Wall clock time and date at job start Mon Mar 30 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46854 * 2 1 4 4 N 1.46899 * 109.47338 * 119.99997 * 2 1 3 5 5 C 1.46901 * 110.99810 * 56.04670 * 4 2 1 6 6 C 1.53241 * 109.34079 * 172.74316 * 5 4 2 7 7 N 1.47079 * 108.51712 * 53.83382 * 6 5 4 8 8 C 1.36936 * 120.88352 * 128.82010 * 7 6 5 9 9 H 1.07996 * 120.00066 * 208.82943 * 8 7 6 10 10 C 1.38804 * 119.99805 * 28.82097 * 8 7 6 11 11 N 1.31618 * 120.00069 * 24.11840 * 10 8 7 12 12 Si 1.86803 * 120.00055 * 204.10943 * 10 8 7 13 13 H 1.48502 * 109.47228 * 180.02562 * 12 10 8 14 14 H 1.48496 * 109.47111 * 300.00362 * 12 10 8 15 15 H 1.48501 * 109.46942 * 60.00391 * 12 10 8 16 16 C 1.47079 * 118.23630 * 309.08600 * 7 6 5 17 17 H 1.09005 * 109.63115 * 291.20405 * 16 7 6 18 18 C 1.53005 * 109.63070 * 170.62241 * 16 7 6 19 19 C 1.46896 * 110.99955 * 291.74737 * 4 2 1 20 20 H 1.08995 * 109.47366 * 299.99505 * 1 2 3 21 21 H 1.08996 * 109.47074 * 59.99809 * 1 2 3 22 22 H 1.09004 * 109.46627 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47315 * 240.00417 * 2 1 3 24 24 H 1.09001 * 109.46894 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47436 * 299.99969 * 3 2 1 26 26 H 1.09003 * 109.47321 * 59.99975 * 3 2 1 27 27 H 1.09004 * 109.49105 * 52.78929 * 5 4 2 28 28 H 1.08999 * 109.51710 * 292.72202 * 5 4 2 29 29 H 1.08996 * 109.62707 * 294.12819 * 6 5 4 30 30 H 1.08995 * 109.62774 * 173.53769 * 6 5 4 31 31 H 0.97001 * 119.99970 * 5.84487 * 11 10 8 32 32 H 1.09003 * 109.46995 * 59.99820 * 18 16 7 33 33 H 1.08999 * 109.47369 * 179.97438 * 18 16 7 34 34 H 1.09000 * 109.47178 * 300.00407 * 18 16 7 35 35 H 1.08995 * 109.49568 * 307.21243 * 19 4 2 36 36 H 1.08999 * 109.49293 * 67.26666 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4731 -2.0535 1.2815 6 6 2.1441 -2.8010 2.4388 7 7 1.9974 -1.9970 3.6617 8 6 1.5019 -2.5510 4.8118 9 1 0.9706 -1.9352 5.5224 10 6 1.6824 -3.9039 5.0642 11 7 2.6814 -4.5507 4.5022 12 14 0.5075 -4.8066 6.2019 13 1 0.9151 -6.2308 6.3055 14 1 0.5448 -4.1823 7.5487 15 1 -0.8711 -4.7244 5.6561 16 6 2.3914 -0.5808 3.6148 17 1 3.4737 -0.5051 3.5098 18 6 1.9455 0.1197 4.9000 19 6 1.7162 0.0778 2.4128 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6671 -2.5804 0.3472 28 1 0.3981 -2.0043 1.4549 29 1 3.2021 -2.9427 2.2186 30 1 1.6630 -3.7691 2.5773 31 1 3.3403 -4.0664 3.9803 32 1 2.4181 -0.3593 5.7575 33 1 2.2392 1.1687 4.8627 34 1 0.8621 0.0484 4.9955 35 1 2.0864 1.0966 2.2990 36 1 0.6379 0.0981 2.5705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261030163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:36 Heat of formation + Delta-G solvation = 23.890324 kcal Electronic energy + Delta-G solvation = -15373.013647 eV Core-core repulsion = 13085.736684 eV Total energy + Delta-G solvation = -2287.276963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.91866 -35.72721 -32.49669 -31.67923 -29.48334 -27.39502 -26.36106 -25.56426 -23.04246 -21.39637 -20.01374 -18.67526 -16.84397 -15.64994 -14.99616 -14.42652 -14.11888 -13.79934 -13.54798 -13.39297 -13.07162 -12.65147 -12.03298 -11.89439 -11.67640 -11.19792 -11.07918 -10.98717 -10.75779 -10.66766 -10.56828 -10.17751 -10.03973 -9.93897 -9.85339 -9.09428 -8.33727 -7.76213 -6.77036 -5.97110 -3.15154 3.51965 3.54969 3.73205 4.36987 4.64495 5.06507 5.22417 5.24721 5.45628 5.48131 5.66737 5.73936 5.78053 5.85058 6.02402 6.06301 6.10812 6.13138 6.16137 6.27996 6.31181 6.39116 6.41765 6.46930 6.66719 6.89761 6.98366 7.12730 7.25992 7.67097 7.69712 8.09454 8.65414 9.20141 9.93382 10.41053 11.30042 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043535 B = 0.009473 C = 0.008827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.009539 B = 2955.177944 C = 3171.339193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 C -0.146 4.146 4 N -0.528 5.528 5 C 0.039 3.961 6 C 0.158 3.842 7 N -0.597 5.597 8 C -0.345 4.345 9 H 0.059 0.941 10 C -0.026 4.026 11 N -0.919 5.919 12 Si 1.063 2.937 13 H -0.286 1.286 14 H -0.294 1.294 15 H -0.295 1.295 16 C 0.172 3.828 17 H 0.028 0.972 18 C -0.134 4.134 19 C 0.043 3.957 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.023 0.977 30 H 0.077 0.923 31 H 0.269 0.731 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 9.193 -7.007 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.036 4.036 3 C -0.203 4.203 4 N -0.252 5.252 5 C -0.090 4.090 6 C 0.032 3.968 7 N -0.322 5.322 8 C -0.474 4.474 9 H 0.077 0.923 10 C -0.228 4.228 11 N -0.559 5.559 12 Si 0.893 3.107 13 H -0.211 1.211 14 H -0.221 1.221 15 H -0.223 1.223 16 C 0.065 3.935 17 H 0.046 0.954 18 C -0.192 4.192 19 C -0.086 4.086 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.880 7.644 -6.380 10.364 hybrid contribution -0.570 1.615 -0.617 1.820 sum -3.449 9.258 -6.997 12.107 Atomic orbital electron populations 1.22463 0.98178 1.02085 1.01571 1.21719 0.92383 0.95033 0.94452 1.21919 1.01715 0.95438 1.01263 1.62193 1.58721 1.02671 1.01642 1.22737 0.97320 0.89112 0.99829 1.21005 0.97069 0.94569 0.84147 1.44233 1.75005 1.05338 1.07642 1.19954 1.32156 0.95573 0.99689 0.92289 1.25811 0.99754 0.95494 1.01766 1.70758 1.10596 1.39809 1.34764 0.83555 0.75437 0.76360 0.75359 1.21146 1.22084 1.22256 1.20400 0.95666 0.85797 0.91604 0.95421 1.21767 1.01298 0.97479 0.98656 1.22658 0.98312 0.96656 0.90971 0.92665 0.92830 0.92363 0.90617 0.92008 0.92821 0.92428 0.92204 0.95031 0.95901 0.90445 0.91959 0.91846 0.94297 0.93012 0.91512 0.95313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.48 37.16 0.32 -2.23 16 2 C 0.07 1.07 3.09 -67.71 -0.21 0.86 16 3 C -0.15 -1.83 8.70 37.16 0.32 -1.51 16 4 N -0.53 -9.66 4.68 -226.63 -1.06 -10.72 16 5 C 0.04 0.78 4.86 -3.70 -0.02 0.77 16 6 C 0.16 3.84 4.86 -3.60 -0.02 3.82 16 7 N -0.60 -15.24 2.88 -164.75 -0.47 -15.71 16 8 C -0.34 -9.59 8.56 -15.06 -0.13 -9.72 16 9 H 0.06 1.63 6.29 -52.49 -0.33 1.30 16 10 C -0.03 -0.75 4.71 -17.43 -0.08 -0.83 16 11 N -0.92 -27.85 12.50 55.49 0.69 -27.15 16 12 Si 1.06 25.52 29.98 -169.99 -5.10 20.42 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 16 C 0.17 3.76 3.64 -67.72 -0.25 3.51 16 17 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 18 C -0.13 -2.65 7.94 37.16 0.29 -2.35 16 19 C 0.04 0.81 4.09 -3.94 -0.02 0.79 16 20 H 0.05 0.81 6.79 -51.93 -0.35 0.46 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.86 6.51 -51.93 -0.34 0.52 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.73 6.16 -51.93 -0.32 0.41 16 27 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 28 H 0.03 0.65 6.68 -51.93 -0.35 0.31 16 29 H 0.02 0.58 7.76 -51.93 -0.40 0.18 16 30 H 0.08 2.07 6.53 -51.93 -0.34 1.73 16 31 H 0.27 8.28 6.64 -40.82 -0.27 8.01 16 32 H 0.06 1.35 7.54 -51.93 -0.39 0.96 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 1.04 7.58 -51.93 -0.39 0.65 16 35 H 0.07 1.10 5.76 -51.93 -0.30 0.80 16 36 H 0.03 0.56 6.89 -51.93 -0.36 0.21 16 LS Contribution 268.38 15.07 4.04 4.04 Total: -1.00 -29.86 268.38 -7.58 -37.44 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.90 Total: -1.41 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 0.22 Total: -6.90 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.84 Total: -53.59 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.10 Total: 20.42 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.86 -7.58 -37.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.327 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds