Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47223 * 2 1 4 4 C 1.46853 * 110.99875 * 189.99750 * 3 2 1 5 5 C 1.53037 * 109.52126 * 174.15657 * 4 3 2 6 6 C 1.53124 * 109.27463 * 59.18626 * 5 4 3 7 7 C 1.50700 * 109.52575 * 62.24958 * 6 5 4 8 8 H 1.08001 * 119.99598 * 243.17441 * 7 6 5 9 9 C 1.37867 * 120.00066 * 63.16210 * 7 6 5 10 10 N 1.31519 * 120.00358 * 354.23501 * 9 7 6 11 11 Si 1.86805 * 120.00061 * 174.22868 * 9 7 6 12 12 H 1.48499 * 109.47237 * 270.00694 * 11 9 7 13 13 H 1.48503 * 109.46857 * 30.00195 * 11 9 7 14 14 H 1.48501 * 109.47195 * 150.00130 * 11 9 7 15 15 C 1.53004 * 109.52009 * 182.37313 * 6 5 4 16 16 N 1.46896 * 109.47051 * 183.28260 * 15 6 5 17 17 C 1.53117 * 109.15885 * 302.34086 * 6 5 4 18 18 C 1.46841 * 111.00126 * 65.79417 * 3 2 1 19 19 H 1.09001 * 109.46759 * 59.99693 * 1 2 3 20 20 H 1.08994 * 109.47192 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46549 * 300.00290 * 1 2 3 22 22 H 1.08997 * 109.47355 * 239.99773 * 2 1 3 23 23 H 1.08998 * 109.47154 * 120.00002 * 2 1 3 24 24 H 1.09007 * 109.45898 * 54.14553 * 4 3 2 25 25 H 1.08993 * 109.46833 * 294.17848 * 4 3 2 26 26 H 1.08994 * 109.50837 * 299.24160 * 5 4 3 27 27 H 1.08999 * 109.50049 * 179.12332 * 5 4 3 28 28 H 0.97002 * 119.99951 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47176 * 303.28425 * 15 6 5 30 30 H 1.08999 * 109.47065 * 63.28706 * 15 6 5 31 31 H 1.00900 * 110.99658 * 61.93036 * 16 15 6 32 32 H 1.00899 * 111.00336 * 185.88590 * 16 15 6 33 33 H 1.08999 * 109.50153 * 177.59927 * 17 6 5 34 34 H 1.09002 * 109.50294 * 297.71381 * 17 6 5 35 35 H 1.09002 * 109.46192 * 305.84992 * 18 3 2 36 36 H 1.09000 * 109.47002 * 65.82104 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 -0.2380 5 6 3.9175 2.8874 -0.3763 6 6 3.5677 3.6482 0.9057 7 6 4.3147 3.0467 2.0682 8 1 3.7704 2.5899 2.8815 9 6 5.6927 3.0794 2.0932 10 7 6.3588 3.5321 1.0535 11 14 6.6139 2.4808 3.6041 12 1 6.8175 3.6146 4.5412 13 1 5.8240 1.4184 4.2768 14 1 7.9325 1.9335 3.1953 15 6 3.9611 5.1187 0.7510 16 7 3.6977 5.8309 2.0085 17 6 2.0608 3.5439 1.1567 18 6 1.6652 2.0685 1.2503 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.7028 0.8899 -1.1547 25 1 3.9888 0.9682 0.6002 26 1 3.4075 3.3469 -1.2228 27 1 4.9950 2.9219 -0.5374 28 1 7.3284 3.5554 1.0713 29 1 5.0218 5.1876 0.5097 30 1 3.3760 5.5689 -0.0509 31 1 4.2524 5.4523 2.7615 32 1 3.8585 6.8215 1.9036 33 1 1.8117 4.0475 2.0907 34 1 1.5215 4.0138 0.3342 35 1 0.5904 1.9906 1.4148 36 1 2.1943 1.6027 2.0817 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260934548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = -6.864757 kcal Electronic energy + Delta-G solvation = -15481.521632 eV Core-core repulsion = 13192.911028 eV Total energy + Delta-G solvation = -2288.610604 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.45908 -35.32058 -31.84326 -31.74299 -29.69203 -28.76579 -25.26036 -24.23063 -22.32371 -21.10453 -19.90715 -18.51921 -15.65735 -15.27368 -14.66425 -14.45470 -14.21640 -13.63740 -13.29585 -13.04422 -12.73995 -12.24997 -11.99850 -11.44680 -11.25113 -11.07539 -10.89999 -10.82976 -10.64117 -10.49296 -10.35782 -10.09253 -9.74738 -9.07232 -8.83774 -8.63938 -8.32636 -7.43095 -7.30361 -5.95189 -4.02151 3.25695 3.34281 3.37523 4.40534 4.75208 5.26798 5.44073 5.66865 5.80960 5.93957 5.98764 6.18164 6.22097 6.32399 6.37646 6.48528 6.52738 6.64841 6.82089 6.83639 6.94850 7.12561 7.23734 7.29490 7.43521 7.59960 7.66433 7.75994 7.98577 8.07661 8.23688 8.47834 8.59521 8.69902 9.00119 9.59062 11.03086 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.012111 C = 0.010389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.097670 B = 2311.424813 C = 2694.389726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.540 5.540 4 C 0.073 3.927 5 C -0.101 4.101 6 C 0.075 3.925 7 C -0.484 4.484 8 H 0.052 0.948 9 C 0.060 3.940 10 N -0.888 5.888 11 Si 0.881 3.119 12 H -0.282 1.282 13 H -0.277 1.277 14 H -0.290 1.290 15 C 0.074 3.926 16 N -0.846 5.846 17 C -0.089 4.089 18 C 0.063 3.937 19 H 0.058 0.942 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.024 0.976 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.023 0.977 27 H 0.093 0.907 28 H 0.257 0.743 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.343 0.657 32 H 0.309 0.691 33 H 0.060 0.940 34 H 0.036 0.964 35 H 0.049 0.951 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -2.592 -1.219 6.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 N -0.266 5.266 4 C -0.054 4.054 5 C -0.140 4.140 6 C 0.075 3.925 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.140 4.140 10 N -0.528 5.528 11 Si 0.710 3.290 12 H -0.209 1.209 13 H -0.202 1.202 14 H -0.216 1.216 15 C -0.057 4.057 16 N -0.373 5.373 17 C -0.127 4.127 18 C -0.064 4.064 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.157 0.843 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.313 -2.605 -1.745 7.048 hybrid contribution 2.049 -0.573 1.451 2.575 sum -4.264 -3.178 -0.294 5.326 Atomic orbital electron populations 1.21787 0.95847 1.00451 1.02236 1.21988 0.95304 0.90851 0.99774 1.62091 1.15604 1.13264 1.35604 1.21938 0.85664 0.99263 0.98522 1.21588 1.02494 0.92729 0.97143 1.18125 0.90072 0.91031 0.93319 1.21091 0.90589 1.36015 1.04574 0.92935 1.24924 0.97687 0.95782 0.95607 1.69823 1.06987 1.47766 1.28212 0.86764 0.79338 0.79032 0.83871 1.20861 1.20225 1.21569 1.21746 0.99745 0.95397 0.88823 1.58815 1.64923 1.04863 1.08734 1.21471 0.98390 0.92858 0.99975 1.22060 0.97830 0.96537 0.89977 0.92264 0.93243 0.92775 0.91835 0.95785 0.93839 0.94176 0.95859 0.88837 0.93258 0.92623 0.95915 0.84307 0.88257 0.92117 0.94516 0.93231 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.84 37.16 0.37 -1.67 16 2 C 0.05 0.82 5.68 -3.82 -0.02 0.80 16 3 N -0.54 -10.66 4.66 -234.67 -1.09 -11.75 16 4 C 0.07 1.58 5.25 -3.83 -0.02 1.56 16 5 C -0.10 -2.35 4.72 -26.65 -0.13 -2.48 16 6 C 0.08 1.76 0.33 -155.53 -0.05 1.71 16 7 C -0.48 -12.20 5.04 -34.44 -0.17 -12.37 16 8 H 0.05 1.38 6.77 -52.49 -0.36 1.03 16 9 C 0.06 1.53 5.10 -17.82 -0.09 1.44 16 10 N -0.89 -23.31 9.42 55.43 0.52 -22.79 16 11 Si 0.88 20.49 29.54 -169.99 -5.02 15.47 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.07 1.70 5.44 -3.82 -0.02 1.68 16 16 N -0.85 -17.87 8.96 -10.37 -0.09 -17.96 16 17 C -0.09 -1.94 4.69 -26.65 -0.12 -2.06 16 18 C 0.06 1.29 5.08 -3.84 -0.02 1.27 16 19 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.77 6.43 -51.93 -0.33 0.43 16 22 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 23 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 24 H 0.04 0.87 8.02 -51.92 -0.42 0.45 16 25 H 0.04 0.95 7.31 -51.93 -0.38 0.57 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.06 1.41 6.17 -51.93 -0.32 1.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.34 7.69 7.93 -39.29 -0.31 7.38 16 32 H 0.31 5.73 9.08 -39.29 -0.36 5.38 16 33 H 0.06 1.35 7.79 -51.93 -0.40 0.95 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.91 6.21 -51.93 -0.32 0.58 16 36 H 0.03 0.77 6.72 -51.93 -0.35 0.42 16 LS Contribution 268.69 15.07 4.05 4.05 Total: -1.00 -25.61 268.69 -7.87 -33.48 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.95 Total: 9.62 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.28 Total: -10.12 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.66 Total: -52.50 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -25.61 -7.87 -33.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260934548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.617 kcal (2) G-P(sol) polarization free energy of solvation -25.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds