Wall clock time and date at job start Mon Mar 30 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47223 * 2 1 4 4 C 1.46853 * 110.99875 * 189.99750 * 3 2 1 5 5 C 1.53037 * 109.52126 * 174.15657 * 4 3 2 6 6 C 1.53124 * 109.27463 * 59.18626 * 5 4 3 7 7 C 1.50700 * 109.52575 * 62.24958 * 6 5 4 8 8 H 1.08001 * 119.99598 * 243.17441 * 7 6 5 9 9 C 1.37867 * 120.00066 * 63.16210 * 7 6 5 10 10 N 1.31519 * 120.00358 * 354.23501 * 9 7 6 11 11 Si 1.86805 * 120.00061 * 174.22868 * 9 7 6 12 12 H 1.48499 * 109.47237 * 270.00694 * 11 9 7 13 13 H 1.48503 * 109.46857 * 30.00195 * 11 9 7 14 14 H 1.48501 * 109.47195 * 150.00130 * 11 9 7 15 15 C 1.53004 * 109.52009 * 182.37313 * 6 5 4 16 16 N 1.46896 * 109.47051 * 183.28260 * 15 6 5 17 17 C 1.53117 * 109.15885 * 302.34086 * 6 5 4 18 18 C 1.46841 * 111.00126 * 65.79417 * 3 2 1 19 19 H 1.09001 * 109.46759 * 59.99693 * 1 2 3 20 20 H 1.08994 * 109.47192 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46549 * 300.00290 * 1 2 3 22 22 H 1.08997 * 109.47355 * 239.99773 * 2 1 3 23 23 H 1.08998 * 109.47154 * 120.00002 * 2 1 3 24 24 H 1.09007 * 109.45898 * 54.14553 * 4 3 2 25 25 H 1.08993 * 109.46833 * 294.17848 * 4 3 2 26 26 H 1.08994 * 109.50837 * 299.24160 * 5 4 3 27 27 H 1.08999 * 109.50049 * 179.12332 * 5 4 3 28 28 H 0.97002 * 119.99951 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47176 * 303.28425 * 15 6 5 30 30 H 1.08999 * 109.47065 * 63.28706 * 15 6 5 31 31 H 1.00900 * 110.99658 * 61.93036 * 16 15 6 32 32 H 1.00899 * 111.00336 * 185.88590 * 16 15 6 33 33 H 1.08999 * 109.50153 * 177.59927 * 17 6 5 34 34 H 1.09002 * 109.50294 * 297.71381 * 17 6 5 35 35 H 1.09002 * 109.46192 * 305.84992 * 18 3 2 36 36 H 1.09000 * 109.47002 * 65.82104 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 -0.2380 5 6 3.9175 2.8874 -0.3763 6 6 3.5677 3.6482 0.9057 7 6 4.3147 3.0467 2.0682 8 1 3.7704 2.5899 2.8815 9 6 5.6927 3.0794 2.0932 10 7 6.3588 3.5321 1.0535 11 14 6.6139 2.4808 3.6041 12 1 6.8175 3.6146 4.5412 13 1 5.8240 1.4184 4.2768 14 1 7.9325 1.9335 3.1953 15 6 3.9611 5.1187 0.7510 16 7 3.6977 5.8309 2.0085 17 6 2.0608 3.5439 1.1567 18 6 1.6652 2.0685 1.2503 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.7028 0.8899 -1.1547 25 1 3.9888 0.9682 0.6002 26 1 3.4075 3.3469 -1.2228 27 1 4.9950 2.9219 -0.5374 28 1 7.3284 3.5554 1.0713 29 1 5.0218 5.1876 0.5097 30 1 3.3760 5.5689 -0.0509 31 1 4.2524 5.4523 2.7615 32 1 3.8585 6.8215 1.9036 33 1 1.8117 4.0475 2.0907 34 1 1.5215 4.0138 0.3342 35 1 0.5904 1.9906 1.4148 36 1 2.1943 1.6027 2.0817 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260934548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:11 Heat of formation + Delta-G solvation = -24.083153 kcal Electronic energy + Delta-G solvation = -15482.268278 eV Core-core repulsion = 13192.911028 eV Total energy + Delta-G solvation = -2289.357249 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16917 -36.99425 -33.75886 -33.34976 -31.41099 -30.30758 -27.16275 -25.94896 -23.97133 -22.68577 -21.55616 -20.39354 -17.48124 -17.05565 -16.48612 -16.08812 -15.77107 -15.23428 -15.08068 -14.83786 -14.35604 -13.80695 -13.60402 -13.11582 -12.91335 -12.84000 -12.58709 -12.49328 -12.30381 -12.24195 -11.97582 -11.75553 -11.56672 -10.88097 -10.64890 -10.51839 -10.27049 -9.12719 -9.02253 -7.92270 -6.03521 1.38713 1.44103 1.49518 2.46932 3.22948 3.27368 4.15167 4.21477 4.33488 4.39084 4.54390 4.63490 4.70014 4.76911 4.86496 4.97477 5.01615 5.04780 5.11605 5.24097 5.30882 5.38460 5.46886 5.50378 5.57606 5.71881 5.75977 5.92861 6.15083 6.45860 6.48525 6.57235 6.73881 6.90187 7.11883 7.58806 9.03384 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.012111 C = 0.010389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.097670 B = 2311.424813 C = 2694.389726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.045 3.955 3 N -0.542 5.542 4 C 0.082 3.918 5 C -0.097 4.097 6 C 0.069 3.931 7 C -0.482 4.482 8 H 0.038 0.962 9 C 0.027 3.973 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.278 1.278 13 H -0.281 1.281 14 H -0.293 1.293 15 C 0.080 3.920 16 N -0.839 5.839 17 C -0.083 4.083 18 C 0.070 3.930 19 H 0.060 0.940 20 H 0.075 0.925 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.018 0.982 24 H 0.058 0.942 25 H 0.013 0.987 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.254 0.746 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.337 0.663 32 H 0.325 0.675 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 -3.109 -1.211 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 N -0.267 5.267 4 C -0.046 4.046 5 C -0.136 4.136 6 C 0.068 3.932 7 C -0.521 4.521 8 H 0.057 0.943 9 C -0.171 4.171 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.206 1.206 14 H -0.220 1.220 15 C -0.051 4.051 16 N -0.367 5.367 17 C -0.120 4.120 18 C -0.058 4.058 19 H 0.079 0.921 20 H 0.094 0.906 21 H 0.070 0.930 22 H 0.093 0.907 23 H 0.037 0.963 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.540 -3.113 -1.734 8.340 hybrid contribution 2.407 -0.413 1.428 2.829 sum -5.133 -3.527 -0.306 6.235 Atomic orbital electron populations 1.21736 0.93461 1.02220 1.02136 1.22144 0.97228 0.88815 1.00096 1.62104 1.14043 1.15465 1.35099 1.21766 0.86830 0.97896 0.98126 1.21472 1.00886 0.94064 0.97132 1.18182 0.91114 0.91099 0.92778 1.21110 0.90704 1.35700 1.04591 0.94328 1.25364 0.98315 0.96186 0.97251 1.69945 1.06789 1.48463 1.29136 0.86017 0.78046 0.78487 0.81716 1.20405 1.20619 1.21963 1.21600 0.98186 0.95618 0.89682 1.58757 1.64448 1.05883 1.07606 1.21364 0.97060 0.94041 0.99581 1.21976 0.98976 0.95321 0.89527 0.92093 0.90633 0.93045 0.90668 0.96320 0.92369 0.96849 0.95671 0.91402 0.93610 0.95121 0.95419 0.85041 0.86467 0.92752 0.94333 0.90768 0.96787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.84 71.98 0.71 -2.69 16 2 C 0.05 1.39 5.68 86.30 0.49 1.88 16 3 N -0.54 -20.49 4.66 -896.37 -4.17 -24.66 16 4 C 0.08 3.47 5.25 86.32 0.45 3.92 16 5 C -0.10 -4.50 4.72 30.65 0.14 -4.35 16 6 C 0.07 3.22 0.33 -52.85 -0.02 3.20 16 7 C -0.48 -24.37 5.04 25.60 0.13 -24.24 16 8 H 0.04 2.04 6.77 -2.91 -0.02 2.02 16 9 C 0.03 1.39 5.10 84.65 0.43 1.83 16 10 N -0.90 -47.85 9.42 21.44 0.20 -47.65 16 11 Si 0.93 42.16 29.54 68.60 2.03 44.18 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 15 C 0.08 3.68 5.44 86.31 0.47 4.15 16 16 N -0.84 -34.75 8.96 -186.72 -1.67 -36.42 16 17 C -0.08 -3.51 4.69 30.65 0.14 -3.36 16 18 C 0.07 2.72 5.08 86.33 0.44 3.16 16 19 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 20 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.05 1.29 6.43 -2.38 -0.02 1.27 16 22 H 0.07 2.14 7.99 -2.39 -0.02 2.12 16 23 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 24 H 0.06 2.26 8.02 -2.38 -0.02 2.25 16 25 H 0.01 0.63 7.31 -2.39 -0.02 0.61 16 26 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 3.52 6.07 -2.39 -0.01 3.50 16 28 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 29 H 0.03 1.57 6.17 -2.39 -0.01 1.55 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.34 14.91 7.93 -89.69 -0.71 14.19 16 32 H 0.32 11.66 9.08 -89.69 -0.81 10.85 16 33 H 0.05 2.35 7.79 -2.39 -0.02 2.34 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 2.54 6.21 -2.39 -0.01 2.52 16 36 H 0.01 0.61 6.72 -2.39 -0.02 0.59 16 Total: -1.00 -53.21 268.69 -0.69 -53.90 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.46 Total: 27.16 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 3.39 Total: -16.51 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -5.65 Total: -108.73 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -53.21 -0.69 -53.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260934548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.819 kcal (2) G-P(sol) polarization free energy of solvation -53.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds