Wall clock time and date at job start Mon Mar 30 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.49874 * 2 1 4 4 C 1.53036 * 109.50441 * 239.91517 * 2 1 3 5 5 N 1.46846 * 109.52440 * 180.83979 * 4 2 1 6 6 C 1.46894 * 111.00255 * 185.84354 * 5 4 2 7 7 C 1.46844 * 111.19634 * 61.74242 * 5 4 2 8 8 C 1.53040 * 109.51949 * 298.26873 * 7 5 4 9 9 C 1.53091 * 109.29283 * 59.17875 * 8 7 5 10 10 C 1.50699 * 109.57732 * 62.27721 * 9 8 7 11 11 H 1.08001 * 119.99861 * 335.88131 * 10 9 8 12 12 C 1.37879 * 120.00439 * 155.88377 * 10 9 8 13 13 N 1.31514 * 119.99509 * 355.33762 * 12 10 9 14 14 Si 1.86799 * 120.00293 * 175.33575 * 12 10 9 15 15 H 1.48503 * 109.47119 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46697 * 120.00061 * 14 12 10 17 17 H 1.48497 * 109.47230 * 239.99937 * 14 12 10 18 18 C 1.52999 * 109.53020 * 182.43837 * 9 8 7 19 19 N 1.46896 * 109.46931 * 293.16208 * 18 9 8 20 20 H 1.08996 * 109.47018 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46807 * 300.08231 * 1 2 3 22 22 H 1.08996 * 109.46753 * 60.08148 * 1 2 3 23 23 H 1.09002 * 109.46105 * 60.82607 * 4 2 1 24 24 H 1.08993 * 109.46435 * 300.86051 * 4 2 1 25 25 H 1.08997 * 109.46963 * 299.74351 * 6 5 4 26 26 H 1.09000 * 109.47180 * 59.74020 * 6 5 4 27 27 H 1.08994 * 109.47331 * 179.74578 * 6 5 4 28 28 H 1.09002 * 109.45997 * 58.27590 * 7 5 4 29 29 H 1.08995 * 109.46699 * 178.25251 * 7 5 4 30 30 H 1.08994 * 109.50376 * 179.11873 * 8 7 5 31 31 H 1.09008 * 109.49977 * 299.23227 * 8 7 5 32 32 H 0.97004 * 119.99822 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.46335 * 53.15823 * 18 9 8 34 34 H 1.08992 * 109.47051 * 173.15763 * 18 9 8 35 35 H 1.00904 * 111.00135 * 61.12808 * 19 18 9 36 36 H 1.00902 * 110.99971 * 185.08000 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7231 -1.2482 5 7 3.5094 -0.7410 -1.2385 6 6 4.0373 -1.3043 -2.4882 7 6 4.0238 -1.4716 -0.0732 8 6 3.5718 -0.7708 1.2100 9 6 2.0421 -0.7236 1.2486 10 6 1.4941 -2.1271 1.2774 11 1 2.0829 -2.9448 0.8887 12 6 0.2410 -2.3675 1.8000 13 7 -0.4382 -1.3883 2.3563 14 14 -0.4919 -4.0837 1.7179 15 1 0.4663 -4.9996 1.0483 16 1 -0.7638 -4.5721 3.0937 17 1 -1.7604 -4.0439 0.9470 18 6 1.5850 0.0295 2.4995 19 7 1.9412 -0.7459 3.6953 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5151 0.8893 22 1 -0.3633 0.5126 -0.8907 23 1 1.6901 -0.2021 -2.1390 24 1 1.6654 -1.7463 -1.2545 25 1 3.6799 -2.3273 -2.6051 26 1 3.6969 -0.7020 -3.3306 27 1 5.1268 -1.3015 -2.4563 28 1 3.6389 -2.4913 -0.0851 29 1 5.1129 -1.4941 -0.1104 30 1 3.9406 -1.3221 2.0749 31 1 3.9678 0.2446 1.2290 32 1 -1.3200 -1.5573 2.7237 33 1 2.0757 1.0020 2.5376 34 1 0.5045 0.1687 2.4653 35 1 2.9401 -0.8728 3.7596 36 1 1.5775 -0.3109 4.5299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:25 Heat of formation + Delta-G solvation = 16.980615 kcal Electronic energy + Delta-G solvation = -15876.225417 eV Core-core repulsion = 13588.648826 eV Total energy + Delta-G solvation = -2287.576591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.73463 -35.15744 -31.92023 -31.34970 -30.41454 -26.44584 -25.82688 -24.38447 -23.08108 -20.56741 -20.05669 -18.38674 -15.42471 -15.00899 -14.75123 -14.37893 -13.99860 -13.70783 -13.22655 -12.90650 -12.67960 -12.08545 -11.59092 -11.52157 -11.15439 -11.00021 -10.88143 -10.71166 -10.48832 -10.34538 -10.24233 -9.76329 -9.57289 -9.03065 -8.67682 -8.41963 -8.05331 -7.49590 -6.97389 -5.53466 -3.76982 3.38736 3.47818 3.50477 4.58175 4.73132 5.49957 5.67040 5.82247 5.90226 6.05294 6.14750 6.19659 6.27937 6.36889 6.44396 6.55596 6.71208 6.81786 6.85323 6.97121 7.01763 7.07088 7.31632 7.39213 7.49724 7.65313 7.80072 7.87708 7.97319 8.06564 8.42939 8.56572 8.82168 9.00419 9.21123 9.87068 11.26860 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028515 B = 0.014447 C = 0.012732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.711749 B = 1937.666637 C = 2198.678776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 H 0.035 0.965 4 C 0.073 3.927 5 N -0.546 5.546 6 C 0.028 3.972 7 C 0.066 3.934 8 C -0.101 4.101 9 C 0.073 3.927 10 C -0.480 4.480 11 H 0.045 0.955 12 C 0.088 3.912 13 N -0.867 5.867 14 Si 0.879 3.121 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.290 1.290 18 C 0.073 3.927 19 N -0.807 5.807 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.004 0.996 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.247 0.753 33 H -0.048 1.048 34 H 0.138 0.862 35 H 0.305 0.695 36 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 1.890 -3.691 5.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.087 4.087 3 H 0.053 0.947 4 C -0.055 4.055 5 N -0.271 5.271 6 C -0.121 4.121 7 C -0.062 4.062 8 C -0.139 4.139 9 C 0.073 3.927 10 C -0.518 4.518 11 H 0.063 0.937 12 C -0.113 4.113 13 N -0.506 5.506 14 Si 0.708 3.292 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.217 1.217 18 C -0.057 4.057 19 N -0.332 5.332 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.023 0.977 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.059 0.941 33 H -0.030 1.030 34 H 0.155 0.845 35 H 0.116 0.884 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.874 1.800 -3.905 5.787 hybrid contribution -0.030 -0.989 0.182 1.006 sum 3.844 0.810 -3.723 5.412 Atomic orbital electron populations 1.21736 0.94927 1.02770 0.98119 1.21157 0.95645 0.96433 0.95429 0.94680 1.22043 0.85486 0.99946 0.97992 1.61988 1.09696 1.53658 1.01745 1.22277 0.99591 0.97243 0.93023 1.21994 0.96914 0.96307 0.90994 1.21645 0.99786 0.97606 0.94883 1.18262 0.88657 0.95413 0.90393 1.20721 1.00332 0.91673 1.39094 0.93677 1.24626 0.97200 0.95279 0.94159 1.69766 1.11967 1.29688 1.39208 0.86780 0.78838 0.86237 0.77326 1.20575 1.21422 1.21669 1.22493 1.05197 0.88316 0.89702 1.58451 1.14751 1.56237 1.03780 0.91211 0.91809 0.97662 0.93501 0.93936 0.96356 0.92302 0.92446 0.94245 0.93454 0.92751 0.94624 0.94110 1.03021 0.84482 0.88424 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 7.58 37.16 0.28 -2.36 16 2 C -0.07 -1.48 2.16 -90.53 -0.20 -1.68 16 3 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.07 1.50 4.54 -3.83 -0.02 1.48 16 5 N -0.55 -10.56 4.91 -242.97 -1.19 -11.75 16 6 C 0.03 0.44 9.59 60.06 0.58 1.01 16 7 C 0.07 1.30 5.26 -3.83 -0.02 1.28 16 8 C -0.10 -2.15 4.61 -26.66 -0.12 -2.27 16 9 C 0.07 1.70 0.33 -155.55 -0.05 1.65 16 10 C -0.48 -12.22 5.68 -34.44 -0.20 -12.41 16 11 H 0.05 1.21 6.25 -52.49 -0.33 0.88 16 12 C 0.09 2.27 3.47 -17.82 -0.06 2.21 16 13 N -0.87 -22.32 7.50 55.43 0.42 -21.91 16 14 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 C 0.07 1.71 4.74 -3.83 -0.02 1.69 16 19 N -0.81 -17.88 8.29 -10.37 -0.09 -17.97 16 20 H 0.07 1.71 5.74 -51.93 -0.30 1.41 16 21 H 0.06 1.49 5.92 -51.93 -0.31 1.18 16 22 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 23 H 0.05 0.90 8.12 -51.93 -0.42 0.47 16 24 H 0.04 0.96 7.31 -51.93 -0.38 0.58 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.04 0.85 6.45 -51.93 -0.33 0.51 16 29 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.05 1.15 6.97 -51.93 -0.36 0.79 16 31 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 33 H -0.05 -1.11 8.14 -51.93 -0.42 -1.53 16 34 H 0.14 3.50 3.74 -51.94 -0.19 3.30 16 35 H 0.31 6.31 7.57 -39.29 -0.30 6.01 16 36 H 0.31 6.33 9.08 -39.29 -0.36 5.97 16 LS Contribution 260.02 15.07 3.92 3.92 Total: -1.00 -26.09 260.02 -7.58 -33.67 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.79 Total: 7.32 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 0.17 Total: -9.40 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.86 Total: -51.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.09 -7.58 -33.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.649 kcal (2) G-P(sol) polarization free energy of solvation -26.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds