Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.53632 * 2 1 4 4 C 1.53046 * 109.49996 * 120.08967 * 2 1 3 5 5 N 1.46840 * 109.52072 * 179.12139 * 4 2 1 6 6 C 1.46900 * 110.99878 * 174.16299 * 5 4 2 7 7 C 1.46844 * 111.20276 * 298.26200 * 5 4 2 8 8 C 1.53031 * 109.52402 * 61.74290 * 7 5 4 9 9 C 1.53110 * 109.50888 * 239.89573 * 2 1 3 10 10 C 1.50701 * 109.52452 * 302.30965 * 9 2 1 11 11 H 1.07996 * 120.00149 * 275.25313 * 10 9 2 12 12 C 1.37879 * 119.99880 * 95.25093 * 10 9 2 13 13 N 1.31519 * 120.00144 * 336.56243 * 12 10 9 14 14 Si 1.86805 * 119.99915 * 156.55933 * 12 10 9 15 15 H 1.48500 * 109.47054 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46811 * 120.00401 * 14 12 10 17 17 H 1.48505 * 109.46816 * 240.00072 * 14 12 10 18 18 C 1.53004 * 109.52516 * 62.50053 * 9 2 1 19 19 N 1.46890 * 109.47280 * 185.22393 * 18 9 2 20 20 H 1.08993 * 109.48126 * 299.90734 * 1 2 3 21 21 H 1.09004 * 109.47085 * 59.91174 * 1 2 3 22 22 H 1.09007 * 109.46863 * 179.90106 * 1 2 3 23 23 H 1.08992 * 109.46520 * 299.14229 * 4 2 1 24 24 H 1.08998 * 109.45948 * 59.10917 * 4 2 1 25 25 H 1.08998 * 109.47023 * 60.00214 * 6 5 4 26 26 H 1.09003 * 109.47180 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47229 * 300.00014 * 6 5 4 28 28 H 1.09008 * 109.46576 * 181.75915 * 7 5 4 29 29 H 1.09004 * 109.46356 * 301.73349 * 7 5 4 30 30 H 1.08998 * 109.50633 * 60.76090 * 8 7 5 31 31 H 1.08998 * 109.50675 * 180.84147 * 8 7 5 32 32 H 0.96994 * 119.99828 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.46798 * 305.22702 * 18 9 2 34 34 H 1.09000 * 109.46840 * 65.21719 * 18 9 2 35 35 H 1.00907 * 111.00217 * 173.58660 * 19 18 9 36 36 H 1.00903 * 111.00510 * 297.53514 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0408 -0.7233 1.2483 5 7 3.5091 -0.7419 1.2381 6 6 4.0370 -1.3056 2.4878 7 6 4.0229 -1.4729 0.0728 8 6 3.5713 -0.7720 -1.2104 9 6 2.0413 -0.7239 -1.2485 10 6 1.4939 -2.1277 -1.2765 11 1 1.9983 -2.9148 -0.7358 12 6 0.3490 -2.4071 -1.9922 13 7 -0.5107 -1.4480 -2.2582 14 14 0.0190 -4.1479 -2.5840 15 1 1.1308 -5.0349 -2.1572 16 1 -1.2557 -4.6361 -1.9992 17 1 -0.0808 -4.1563 -4.0657 18 6 1.5844 0.0294 -2.4995 19 7 1.9675 -0.7312 -3.6963 20 1 -0.3635 0.5123 0.8907 21 1 -0.3633 0.5152 -0.8892 22 1 -0.3633 -1.0277 -0.0018 23 1 1.6903 -0.2021 2.1390 24 1 1.6647 -1.7463 1.2547 25 1 3.6753 -2.3269 2.6070 26 1 5.1265 -1.3072 2.4539 27 1 3.7010 -0.7004 3.3298 28 1 5.1121 -1.4961 0.1098 29 1 3.6374 -2.4924 0.0846 30 1 3.9678 0.2431 -1.2296 31 1 3.9402 -1.3231 -2.0754 32 1 -1.3159 -1.6445 -2.7621 33 1 0.5012 0.1491 -2.4762 34 1 2.0578 1.0109 -2.5257 35 1 1.5870 -0.3092 -4.5302 36 1 2.9703 -0.8212 -3.7621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -4.250782 kcal Electronic energy + Delta-G solvation = -15855.068764 eV Core-core repulsion = 13566.571511 eV Total energy + Delta-G solvation = -2288.497253 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41096 -36.83257 -33.69538 -33.30077 -32.11165 -28.10130 -27.51391 -26.23080 -24.72030 -22.24871 -21.75578 -20.29247 -17.23739 -16.67028 -16.63044 -15.95351 -15.70710 -15.41034 -14.98186 -14.65602 -14.37685 -13.78045 -13.29720 -13.11989 -13.00974 -12.68738 -12.60463 -12.49383 -12.23539 -12.12663 -11.91872 -11.73109 -11.41185 -10.71006 -10.49299 -10.38358 -9.74071 -9.06000 -8.88684 -7.74172 -5.73388 1.46468 1.54575 1.58905 2.64849 3.24730 3.48040 4.23399 4.28044 4.33137 4.46504 4.57303 4.72286 4.74545 4.78875 4.90025 4.98195 5.01611 5.04805 5.16927 5.24981 5.30815 5.39154 5.49697 5.58557 5.73887 5.90770 5.98180 6.18429 6.34055 6.41228 6.46851 6.66438 6.90122 7.14583 7.25612 7.86582 9.19049 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.013471 C = 0.012789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.481098 B = 2078.084227 C = 2188.912879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.069 4.069 3 H 0.032 0.968 4 C 0.081 3.919 5 N -0.551 5.551 6 C 0.026 3.974 7 C 0.070 3.930 8 C -0.097 4.097 9 C 0.072 3.928 10 C -0.497 4.497 11 H 0.027 0.973 12 C 0.080 3.920 13 N -0.866 5.866 14 Si 0.911 3.089 15 H -0.288 1.288 16 H -0.300 1.300 17 H -0.291 1.291 18 C 0.075 3.925 19 N -0.825 5.825 20 H 0.020 0.980 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.017 0.983 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.247 0.753 33 H 0.109 0.891 34 H -0.032 1.032 35 H 0.322 0.678 36 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 2.574 3.782 7.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.088 4.088 3 H 0.051 0.949 4 C -0.047 4.047 5 N -0.276 5.276 6 C -0.122 4.122 7 C -0.058 4.058 8 C -0.135 4.135 9 C 0.071 3.929 10 C -0.535 4.535 11 H 0.045 0.955 12 C -0.122 4.122 13 N -0.504 5.504 14 Si 0.741 3.259 15 H -0.214 1.214 16 H -0.228 1.228 17 H -0.217 1.217 18 C -0.056 4.056 19 N -0.353 5.353 20 H 0.039 0.961 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.035 0.965 25 H 0.033 0.967 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.126 0.874 34 H -0.015 1.015 35 H 0.133 0.867 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.232 2.482 3.998 7.036 hybrid contribution -0.134 -1.121 -0.810 1.390 sum 5.097 1.361 3.187 6.164 Atomic orbital electron populations 1.21463 0.94808 1.01441 0.97894 1.21155 0.95658 0.96175 0.95848 0.94932 1.21899 0.86538 0.98367 0.97913 1.62015 1.08679 1.53936 1.02954 1.22383 1.00785 0.97164 0.91828 1.21931 0.98276 0.94843 0.90776 1.21564 0.98233 0.97915 0.95767 1.18268 0.90112 0.93968 0.90566 1.20606 1.08966 0.93329 1.30561 0.95521 1.24782 0.95229 0.96731 0.95410 1.70036 1.09083 1.31924 1.39375 0.86339 0.76139 0.85221 0.78161 1.21414 1.22791 1.21734 1.22089 1.03609 0.89392 0.90496 1.58460 1.14768 1.57895 1.04133 0.96079 0.93443 0.93197 0.91869 0.96456 0.96712 0.90380 0.90621 0.90937 0.96484 0.94160 0.92903 0.94244 0.87412 1.01464 0.86731 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.38 7.53 71.98 0.54 -3.84 16 2 C -0.07 -2.97 2.16 -10.74 -0.02 -2.99 16 3 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.08 3.22 4.54 86.33 0.39 3.61 16 5 N -0.55 -20.05 4.91 -922.60 -4.53 -24.58 16 6 C 0.03 0.76 9.59 127.69 1.22 1.99 16 7 C 0.07 2.63 5.26 86.32 0.45 3.08 16 8 C -0.10 -3.92 4.59 30.65 0.14 -3.78 16 9 C 0.07 3.24 0.33 -52.85 -0.02 3.22 16 10 C -0.50 -25.27 5.50 25.60 0.14 -25.13 16 11 H 0.03 1.45 6.26 -2.91 -0.02 1.43 16 12 C 0.08 4.12 3.69 84.65 0.31 4.43 16 13 N -0.87 -44.57 7.70 21.45 0.17 -44.41 16 14 Si 0.91 43.86 29.60 68.60 2.03 45.89 16 15 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 16 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 17 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 18 C 0.07 3.36 4.77 86.31 0.41 3.78 16 19 N -0.83 -34.75 8.23 -186.73 -1.54 -36.29 16 20 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.05 2.21 5.94 -2.39 -0.01 2.20 16 22 H 0.05 2.48 5.96 -2.38 -0.01 2.47 16 23 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 24 H 0.02 0.77 7.27 -2.39 -0.02 0.76 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.08 1.93 8.09 -2.39 -0.02 1.91 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.37 8.09 -2.38 -0.02 2.35 16 29 H 0.02 0.72 6.43 -2.39 -0.02 0.71 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 2.13 6.97 -2.39 -0.02 2.12 16 32 H 0.25 12.64 8.31 -92.71 -0.77 11.87 16 33 H 0.11 5.40 3.90 -2.39 -0.01 5.39 16 34 H -0.03 -1.43 8.14 -2.39 -0.02 -1.45 16 35 H 0.32 12.36 9.08 -89.69 -0.81 11.55 16 36 H 0.32 12.43 7.57 -89.69 -0.68 11.75 16 Total: -1.00 -53.61 260.56 -0.72 -54.33 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.42 Total: 20.67 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 3.58 Total: -15.62 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -5.90 Total: -105.28 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -53.61 -0.72 -54.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.080 kcal (2) G-P(sol) polarization free energy of solvation -53.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds