Wall clock time and date at job start Mon Mar 30 2020 02:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.53349 * 2 1 4 4 C 1.53042 * 109.50151 * 120.09542 * 2 1 3 5 5 N 1.46841 * 109.52179 * 60.76175 * 4 2 1 6 6 C 1.46903 * 111.00137 * 185.83832 * 5 4 2 7 7 C 1.46852 * 111.20125 * 61.74580 * 5 4 2 8 8 C 1.53042 * 109.51780 * 298.25684 * 7 5 4 9 9 C 1.53116 * 109.27920 * 59.17711 * 8 7 5 10 10 C 1.50700 * 109.52685 * 62.25211 * 9 8 7 11 11 H 1.07999 * 119.99625 * 5.10399 * 10 9 8 12 12 C 1.37865 * 120.00270 * 185.10640 * 10 9 8 13 13 N 1.31518 * 120.00148 * 351.62601 * 12 10 9 14 14 Si 1.86803 * 120.00262 * 171.62790 * 12 10 9 15 15 H 1.48504 * 109.46881 * 59.99636 * 14 12 10 16 16 H 1.48498 * 109.47413 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47093 * 300.00210 * 14 12 10 18 18 C 1.53000 * 109.52195 * 182.37637 * 9 8 7 19 19 N 1.46900 * 109.47227 * 294.92997 * 18 9 8 20 20 H 1.08995 * 109.47044 * 180.09926 * 1 2 3 21 21 H 1.08999 * 109.47186 * 300.10136 * 1 2 3 22 22 H 1.09002 * 109.47069 * 60.10140 * 1 2 3 23 23 H 1.09003 * 109.46208 * 300.74585 * 4 2 1 24 24 H 1.09002 * 109.46160 * 180.78185 * 4 2 1 25 25 H 1.09008 * 109.47100 * 299.74977 * 6 5 4 26 26 H 1.09001 * 109.46728 * 59.74300 * 6 5 4 27 27 H 1.09000 * 109.47158 * 179.74646 * 6 5 4 28 28 H 1.08995 * 109.46621 * 178.24003 * 7 5 4 29 29 H 1.09001 * 109.46178 * 58.26423 * 7 5 4 30 30 H 1.09004 * 109.50189 * 299.23483 * 8 7 5 31 31 H 1.09000 * 109.53601 * 179.13569 * 8 7 5 32 32 H 0.96997 * 119.99991 * 5.97155 * 13 12 10 33 33 H 1.09005 * 109.47032 * 54.93079 * 18 9 8 34 34 H 1.09005 * 109.47263 * 174.92393 * 18 9 8 35 35 H 1.00904 * 110.99876 * 183.76057 * 19 18 9 36 36 H 1.00904 * 110.99528 * 307.71169 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7234 1.2481 5 7 1.5675 -2.1134 1.2380 6 6 1.9222 -2.7995 2.4876 7 6 2.0846 -2.8420 0.0726 8 6 1.5750 -2.1818 -1.2106 9 6 2.0413 -0.7239 -1.2486 10 6 3.5473 -0.6772 -1.2766 11 1 4.1145 -1.5932 -1.3514 12 6 4.2009 0.5346 -1.2067 13 7 3.5173 1.6557 -1.2816 14 14 6.0574 0.5844 -1.0055 15 1 6.6984 -0.1032 -2.1552 16 1 6.5125 1.9971 -0.9579 17 1 6.4372 -0.1014 0.2557 18 6 1.4853 -0.0418 -2.5002 19 7 2.0668 -0.6649 -3.6967 20 1 -0.3633 -1.0276 0.0018 21 1 -0.3633 0.5154 0.8891 22 1 -0.3633 0.5123 -0.8909 23 1 1.6669 -0.2188 2.1390 24 1 3.1308 -0.7109 1.2545 25 1 3.0060 -2.8041 2.6046 26 1 1.4680 -2.2778 3.3300 27 1 1.5558 -3.8256 2.4553 28 1 1.7423 -3.8762 0.1096 29 1 3.1743 -2.8196 0.0845 30 1 0.4857 -2.2162 -1.2297 31 1 1.9711 -2.7132 -2.0760 32 1 2.5478 1.6324 -1.2987 33 1 0.4012 -0.1527 -2.5233 34 1 1.7418 1.0175 -2.4811 35 1 1.7626 -0.1922 -4.5347 36 1 3.0740 -0.6873 -3.6395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984531.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:20 Heat of formation + Delta-G solvation = 3.599992 kcal Electronic energy + Delta-G solvation = -15898.913953 eV Core-core repulsion = 13610.757135 eV Total energy + Delta-G solvation = -2288.156818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.07691 -35.31885 -31.99738 -31.65760 -30.42768 -26.42873 -26.31313 -24.14155 -23.04349 -21.54199 -20.18521 -18.03923 -16.38115 -15.19372 -14.50375 -14.14128 -14.05738 -13.96497 -13.67317 -12.85127 -12.38204 -12.32980 -12.12946 -11.57610 -11.48315 -11.19821 -10.88987 -10.73182 -10.71022 -10.35134 -10.22263 -10.04000 -10.02449 -9.14668 -8.97666 -8.39007 -8.17826 -7.54465 -7.49003 -6.18264 -4.03166 3.38873 3.41056 3.58836 4.48813 4.74874 5.32019 5.65249 5.78035 5.79438 5.90039 6.09864 6.14817 6.20777 6.22117 6.29231 6.45479 6.49344 6.63697 6.71043 6.79156 6.84110 6.90155 7.07985 7.12407 7.14874 7.33668 7.42594 7.53050 7.91890 7.95821 8.27114 8.40220 8.43537 8.63804 8.91628 9.63235 11.02152 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.015677 C = 0.012633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.389721 B = 1785.649162 C = 2215.964273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.082 0.918 4 C 0.079 3.921 5 N -0.541 5.541 6 C 0.027 3.973 7 C 0.065 3.935 8 C -0.084 4.084 9 C 0.066 3.934 10 C -0.573 4.573 11 H 0.047 0.953 12 C 0.024 3.976 13 N -0.919 5.919 14 Si 1.055 2.945 15 H -0.289 1.289 16 H -0.285 1.285 17 H -0.291 1.291 18 C 0.066 3.934 19 N -0.844 5.844 20 H 0.059 0.941 21 H 0.031 0.969 22 H 0.039 0.961 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.018 0.982 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.280 0.720 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.312 0.688 36 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 -4.454 2.717 5.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.049 4.049 5 N -0.266 5.266 6 C -0.122 4.122 7 C -0.063 4.063 8 C -0.122 4.122 9 C 0.065 3.935 10 C -0.612 4.612 11 H 0.066 0.934 12 C -0.180 4.180 13 N -0.560 5.560 14 Si 0.885 3.115 15 H -0.216 1.216 16 H -0.210 1.210 17 H -0.218 1.218 18 C -0.066 4.066 19 N -0.373 5.373 20 H 0.078 0.922 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.283 -4.063 2.979 5.531 hybrid contribution 0.115 -0.111 -0.027 0.162 sum -2.167 -4.173 2.952 5.553 Atomic orbital electron populations 1.21840 0.97460 1.01256 0.98984 1.21347 0.93199 1.00802 0.95660 0.89971 1.21903 0.98246 0.87334 0.97381 1.62004 1.59853 1.03001 1.01700 1.22280 0.98095 0.98726 0.93071 1.22018 0.97901 0.95291 0.91051 1.21397 0.98179 0.97794 0.94820 1.18286 0.95261 0.90723 0.89193 1.21828 0.90530 0.94741 1.54068 0.93446 1.25562 1.06127 0.92375 0.93979 1.70894 1.10072 1.28726 1.46316 0.83731 0.75470 0.75828 0.76491 1.21612 1.21033 1.21774 1.22018 0.95510 0.96895 0.92130 1.58863 1.15920 1.59256 1.03242 0.92222 0.94962 0.94236 0.93511 0.93876 0.96371 0.92374 0.92435 0.93440 0.94324 0.94047 0.92185 0.90314 0.94783 0.94978 0.87954 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.34 37.16 0.31 -2.42 16 2 C -0.09 -2.01 1.93 -90.54 -0.17 -2.18 16 3 H 0.08 2.05 5.21 -51.93 -0.27 1.78 16 4 C 0.08 1.67 4.69 -3.83 -0.02 1.66 16 5 N -0.54 -10.47 4.19 -242.95 -1.02 -11.48 16 6 C 0.03 0.44 9.59 60.07 0.58 1.01 16 7 C 0.07 1.30 5.25 -3.83 -0.02 1.28 16 8 C -0.08 -1.80 4.34 -26.65 -0.12 -1.91 16 9 C 0.07 1.51 0.11 -155.54 -0.02 1.49 16 10 C -0.57 -14.45 4.63 -34.44 -0.16 -14.61 16 11 H 0.05 1.25 7.08 -52.49 -0.37 0.88 16 12 C 0.02 0.62 5.10 -17.82 -0.09 0.53 16 13 N -0.92 -25.35 12.45 55.43 0.69 -24.66 16 14 Si 1.06 24.13 29.91 -169.99 -5.08 19.04 16 15 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.07 1.48 4.94 -3.82 -0.02 1.46 16 19 N -0.84 -17.82 9.13 -10.37 -0.09 -17.91 16 20 H 0.06 1.18 6.01 -51.93 -0.31 0.87 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.04 0.76 6.51 -51.93 -0.34 0.42 16 23 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 24 H 0.04 1.02 7.31 -51.93 -0.38 0.64 16 25 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 28 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.04 0.84 6.89 -51.93 -0.36 0.48 16 30 H 0.04 0.87 6.58 -51.93 -0.34 0.53 16 31 H 0.06 1.32 7.83 -51.93 -0.41 0.92 16 32 H 0.28 7.60 3.29 -40.82 -0.13 7.47 16 33 H 0.03 0.74 6.68 -51.93 -0.35 0.39 16 34 H 0.03 0.80 5.39 -51.93 -0.28 0.52 16 35 H 0.31 5.84 9.08 -39.29 -0.36 5.48 16 36 H 0.35 7.93 7.58 -39.29 -0.30 7.64 16 LS Contribution 260.10 15.07 3.92 3.92 Total: -1.00 -26.50 260.10 -6.84 -33.33 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.52 Total: 11.46 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 0.27 Total: -13.69 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.42 Total: -54.06 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.04 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.50 -6.84 -33.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984531.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.933 kcal (2) G-P(sol) polarization free energy of solvation -26.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds