16 0.35 -2.26 16 2 C 0.06 0.87 5.87 -3.83 -0.02 0.84 16 3 N -0.55 -9.80 4.12 -240.00 -0.99 -10.79 16 4 C 0.06 1.04 4.30 -4.52 -0.02 1.02 16 5 C -0.11 -2.31 5.41 -27.40 -0.15 -2.45 16 6 C -0.09 -2.04 4.45 -25.69 -0.11 -2.16 16 7 C 0.23 5.51 0.51 -133.27 -0.07 5.44 16 8 N -0.84 -18.81 4.71 -0.61 0.00 -18.81 16 9 C -0.54 -14.30 7.91 -34.44 -0.27 -14.57 16 10 H 0.05 1.36 7.47 -52.49 -0.39 0.97 16 11 C 0.07 1.79 5.18 -17.82 -0.09 1.69 16 12 N -0.89 -23.68 9.59 55.43 0.53 -23.15 16 13 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.10 -2.09 5.00 -27.10 -0.14 -2.23 16 18 C 0.08 1.43 4.36 -6.74 -0.03 1.40 16 19 H 0.06 0.88 7.31 -51.93 -0.38 0.50 16 20 H 0.06 0.86 6.66 -51.93 -0.35 0.52 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.85 7.99 -51.93 -0.41 0.43 16 23 H 0.06 0.87 7.91 -51.93 -0.41 0.46 16 24 H 0.04 0.67 7.67 -51.93 -0.40 0.27 16 25 H 0.10 2.01 5.15 -51.93 -0.27 1.74 16 26 H 0.05 1.06 7.26 -51.93 -0.38 0.68 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.95 6.54 -51.93 -0.34 1.61 16 29 H 0.04 0.88 7.98 -51.93 -0.41 0.47 16 30 H 0.35 8.63 6.58 -39.29 -0.26 8.37 16 31 H 0.31 6.70 7.92 -39.29 -0.31 6.39 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.05 1.14 7.11 -51.93 -0.37 0.77 16 34 H 0.05 1.06 7.52 -51.92 -0.39 0.67 16 35 H 0.04 0.63 7.89 -51.93 -0.41 0.22 16 36 H 0.05 0.94 4.20 -51.93 -0.22 0.73 16 LS Contribution 259.37 15.07 3.91 3.91 Total: -1.00 -25.46 259.37 -7.80 -33.26 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.68 Total: 12.96 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.55 Total: -13.26 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.46 Total: -52.75 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -25.46 -7.80 -33.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.484 kcal (2) G-P(sol) polarization free energy of solvation -25.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds