Wall clock time and date at job start Mon Mar 30 2020 03:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47166 * 2 1 4 4 C 1.47636 * 110.99790 * 66.04651 * 3 2 1 5 5 C 1.50812 * 108.03763 * 150.32507 * 4 3 2 6 6 C 1.53817 * 111.61986 * 95.06211 * 5 4 3 7 7 C 1.54172 * 111.97278 * 319.04248 * 6 5 4 8 8 N 1.46898 * 108.85575 * 79.29175 * 7 6 5 9 9 C 1.50703 * 108.85566 * 197.67542 * 7 6 5 10 10 H 1.07999 * 119.99990 * 119.99418 * 9 7 6 11 11 C 1.37871 * 119.99936 * 300.00059 * 9 7 6 12 12 N 1.31521 * 120.00262 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00016 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46621 * 60.00375 * 13 11 9 15 15 H 1.48501 * 109.47148 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47183 * 300.00114 * 13 11 9 17 17 C 1.50752 * 112.60826 * 318.48013 * 7 6 5 18 18 C 1.39778 * 111.00266 * 297.14629 * 3 2 1 19 19 H 1.09003 * 109.47421 * 299.99546 * 1 2 3 20 20 H 1.09001 * 109.47617 * 59.99917 * 1 2 3 21 21 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46696 * 240.00302 * 2 1 3 23 23 H 1.08996 * 109.47010 * 120.00452 * 2 1 3 24 24 H 1.09003 * 109.74503 * 30.69513 * 4 3 2 25 25 H 1.09001 * 109.79188 * 269.98692 * 4 3 2 26 26 H 1.09001 * 109.05391 * 334.51407 * 5 4 3 27 27 H 1.09002 * 109.05275 * 215.61383 * 5 4 3 28 28 H 1.09004 * 108.97973 * 79.67821 * 6 5 4 29 29 H 1.09002 * 108.98408 * 198.39963 * 6 5 4 30 30 H 1.00901 * 111.00240 * 59.99934 * 8 7 6 31 31 H 1.00904 * 110.99832 * 183.95851 * 8 7 6 32 32 H 0.96998 * 120.00056 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.54730 * 333.14728 * 17 7 6 34 34 H 1.09008 * 109.54524 * 212.87224 * 17 7 6 35 35 H 1.08996 * 109.01800 * 309.72688 * 18 3 2 36 36 H 1.09000 * 109.02174 * 68.54615 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6684 2.0703 1.2596 5 6 2.7276 3.1070 1.5383 6 6 2.3151 4.4934 1.0152 7 6 1.6335 4.4099 -0.3651 8 7 0.2364 3.9953 -0.1803 9 6 1.6530 5.7759 -1.0014 10 1 2.1537 5.9241 -1.9468 11 6 1.0318 6.8363 -0.3766 12 7 0.4217 6.6558 0.7744 13 14 1.0566 8.5296 -1.1650 14 1 0.4030 8.4651 -2.4969 15 1 0.3235 9.4890 -0.3005 16 1 2.4623 8.9808 -1.3247 17 6 2.3138 3.4322 -1.2892 18 6 1.6253 2.0558 -1.1612 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 1.6365 1.3479 2.0753 25 1 0.6970 2.5542 1.1580 26 1 3.6564 2.8059 1.0537 27 1 2.8924 3.1672 2.6141 28 1 1.6242 4.9489 1.7247 29 1 3.2030 5.1206 0.9348 30 1 -0.2642 4.6567 0.3941 31 1 -0.2235 3.8676 -1.0694 32 1 -0.0156 7.4018 1.2138 33 1 3.3646 3.3413 -1.0143 34 1 2.2336 3.7858 -2.3172 35 1 1.8835 1.4473 -2.0279 36 1 0.5451 2.1995 -1.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260723244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:17 Heat of formation + Delta-G solvation = -5.780246 kcal Electronic energy + Delta-G solvation = -15634.626017 eV Core-core repulsion = 13346.062441 eV Total energy + Delta-G solvation = -2288.563576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56703 -37.17882 -34.02257 -33.13518 -31.25262 -29.66778 -27.60910 -26.31204 -24.58059 -23.16737 -20.45751 -19.71560 -18.38066 -17.10132 -16.65018 -16.23903 -15.71641 -15.25578 -14.83608 -14.54537 -14.39193 -13.66162 -13.37790 -13.05544 -13.03620 -12.85114 -12.61552 -12.40346 -12.26697 -12.03519 -11.84678 -11.53339 -11.39887 -11.08179 -10.97551 -10.78873 -10.45429 -9.15256 -8.46644 -7.91450 -6.23343 1.36734 1.39284 1.45230 2.40254 3.13483 3.39852 4.21621 4.31299 4.45809 4.49595 4.55087 4.66733 4.70239 4.76769 4.84483 4.90668 5.06776 5.12457 5.20103 5.22461 5.28189 5.42046 5.48053 5.53374 5.65113 5.72129 5.76549 6.00413 6.12756 6.31223 6.62068 6.79017 6.87249 7.15067 7.27625 7.54387 8.90130 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051905 B = 0.009574 C = 0.009309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.313058 B = 2923.957609 C = 3007.071487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.057 3.943 3 N -0.555 5.555 4 C 0.061 3.939 5 C -0.106 4.106 6 C -0.079 4.079 7 C 0.232 3.768 8 N -0.824 5.824 9 C -0.564 4.564 10 H 0.037 0.963 11 C 0.030 3.970 12 N -0.902 5.902 13 Si 0.943 3.057 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.281 1.281 17 C -0.095 4.095 18 C 0.087 3.913 19 H 0.044 0.956 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.010 0.990 30 H 0.339 0.661 31 H 0.307 0.693 32 H 0.262 0.738 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 -9.773 -0.386 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.070 4.070 3 N -0.279 5.279 4 C -0.066 4.066 5 C -0.144 4.144 6 C -0.118 4.118 7 C 0.140 3.860 8 N -0.353 5.353 9 C -0.604 4.604 10 H 0.056 0.944 11 C -0.170 4.170 12 N -0.541 5.541 13 Si 0.770 3.230 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.207 1.207 17 C -0.133 4.133 18 C -0.043 4.043 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.089 0.911 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.155 0.845 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.707 -10.296 0.105 10.321 hybrid contribution -0.897 2.459 -0.868 2.757 sum -0.190 -7.838 -0.763 7.877 Atomic orbital electron populations 1.22300 0.98038 1.01952 1.01456 1.22167 0.93132 0.89212 1.02506 1.59103 1.63178 1.03022 1.02570 1.21928 0.99953 0.94995 0.89704 1.21361 0.98968 0.95364 0.98730 1.21666 0.97404 0.94338 0.98398 1.18094 0.87201 0.89603 0.91056 1.59883 1.04731 1.52565 1.18161 1.22394 1.34765 0.96942 1.06277 0.94421 1.25543 0.95037 1.01318 0.95109 1.69776 1.36105 1.32164 1.16105 0.85869 0.77743 0.80957 0.78441 1.20301 1.20968 1.20698 1.21487 0.98756 0.95021 0.98065 1.20703 0.98858 0.93210 0.91508 0.93640 0.93467 0.91133 0.90714 0.90555 0.92227 0.90314 0.93079 0.93310 0.93086 0.97118 0.84479 0.88281 0.92864 0.93763 0.93961 0.92902 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.51 9.37 71.98 0.67 -3.84 16 2 C 0.06 1.51 5.87 86.30 0.51 2.01 16 3 N -0.56 -18.54 4.12 -913.23 -3.76 -22.30 16 4 C 0.06 2.19 4.30 85.45 0.37 2.56 16 5 C -0.11 -4.19 5.41 30.16 0.16 -4.03 16 6 C -0.08 -3.78 4.45 31.27 0.14 -3.64 16 7 C 0.23 10.96 0.51 2.45 0.00 10.96 16 8 N -0.82 -36.79 4.71 -155.85 -0.73 -37.52 16 9 C -0.56 -30.12 7.91 25.60 0.20 -29.92 16 10 H 0.04 2.06 7.47 -2.91 -0.02 2.04 16 11 C 0.03 1.60 5.18 84.65 0.44 2.04 16 12 N -0.90 -48.35 9.59 21.45 0.21 -48.14 16 13 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 C -0.09 -4.01 5.00 30.35 0.15 -3.86 16 18 C 0.09 3.12 4.36 88.07 0.38 3.50 16 19 H 0.04 1.26 7.31 -2.39 -0.02 1.24 16 20 H 0.05 1.29 6.66 -2.39 -0.02 1.27 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.07 1.79 7.99 -2.38 -0.02 1.77 16 23 H 0.08 1.83 7.91 -2.39 -0.02 1.81 16 24 H 0.06 1.90 7.67 -2.39 -0.02 1.88 16 25 H 0.08 3.17 5.15 -2.39 -0.01 3.16 16 26 H 0.05 2.02 7.26 -2.39 -0.02 2.00 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 2.66 6.54 -2.39 -0.02 2.65 16 29 H 0.01 0.52 7.98 -2.39 -0.02 0.50 16 30 H 0.34 16.79 6.58 -89.69 -0.59 16.20 16 31 H 0.31 13.41 7.92 -89.69 -0.71 12.70 16 32 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 33 H 0.04 1.91 7.11 -2.39 -0.02 1.90 16 34 H 0.04 1.81 7.52 -2.38 -0.02 1.80 16 35 H 0.05 1.73 7.89 -2.39 -0.02 1.71 16 36 H 0.04 1.62 4.20 -2.39 -0.01 1.61 16 Total: -1.00 -53.39 259.37 0.54 -52.85 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.23 Total: 34.22 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 3.03 Total: -24.21 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.29 Total: -107.96 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -53.39 0.54 -52.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.067 kcal (2) G-P(sol) polarization free energy of solvation -53.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds