Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.53632 * 2 1 4 4 C 1.53046 * 109.49996 * 120.08967 * 2 1 3 5 5 N 1.46840 * 109.52072 * 179.12139 * 4 2 1 6 6 C 1.46900 * 110.99878 * 174.16299 * 5 4 2 7 7 C 1.46844 * 111.20276 * 298.26200 * 5 4 2 8 8 C 1.53031 * 109.52402 * 61.74290 * 7 5 4 9 9 C 1.53110 * 109.50888 * 239.89573 * 2 1 3 10 10 C 1.50701 * 109.52452 * 302.30965 * 9 2 1 11 11 H 1.07996 * 120.00149 * 275.25313 * 10 9 2 12 12 C 1.37879 * 119.99880 * 95.25093 * 10 9 2 13 13 N 1.31519 * 120.00144 * 336.56243 * 12 10 9 14 14 Si 1.86805 * 119.99915 * 156.55933 * 12 10 9 15 15 H 1.48500 * 109.47054 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46811 * 120.00401 * 14 12 10 17 17 H 1.48505 * 109.46816 * 240.00072 * 14 12 10 18 18 C 1.53004 * 109.52516 * 62.50053 * 9 2 1 19 19 N 1.46890 * 109.47280 * 185.22393 * 18 9 2 20 20 H 1.08993 * 109.48126 * 299.90734 * 1 2 3 21 21 H 1.09004 * 109.47085 * 59.91174 * 1 2 3 22 22 H 1.09007 * 109.46863 * 179.90106 * 1 2 3 23 23 H 1.08992 * 109.46520 * 299.14229 * 4 2 1 24 24 H 1.08998 * 109.45948 * 59.10917 * 4 2 1 25 25 H 1.08998 * 109.47023 * 60.00214 * 6 5 4 26 26 H 1.09003 * 109.47180 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47229 * 300.00014 * 6 5 4 28 28 H 1.09008 * 109.46576 * 181.75915 * 7 5 4 29 29 H 1.09004 * 109.46356 * 301.73349 * 7 5 4 30 30 H 1.08998 * 109.50633 * 60.76090 * 8 7 5 31 31 H 1.08998 * 109.50675 * 180.84147 * 8 7 5 32 32 H 0.96994 * 119.99828 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.46798 * 305.22702 * 18 9 2 34 34 H 1.09000 * 109.46840 * 65.21719 * 18 9 2 35 35 H 1.00907 * 111.00217 * 173.58660 * 19 18 9 36 36 H 1.00903 * 111.00510 * 297.53514 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0408 -0.7233 1.2483 5 7 3.5091 -0.7419 1.2381 6 6 4.0370 -1.3056 2.4878 7 6 4.0229 -1.4729 0.0728 8 6 3.5713 -0.7720 -1.2104 9 6 2.0413 -0.7239 -1.2485 10 6 1.4939 -2.1277 -1.2765 11 1 1.9983 -2.9148 -0.7358 12 6 0.3490 -2.4071 -1.9922 13 7 -0.5107 -1.4480 -2.2582 14 14 0.0190 -4.1479 -2.5840 15 1 1.1308 -5.0349 -2.1572 16 1 -1.2557 -4.6361 -1.9992 17 1 -0.0808 -4.1563 -4.0657 18 6 1.5844 0.0294 -2.4995 19 7 1.9675 -0.7312 -3.6963 20 1 -0.3635 0.5123 0.8907 21 1 -0.3633 0.5152 -0.8892 22 1 -0.3633 -1.0277 -0.0018 23 1 1.6903 -0.2021 2.1390 24 1 1.6647 -1.7463 1.2547 25 1 3.6753 -2.3269 2.6070 26 1 5.1265 -1.3072 2.4539 27 1 3.7010 -0.7004 3.3298 28 1 5.1121 -1.4961 0.1098 29 1 3.6374 -2.4924 0.0846 30 1 3.9678 0.2431 -1.2296 31 1 3.9402 -1.3231 -2.0754 32 1 -1.3159 -1.6445 -2.7621 33 1 0.5012 0.1491 -2.4762 34 1 2.0578 1.0109 -2.5257 35 1 1.5870 -0.3092 -4.5302 36 1 2.9703 -0.8212 -3.7621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = 13.596592 kcal Electronic energy + Delta-G solvation = -15854.294844 eV Core-core repulsion = 13566.571511 eV Total energy + Delta-G solvation = -2287.723333 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.71695 -35.16827 -31.92643 -31.41236 -30.44318 -26.48120 -25.79020 -24.33512 -23.12562 -20.53864 -20.09627 -18.42094 -15.35165 -15.00786 -14.73043 -14.37677 -14.00210 -13.73004 -13.30862 -12.88590 -12.69146 -12.10366 -11.63001 -11.44747 -11.31660 -10.98210 -10.78485 -10.72702 -10.42424 -10.31329 -10.23783 -9.82898 -9.55241 -8.96590 -8.65199 -8.58011 -7.78799 -7.47891 -7.14864 -5.76107 -3.73077 3.44646 3.54170 3.58027 4.64009 4.74679 5.47049 5.67785 5.82855 5.89808 5.96810 6.14026 6.20294 6.29550 6.35660 6.45513 6.57506 6.73175 6.78114 6.86853 6.98645 7.05159 7.08870 7.29173 7.35993 7.55333 7.65633 7.87180 7.91084 7.95820 8.19180 8.30526 8.52741 8.68906 8.84830 9.19829 9.87870 11.20586 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.013471 C = 0.012789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.481098 B = 2078.084227 C = 2188.912879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 H 0.031 0.969 4 C 0.073 3.927 5 N -0.547 5.547 6 C 0.028 3.972 7 C 0.066 3.934 8 C -0.100 4.100 9 C 0.077 3.923 10 C -0.499 4.499 11 H 0.046 0.954 12 C 0.106 3.894 13 N -0.863 5.863 14 Si 0.876 3.124 15 H -0.281 1.281 16 H -0.297 1.297 17 H -0.286 1.286 18 C 0.069 3.931 19 N -0.817 5.817 20 H 0.000 1.000 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.018 0.982 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.251 0.749 33 H 0.129 0.871 34 H -0.036 1.036 35 H 0.312 0.688 36 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 2.079 3.117 5.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 H 0.050 0.950 4 C -0.054 4.054 5 N -0.272 5.272 6 C -0.121 4.121 7 C -0.062 4.062 8 C -0.139 4.139 9 C 0.076 3.924 10 C -0.535 4.535 11 H 0.064 0.936 12 C -0.097 4.097 13 N -0.501 5.501 14 Si 0.705 3.295 15 H -0.207 1.207 16 H -0.225 1.225 17 H -0.212 1.212 18 C -0.061 4.061 19 N -0.343 5.343 20 H 0.019 0.981 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.146 0.854 34 H -0.019 1.019 35 H 0.122 0.878 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.160 1.988 3.332 5.689 hybrid contribution 0.185 -0.966 -0.618 1.162 sum 4.346 1.021 2.714 5.224 Atomic orbital electron populations 1.21656 0.94358 1.03260 0.97618 1.21187 0.96047 0.96137 0.95392 0.95037 1.22048 0.85375 0.99946 0.98059 1.61998 1.09789 1.53630 1.01735 1.22278 0.99563 0.97241 0.93047 1.21987 0.96910 0.96336 0.90966 1.21647 0.99754 0.97490 0.94961 1.18229 0.88761 0.95274 0.90118 1.20590 1.09331 0.92569 1.31050 0.93593 1.24480 0.94917 0.95482 0.94788 1.69931 1.09223 1.31707 1.39241 0.86875 0.76824 0.86786 0.79000 1.20658 1.22484 1.21205 1.22276 1.04910 0.89060 0.89884 1.58540 1.13862 1.57839 1.04012 0.98066 0.92068 0.90481 0.93524 0.93953 0.96362 0.92473 0.92313 0.93469 0.94216 0.94722 0.92710 0.93867 0.85365 1.01856 0.87850 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 7.53 37.16 0.28 -2.23 16 2 C -0.07 -1.51 2.16 -90.54 -0.20 -1.70 16 3 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.07 1.52 4.54 -3.83 -0.02 1.50 16 5 N -0.55 -10.60 4.91 -242.96 -1.19 -11.79 16 6 C 0.03 0.44 9.59 60.06 0.58 1.01 16 7 C 0.07 1.30 5.26 -3.84 -0.02 1.28 16 8 C -0.10 -2.12 4.59 -26.65 -0.12 -2.24 16 9 C 0.08 1.77 0.33 -155.54 -0.05 1.72 16 10 C -0.50 -12.69 5.50 -34.44 -0.19 -12.88 16 11 H 0.05 1.24 6.26 -52.49 -0.33 0.91 16 12 C 0.11 2.73 3.69 -17.82 -0.07 2.67 16 13 N -0.86 -22.20 7.70 55.43 0.43 -21.77 16 14 Si 0.88 21.36 29.60 -169.99 -5.03 16.33 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 C 0.07 1.58 4.77 -3.83 -0.02 1.56 16 19 N -0.82 -17.61 8.23 -10.37 -0.09 -17.70 16 20 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 21 H 0.06 1.44 5.94 -51.93 -0.31 1.13 16 22 H 0.08 1.92 5.96 -51.93 -0.31 1.62 16 23 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 24 H 0.04 0.96 7.27 -51.93 -0.38 0.58 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.84 8.09 -51.92 -0.42 0.42 16 29 H 0.04 0.86 6.43 -51.93 -0.33 0.53 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 1.15 6.97 -51.93 -0.36 0.79 16 32 H 0.25 6.40 8.31 -40.82 -0.34 6.07 16 33 H 0.13 3.23 3.90 -51.93 -0.20 3.03 16 34 H -0.04 -0.82 8.14 -51.93 -0.42 -1.25 16 35 H 0.31 6.15 9.08 -39.29 -0.36 5.80 16 36 H 0.31 6.23 7.57 -39.29 -0.30 5.94 16 LS Contribution 260.56 15.07 3.93 3.93 Total: -1.00 -26.08 260.56 -7.59 -33.67 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.81 Total: 6.64 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 0.18 Total: -9.31 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.85 Total: -51.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.08 -7.59 -33.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.271 kcal (2) G-P(sol) polarization free energy of solvation -26.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds