Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46705 * 2 1 4 4 C 1.50692 * 109.47463 * 239.99692 * 2 1 3 5 5 H 1.07998 * 120.00222 * 245.46627 * 4 2 1 6 6 C 1.37883 * 119.99928 * 65.45696 * 4 2 1 7 7 N 1.31516 * 119.99857 * 9.72699 * 6 4 2 8 8 Si 1.86801 * 119.99798 * 189.72106 * 6 4 2 9 9 H 1.48495 * 109.47416 * 84.99891 * 8 6 4 10 10 H 1.48505 * 109.46865 * 204.99837 * 8 6 4 11 11 H 1.48502 * 109.47426 * 324.99413 * 8 6 4 12 12 N 1.46896 * 109.46887 * 119.99420 * 2 1 3 13 13 C 1.46954 * 111.00204 * 58.80131 * 12 2 1 14 14 C 1.53056 * 109.36735 * 176.80855 * 13 12 2 15 15 N 1.46953 * 109.36215 * 58.40255 * 14 13 12 16 16 C 1.46903 * 110.99849 * 176.81243 * 15 14 13 17 17 C 1.46958 * 110.88247 * 300.67965 * 15 14 13 18 18 C 1.46961 * 111.00462 * 294.99921 * 12 2 1 19 19 H 1.09004 * 109.48369 * 63.20074 * 18 12 2 20 20 C 1.52994 * 109.49058 * 303.16231 * 18 12 2 21 21 H 1.08999 * 109.46817 * 61.96242 * 1 2 3 22 22 H 1.08997 * 109.46871 * 181.95558 * 1 2 3 23 23 H 1.09001 * 109.46921 * 301.95900 * 1 2 3 24 24 H 0.96997 * 119.99716 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.49288 * 296.78084 * 13 12 2 26 26 H 1.09009 * 109.48868 * 56.84436 * 13 12 2 27 27 H 1.08999 * 109.48656 * 298.43457 * 14 13 12 28 28 H 1.09002 * 109.48916 * 178.37319 * 14 13 12 29 29 H 1.09000 * 109.46834 * 183.80207 * 16 15 14 30 30 H 1.09001 * 109.46932 * 303.80140 * 16 15 14 31 31 H 1.09003 * 109.46991 * 63.80161 * 16 15 14 32 32 H 1.08999 * 109.48956 * 299.35665 * 17 15 14 33 33 H 1.09000 * 109.50580 * 179.29969 * 17 15 14 34 34 H 1.09006 * 109.47352 * 59.99127 * 20 18 12 35 35 H 1.09002 * 109.47413 * 179.97438 * 20 18 12 36 36 H 1.09000 * 109.46859 * 299.99564 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.5786 -1.6371 -1.1337 6 6 1.7947 -0.1775 -2.4796 7 7 1.3024 1.0367 -2.5936 8 14 2.1719 -1.1800 -4.0099 9 1 1.0174 -2.0602 -4.3222 10 1 2.4198 -0.2645 -5.1527 11 1 3.3786 -2.0121 -3.7716 12 7 2.0197 -0.6924 1.1995 13 6 1.5252 -2.0754 1.2480 14 6 2.1202 -2.7846 2.4669 15 7 1.7490 -2.0526 3.6858 16 6 2.2387 -2.7450 4.8854 17 6 2.2435 -0.6696 3.6374 18 6 1.6486 0.0396 2.4186 19 1 0.5627 0.0690 2.5087 20 6 2.1932 1.4673 2.3425 21 1 -0.3633 0.4831 -0.9071 22 1 -0.3633 -1.0270 0.0351 23 1 -0.3633 0.5440 0.8719 24 1 1.1347 1.4115 -3.4724 25 1 0.4379 -2.0704 1.3250 26 1 1.8234 -2.6003 0.3404 27 1 3.2060 -2.8137 2.3765 28 1 1.7321 -3.8018 2.5210 29 1 1.8929 -2.2189 5.7751 30 1 1.8579 -3.7663 4.8962 31 1 3.3285 -2.7636 4.8747 32 1 3.3307 -0.6746 3.5603 33 1 1.9456 -0.1445 4.5450 34 1 1.7708 1.9715 1.4732 35 1 1.9175 2.0102 3.2466 36 1 3.2791 1.4376 2.2531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = 11.891454 kcal Electronic energy + Delta-G solvation = -15255.949961 eV Core-core repulsion = 12968.152687 eV Total energy + Delta-G solvation = -2287.797273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.01289 -35.66202 -32.84365 -31.66598 -29.55273 -26.60133 -26.52599 -25.14785 -23.35899 -21.48455 -20.48005 -18.30020 -16.23860 -15.56479 -14.90564 -14.56832 -14.48331 -14.20175 -13.70555 -12.92406 -12.73830 -12.16649 -12.04628 -11.95795 -11.45591 -11.44236 -11.15247 -10.97609 -10.74773 -10.69163 -10.48299 -10.31281 -10.21136 -9.92436 -9.34784 -8.86310 -8.27301 -8.05912 -7.06965 -6.00744 -3.99509 3.32988 3.39353 3.42207 4.25823 4.44192 4.95852 5.29006 5.33545 5.37531 5.58911 5.62602 5.80735 5.86926 5.91443 5.96192 6.00739 6.11930 6.17388 6.43124 6.53409 6.65536 6.72290 6.80938 6.85191 6.87265 7.15128 7.32426 7.34754 7.55179 7.66911 7.87567 8.18224 8.41597 8.67012 9.05558 9.63452 11.09167 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042572 B = 0.009271 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.544030 B = 3019.366650 C = 3412.152716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.207 3.793 3 H 0.054 0.946 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.527 5.527 13 C 0.063 3.937 14 C 0.056 3.944 15 N -0.547 5.547 16 C 0.027 3.973 17 C 0.066 3.934 18 C 0.079 3.921 19 H 0.041 0.959 20 C -0.143 4.143 21 H 0.068 0.932 22 H 0.031 0.969 23 H 0.013 0.987 24 H 0.260 0.740 25 H 0.034 0.966 26 H 0.086 0.914 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -3.918 10.625 11.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.101 3.899 3 H 0.072 0.928 4 C -0.541 4.541 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.252 5.252 13 C -0.066 4.066 14 C -0.072 4.072 15 N -0.271 5.271 16 C -0.122 4.122 17 C -0.063 4.063 18 C -0.030 4.030 19 H 0.059 0.941 20 C -0.201 4.201 21 H 0.087 0.913 22 H 0.050 0.950 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.744 -3.782 10.485 11.171 hybrid contribution 0.096 -0.516 -0.886 1.030 sum 0.840 -4.298 9.599 10.551 Atomic orbital electron populations 1.22339 1.01416 0.98920 0.99850 1.19376 0.89173 0.95575 0.85823 0.92819 1.21093 1.34950 1.08126 0.89904 0.92087 1.24912 0.95535 0.94676 0.98905 1.69964 1.45548 1.13905 1.23674 0.86631 0.78636 0.80110 0.82749 1.20736 1.21410 1.19968 1.62527 1.59293 1.01288 1.02137 1.22028 0.97168 0.90986 0.96390 1.22273 0.98472 0.96693 0.89755 1.62156 1.59725 1.02781 1.02473 1.22314 0.97473 0.99118 0.93261 1.22204 0.97567 0.88439 0.98056 1.21546 0.97463 0.93440 0.90549 0.94116 1.21830 1.01676 0.95299 1.01258 0.91334 0.94956 0.96809 0.93033 0.94828 0.89573 0.94537 0.91397 0.91893 0.91822 0.96040 0.94484 0.91499 0.91334 0.93532 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.36 37.16 0.31 -3.70 16 2 C 0.21 5.17 1.88 -68.87 -0.13 5.04 16 3 H 0.05 1.47 5.92 -51.93 -0.31 1.17 16 4 C -0.50 -13.72 7.94 -34.44 -0.27 -13.99 16 5 H 0.06 1.67 6.58 -52.49 -0.35 1.32 16 6 C 0.06 1.69 5.18 -17.82 -0.09 1.60 16 7 N -0.89 -25.60 12.17 55.43 0.67 -24.92 16 8 Si 0.89 21.37 29.55 -169.99 -5.02 16.35 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.53 -11.48 4.51 -219.94 -0.99 -12.47 16 13 C 0.06 1.26 4.86 -3.77 -0.02 1.25 16 14 C 0.06 0.94 5.62 -3.77 -0.02 0.92 16 15 N -0.55 -8.76 4.97 -242.75 -1.21 -9.96 16 16 C 0.03 0.34 9.60 60.07 0.58 0.91 16 17 C 0.07 1.07 4.90 -3.77 -0.02 1.05 16 18 C 0.08 1.50 2.19 -67.66 -0.15 1.35 16 19 H 0.04 0.82 6.64 -51.93 -0.34 0.48 16 20 C -0.14 -2.51 8.87 37.15 0.33 -2.18 16 21 H 0.07 1.81 6.87 -51.93 -0.36 1.45 16 22 H 0.03 0.75 6.35 -51.93 -0.33 0.42 16 23 H 0.01 0.29 6.69 -51.93 -0.35 -0.05 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.03 0.70 6.42 -51.93 -0.33 0.37 16 26 H 0.09 1.84 6.35 -51.92 -0.33 1.51 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.35 6.25 -51.93 -0.32 1.02 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 271.56 15.07 4.09 4.09 Total: -1.00 -28.40 271.56 -7.89 -36.29 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.96 Total: -1.62 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 0.52 Total: -7.75 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -1.52 Total: -47.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.40 -7.89 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.182 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds