Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.53349 * 2 1 4 4 C 1.53042 * 109.50151 * 120.09542 * 2 1 3 5 5 N 1.46841 * 109.52179 * 60.76175 * 4 2 1 6 6 C 1.46903 * 111.00137 * 185.83832 * 5 4 2 7 7 C 1.46852 * 111.20125 * 61.74580 * 5 4 2 8 8 C 1.53042 * 109.51780 * 298.25684 * 7 5 4 9 9 C 1.53116 * 109.27920 * 59.17711 * 8 7 5 10 10 C 1.50700 * 109.52685 * 62.25211 * 9 8 7 11 11 H 1.07999 * 119.99625 * 5.10399 * 10 9 8 12 12 C 1.37865 * 120.00270 * 185.10640 * 10 9 8 13 13 N 1.31518 * 120.00148 * 351.62601 * 12 10 9 14 14 Si 1.86803 * 120.00262 * 171.62790 * 12 10 9 15 15 H 1.48504 * 109.46881 * 59.99636 * 14 12 10 16 16 H 1.48498 * 109.47413 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47093 * 300.00210 * 14 12 10 18 18 C 1.53000 * 109.52195 * 182.37637 * 9 8 7 19 19 N 1.46900 * 109.47227 * 294.92997 * 18 9 8 20 20 H 1.08995 * 109.47044 * 180.09926 * 1 2 3 21 21 H 1.08999 * 109.47186 * 300.10136 * 1 2 3 22 22 H 1.09002 * 109.47069 * 60.10140 * 1 2 3 23 23 H 1.09003 * 109.46208 * 300.74585 * 4 2 1 24 24 H 1.09002 * 109.46160 * 180.78185 * 4 2 1 25 25 H 1.09008 * 109.47100 * 299.74977 * 6 5 4 26 26 H 1.09001 * 109.46728 * 59.74300 * 6 5 4 27 27 H 1.09000 * 109.47158 * 179.74646 * 6 5 4 28 28 H 1.08995 * 109.46621 * 178.24003 * 7 5 4 29 29 H 1.09001 * 109.46178 * 58.26423 * 7 5 4 30 30 H 1.09004 * 109.50189 * 299.23483 * 8 7 5 31 31 H 1.09000 * 109.53601 * 179.13569 * 8 7 5 32 32 H 0.96997 * 119.99991 * 5.97155 * 13 12 10 33 33 H 1.09005 * 109.47032 * 54.93079 * 18 9 8 34 34 H 1.09005 * 109.47263 * 174.92393 * 18 9 8 35 35 H 1.00904 * 110.99876 * 183.76057 * 19 18 9 36 36 H 1.00904 * 110.99528 * 307.71169 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7234 1.2481 5 7 1.5675 -2.1134 1.2380 6 6 1.9222 -2.7995 2.4876 7 6 2.0846 -2.8420 0.0726 8 6 1.5750 -2.1818 -1.2106 9 6 2.0413 -0.7239 -1.2486 10 6 3.5473 -0.6772 -1.2766 11 1 4.1145 -1.5932 -1.3514 12 6 4.2009 0.5346 -1.2067 13 7 3.5173 1.6557 -1.2816 14 14 6.0574 0.5844 -1.0055 15 1 6.6984 -0.1032 -2.1552 16 1 6.5125 1.9971 -0.9579 17 1 6.4372 -0.1014 0.2557 18 6 1.4853 -0.0418 -2.5002 19 7 2.0668 -0.6649 -3.6967 20 1 -0.3633 -1.0276 0.0018 21 1 -0.3633 0.5154 0.8891 22 1 -0.3633 0.5123 -0.8909 23 1 1.6669 -0.2188 2.1390 24 1 3.1308 -0.7109 1.2545 25 1 3.0060 -2.8041 2.6046 26 1 1.4680 -2.2778 3.3300 27 1 1.5558 -3.8256 2.4553 28 1 1.7423 -3.8762 0.1096 29 1 3.1743 -2.8196 0.0845 30 1 0.4857 -2.2162 -1.2297 31 1 1.9711 -2.7132 -2.0760 32 1 2.5478 1.6324 -1.2987 33 1 0.4012 -0.1527 -2.5233 34 1 1.7418 1.0175 -2.4811 35 1 1.7626 -0.1922 -4.5347 36 1 3.0740 -0.6873 -3.6395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984531.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -14.362577 kcal Electronic energy + Delta-G solvation = -15899.692869 eV Core-core repulsion = 13610.757135 eV Total energy + Delta-G solvation = -2288.935734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79933 -36.99472 -33.83317 -33.43352 -32.11069 -28.09365 -27.95629 -26.03533 -24.65836 -23.22272 -21.90932 -19.91423 -18.21245 -16.90483 -16.13511 -15.86635 -15.76956 -15.64722 -15.36257 -14.65325 -14.10574 -13.89285 -13.78929 -13.22766 -13.13846 -12.81225 -12.63079 -12.48009 -12.37144 -12.06060 -12.01688 -11.83594 -11.71616 -10.90664 -10.73133 -10.29940 -10.10590 -9.33554 -9.09416 -8.21587 -6.07614 1.53217 1.56740 1.75556 2.59926 3.21269 3.32392 4.01436 4.16981 4.28134 4.33976 4.48532 4.58676 4.63478 4.69104 4.81410 4.84021 4.89633 4.94758 4.99280 5.05820 5.15524 5.20597 5.35111 5.38674 5.44459 5.58200 5.68752 5.78805 6.27788 6.31437 6.38627 6.47951 6.58607 6.83680 6.96473 7.63197 8.98702 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.015677 C = 0.012633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.389721 B = 1785.649162 C = 2215.964273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 H 0.052 0.948 4 C 0.086 3.914 5 N -0.539 5.539 6 C 0.026 3.974 7 C 0.069 3.931 8 C -0.078 4.078 9 C 0.061 3.939 10 C -0.565 4.565 11 H 0.032 0.968 12 C -0.014 4.014 13 N -0.945 5.945 14 Si 1.090 2.910 15 H -0.277 1.277 16 H -0.293 1.293 17 H -0.285 1.285 18 C 0.073 3.927 19 N -0.838 5.838 20 H 0.063 0.937 21 H 0.046 0.954 22 H 0.039 0.961 23 H 0.060 0.940 24 H 0.010 0.990 25 H 0.012 0.988 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.276 0.724 33 H 0.044 0.956 34 H 0.007 0.993 35 H 0.326 0.674 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -5.638 3.309 7.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.111 4.111 3 H 0.070 0.930 4 C -0.042 4.042 5 N -0.264 5.264 6 C -0.122 4.122 7 C -0.059 4.059 8 C -0.116 4.116 9 C 0.060 3.940 10 C -0.604 4.604 11 H 0.050 0.950 12 C -0.213 4.213 13 N -0.587 5.587 14 Si 0.916 3.084 15 H -0.202 1.202 16 H -0.219 1.219 17 H -0.211 1.211 18 C -0.059 4.059 19 N -0.367 5.367 20 H 0.082 0.918 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.078 0.922 24 H 0.029 0.971 25 H 0.031 0.969 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.137 0.863 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.031 -5.268 3.564 7.045 hybrid contribution 0.317 0.225 -0.210 0.442 sum -2.714 -5.042 3.354 6.637 Atomic orbital electron populations 1.21716 0.95305 1.01651 0.99741 1.21259 0.94956 0.99037 0.95841 0.93028 1.21758 0.96194 0.88868 0.97425 1.62016 1.59381 1.02129 1.02848 1.22395 0.98068 0.99911 0.91873 1.21960 0.96465 0.96624 0.90824 1.21304 0.98411 0.96554 0.95316 1.18326 0.93958 0.92002 0.89699 1.21922 0.91938 0.93748 1.52783 0.94976 1.26405 1.08668 0.92364 0.93892 1.70945 1.10109 1.29414 1.48279 0.83248 0.72638 0.75392 0.77083 1.20232 1.21881 1.21130 1.21908 0.96010 0.95377 0.92575 1.58835 1.15104 1.59180 1.03549 0.91811 0.93535 0.94228 0.92160 0.97123 0.96888 0.90747 0.90114 0.90788 0.96649 0.93360 0.93191 0.90781 0.93794 0.97505 0.86348 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.34 71.98 0.60 -4.19 16 2 C -0.09 -4.00 1.93 -10.74 -0.02 -4.02 16 3 H 0.05 2.61 5.21 -2.39 -0.01 2.60 16 4 C 0.09 3.55 4.69 86.33 0.41 3.95 16 5 N -0.54 -19.64 4.19 -922.55 -3.87 -23.50 16 6 C 0.03 0.75 9.59 127.69 1.22 1.98 16 7 C 0.07 2.64 5.25 86.33 0.45 3.09 16 8 C -0.08 -3.22 4.34 30.65 0.13 -3.09 16 9 C 0.06 2.76 0.11 -52.85 -0.01 2.75 16 10 C -0.57 -28.66 4.63 25.60 0.12 -28.54 16 11 H 0.03 1.70 7.08 -2.91 -0.02 1.68 16 12 C -0.01 -0.71 5.10 84.65 0.43 -0.28 16 13 N -0.94 -52.99 12.45 21.44 0.27 -52.72 16 14 Si 1.09 49.03 29.91 68.60 2.05 51.08 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 16 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 C 0.07 3.26 4.94 86.30 0.43 3.69 16 19 N -0.84 -34.81 9.13 -186.71 -1.71 -36.52 16 20 H 0.06 2.35 6.01 -2.39 -0.01 2.34 16 21 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.04 1.47 6.51 -2.39 -0.02 1.45 16 23 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 24 H 0.01 0.50 7.31 -2.39 -0.02 0.48 16 25 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 28 H 0.07 2.44 8.09 -2.39 -0.02 2.42 16 29 H 0.02 0.66 6.89 -2.39 -0.02 0.64 16 30 H 0.05 1.91 6.58 -2.39 -0.02 1.90 16 31 H 0.05 2.14 7.83 -2.39 -0.02 2.12 16 32 H 0.28 15.31 3.29 -92.71 -0.30 15.01 16 33 H 0.04 1.86 6.68 -2.38 -0.02 1.85 16 34 H 0.01 0.35 5.39 -2.38 -0.01 0.34 16 35 H 0.33 11.91 9.08 -89.69 -0.81 11.09 16 36 H 0.34 15.39 7.58 -89.69 -0.68 14.71 16 Total: -1.00 -55.67 260.10 0.56 -55.11 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.05 Total: 31.21 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 3.77 Total: -24.67 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.31 Total: -112.74 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.08 kcal Total: -55.67 0.56 -55.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984531.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.750 kcal (2) G-P(sol) polarization free energy of solvation -55.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds