Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.50506 * 2 1 4 4 C 1.53039 * 109.50283 * 239.92512 * 2 1 3 5 5 N 1.46849 * 109.52082 * 299.23688 * 4 2 1 6 6 C 1.46898 * 110.99627 * 174.16036 * 5 4 2 7 7 C 1.46843 * 111.19609 * 298.25819 * 5 4 2 8 8 C 1.53034 * 109.52575 * 61.74333 * 7 5 4 9 9 C 1.53121 * 109.30992 * 300.79846 * 8 7 5 10 10 C 1.50697 * 109.52454 * 297.76762 * 9 8 7 11 11 H 1.07999 * 119.99902 * 357.06124 * 10 9 8 12 12 C 1.37880 * 120.00152 * 177.05601 * 10 9 8 13 13 N 1.31516 * 119.99666 * 6.55649 * 12 10 9 14 14 Si 1.86793 * 120.00135 * 186.55844 * 12 10 9 15 15 H 1.48501 * 109.47115 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47419 * 120.00105 * 14 12 10 17 17 H 1.48500 * 109.46885 * 240.00022 * 14 12 10 18 18 C 1.53002 * 109.52385 * 177.57654 * 9 8 7 19 19 N 1.46900 * 109.46945 * 65.56957 * 18 9 8 20 20 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46714 * 300.07530 * 1 2 3 22 22 H 1.09002 * 109.47319 * 60.07483 * 1 2 3 23 23 H 1.08993 * 109.46197 * 179.21767 * 4 2 1 24 24 H 1.09002 * 109.46010 * 59.24987 * 4 2 1 25 25 H 1.09007 * 109.46555 * 188.16477 * 6 5 4 26 26 H 1.08994 * 109.47230 * 308.15808 * 6 5 4 27 27 H 1.08999 * 109.47279 * 68.17049 * 6 5 4 28 28 H 1.08998 * 109.46145 * 301.72546 * 7 5 4 29 29 H 1.09005 * 109.45464 * 181.75170 * 7 5 4 30 30 H 1.08995 * 109.50624 * 60.75859 * 8 7 5 31 31 H 1.09007 * 109.50535 * 180.84235 * 8 7 5 32 32 H 0.96999 * 119.99345 * 180.02562 * 13 12 10 33 33 H 1.08996 * 109.47006 * 185.56697 * 18 9 8 34 34 H 1.09001 * 109.47464 * 305.57267 * 18 9 8 35 35 H 1.00897 * 111.00106 * 180.02562 * 19 18 9 36 36 H 1.00904 * 111.00480 * 303.95579 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0409 -0.7229 -1.2484 5 7 1.5675 -2.1130 -1.2387 6 6 1.9223 -2.7985 -2.4885 7 6 2.0846 -2.8419 -0.0735 8 6 1.5750 -2.1822 1.2099 9 6 2.0413 -0.7242 1.2494 10 6 3.5473 -0.6777 1.2774 11 1 4.1153 -1.5955 1.3159 12 6 4.2001 0.5365 1.2537 13 7 3.5124 1.6545 1.3369 14 14 6.0611 0.5937 1.1034 15 1 6.5943 -0.7902 1.0269 16 1 6.4359 1.3377 -0.1259 17 1 6.6327 1.2790 2.2904 18 6 1.4841 -0.0429 2.5009 19 7 2.0733 -0.6590 3.6972 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5150 0.8893 22 1 -0.3634 0.5127 -0.8907 23 1 3.1308 -0.7104 -1.2548 24 1 1.6668 -0.2180 -2.1390 25 1 1.4380 -3.7747 -2.5175 26 1 1.5884 -2.2021 -3.3375 27 1 3.0034 -2.9277 -2.5379 28 1 3.1743 -2.8195 -0.0854 29 1 1.7421 -3.8760 -0.1109 30 1 0.4858 -2.2165 1.2290 31 1 1.9712 -2.7145 2.0748 32 1 3.9717 2.5087 1.3198 33 1 1.7332 1.0180 2.4784 34 1 0.4009 -0.1614 2.5274 35 1 1.7206 -0.2264 4.5378 36 1 1.9115 -1.6549 3.7082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = 2.694027 kcal Electronic energy + Delta-G solvation = -15824.716501 eV Core-core repulsion = 13536.520397 eV Total energy + Delta-G solvation = -2288.196104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.81832 -34.96957 -31.97890 -31.56301 -30.31140 -26.61604 -26.27161 -23.90902 -23.14774 -21.31412 -20.06998 -17.78198 -15.58769 -15.18158 -14.62767 -14.32241 -14.00662 -13.83137 -13.50891 -12.81932 -12.52542 -12.11588 -11.89665 -11.55435 -11.26424 -11.11360 -10.90554 -10.85540 -10.66105 -10.36019 -10.16688 -9.87158 -9.69343 -9.07518 -8.76679 -8.49458 -8.18764 -7.45201 -7.22333 -5.80692 -3.81878 3.37053 3.45889 3.48850 4.56622 4.80144 5.46366 5.70515 5.85383 5.86711 5.94628 6.10946 6.24144 6.25891 6.35673 6.45082 6.49238 6.56747 6.67759 6.75828 6.91018 6.98336 7.04139 7.07349 7.21591 7.38189 7.58532 7.72808 7.81861 7.99276 8.05345 8.29130 8.43157 8.63974 8.72280 9.11107 9.78239 11.22290 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.015399 C = 0.012520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.969013 B = 1817.888163 C = 2235.844943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 H 0.101 0.899 4 C 0.075 3.925 5 N -0.542 5.542 6 C 0.027 3.973 7 C 0.068 3.932 8 C -0.104 4.104 9 C 0.081 3.919 10 C -0.466 4.466 11 H 0.048 0.952 12 C 0.070 3.930 13 N -0.890 5.890 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.287 1.287 18 C 0.079 3.921 19 N -0.826 5.826 20 H 0.051 0.949 21 H 0.038 0.962 22 H 0.028 0.972 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.017 0.983 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.254 0.746 33 H 0.097 0.903 34 H -0.023 1.023 35 H 0.312 0.688 36 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -4.851 -2.645 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.119 0.881 4 C -0.052 4.052 5 N -0.267 5.267 6 C -0.122 4.122 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.080 3.920 10 C -0.504 4.504 11 H 0.067 0.933 12 C -0.130 4.130 13 N -0.530 5.530 14 Si 0.710 3.290 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.214 1.214 18 C -0.052 4.052 19 N -0.353 5.353 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.115 0.885 34 H -0.005 1.005 35 H 0.122 0.878 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.997 -4.382 -2.907 6.605 hybrid contribution 0.997 -0.213 0.073 1.022 sum -2.999 -4.594 -2.834 6.175 Atomic orbital electron populations 1.21848 0.98254 1.00522 0.98813 1.21187 0.92196 1.02125 0.94275 0.88105 1.22007 0.98205 0.86962 0.98045 1.62015 1.59884 1.03250 1.01500 1.22279 0.98028 0.98743 0.93136 1.21931 0.97891 0.95162 0.90947 1.21673 0.98267 0.99316 0.94957 1.18150 0.95143 0.88471 0.90190 1.20816 0.90024 0.91757 1.47849 0.93331 1.24735 0.96937 0.95897 0.95390 1.69772 1.34324 0.97096 1.51815 0.86729 0.87429 0.77656 0.77207 1.20296 1.21614 1.21384 1.21992 0.90323 1.02258 0.90599 1.58625 1.66588 1.06374 1.03664 0.92954 0.94277 0.95314 0.94037 0.93658 0.92569 0.92393 0.96397 0.94227 0.93564 0.93948 0.93240 0.93569 0.88487 1.00496 0.87822 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.34 37.16 0.31 -2.44 16 2 C -0.08 -1.75 2.06 -90.50 -0.19 -1.94 16 3 H 0.10 2.57 6.08 -51.93 -0.32 2.25 16 4 C 0.08 1.58 4.69 -3.83 -0.02 1.57 16 5 N -0.54 -10.37 4.19 -242.97 -1.02 -11.39 16 6 C 0.03 0.43 9.62 60.06 0.58 1.01 16 7 C 0.07 1.34 5.25 -3.84 -0.02 1.32 16 8 C -0.10 -2.14 4.20 -26.65 -0.11 -2.25 16 9 C 0.08 1.86 0.11 -155.50 -0.02 1.84 16 10 C -0.47 -12.02 5.58 -34.44 -0.19 -12.21 16 11 H 0.05 1.31 6.99 -52.49 -0.37 0.94 16 12 C 0.07 1.86 5.12 -17.82 -0.09 1.77 16 13 N -0.89 -24.12 9.48 55.43 0.53 -23.60 16 14 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 C 0.08 1.79 4.90 -3.82 -0.02 1.77 16 19 N -0.83 -17.44 9.04 -10.37 -0.09 -17.53 16 20 H 0.05 1.03 6.01 -51.93 -0.31 0.72 16 21 H 0.04 0.78 6.53 -51.93 -0.34 0.44 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.04 0.97 7.31 -51.93 -0.38 0.59 16 24 H 0.04 0.89 8.04 -51.93 -0.42 0.48 16 25 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.06 0.85 8.02 -51.93 -0.42 0.44 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.85 6.84 -51.93 -0.36 0.49 16 29 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 30 H 0.04 0.85 6.58 -51.93 -0.34 0.50 16 31 H 0.05 1.00 6.81 -51.93 -0.35 0.64 16 32 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.10 2.52 6.23 -51.93 -0.32 2.20 16 34 H -0.02 -0.50 6.71 -51.93 -0.35 -0.85 16 35 H 0.31 5.83 9.08 -39.29 -0.36 5.48 16 36 H 0.32 6.19 7.33 -39.29 -0.29 5.90 16 LS Contribution 262.86 15.07 3.96 3.96 Total: -1.00 -26.92 262.86 -7.15 -34.07 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.74 Total: 7.60 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 0.23 Total: -9.56 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.59 Total: -52.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.92 -7.15 -34.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.768 kcal (2) G-P(sol) polarization free energy of solvation -26.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds