Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46705 * 2 1 4 4 C 1.50692 * 109.47463 * 239.99692 * 2 1 3 5 5 H 1.07998 * 120.00222 * 245.46627 * 4 2 1 6 6 C 1.37883 * 119.99928 * 65.45696 * 4 2 1 7 7 N 1.31516 * 119.99857 * 9.72699 * 6 4 2 8 8 Si 1.86801 * 119.99798 * 189.72106 * 6 4 2 9 9 H 1.48495 * 109.47416 * 84.99891 * 8 6 4 10 10 H 1.48505 * 109.46865 * 204.99837 * 8 6 4 11 11 H 1.48502 * 109.47426 * 324.99413 * 8 6 4 12 12 N 1.46896 * 109.46887 * 119.99420 * 2 1 3 13 13 C 1.46954 * 111.00204 * 58.80131 * 12 2 1 14 14 C 1.53056 * 109.36735 * 176.80855 * 13 12 2 15 15 N 1.46953 * 109.36215 * 58.40255 * 14 13 12 16 16 C 1.46903 * 110.99849 * 176.81243 * 15 14 13 17 17 C 1.46958 * 110.88247 * 300.67965 * 15 14 13 18 18 C 1.46961 * 111.00462 * 294.99921 * 12 2 1 19 19 H 1.09004 * 109.48369 * 63.20074 * 18 12 2 20 20 C 1.52994 * 109.49058 * 303.16231 * 18 12 2 21 21 H 1.08999 * 109.46817 * 61.96242 * 1 2 3 22 22 H 1.08997 * 109.46871 * 181.95558 * 1 2 3 23 23 H 1.09001 * 109.46921 * 301.95900 * 1 2 3 24 24 H 0.96997 * 119.99716 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.49288 * 296.78084 * 13 12 2 26 26 H 1.09009 * 109.48868 * 56.84436 * 13 12 2 27 27 H 1.08999 * 109.48656 * 298.43457 * 14 13 12 28 28 H 1.09002 * 109.48916 * 178.37319 * 14 13 12 29 29 H 1.09000 * 109.46834 * 183.80207 * 16 15 14 30 30 H 1.09001 * 109.46932 * 303.80140 * 16 15 14 31 31 H 1.09003 * 109.46991 * 63.80161 * 16 15 14 32 32 H 1.08999 * 109.48956 * 299.35665 * 17 15 14 33 33 H 1.09000 * 109.50580 * 179.29969 * 17 15 14 34 34 H 1.09006 * 109.47352 * 59.99127 * 20 18 12 35 35 H 1.09002 * 109.47413 * 179.97438 * 20 18 12 36 36 H 1.09000 * 109.46859 * 299.99564 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.5786 -1.6371 -1.1337 6 6 1.7947 -0.1775 -2.4796 7 7 1.3024 1.0367 -2.5936 8 14 2.1719 -1.1800 -4.0099 9 1 1.0174 -2.0602 -4.3222 10 1 2.4198 -0.2645 -5.1527 11 1 3.3786 -2.0121 -3.7716 12 7 2.0197 -0.6924 1.1995 13 6 1.5252 -2.0754 1.2480 14 6 2.1202 -2.7846 2.4669 15 7 1.7490 -2.0526 3.6858 16 6 2.2387 -2.7450 4.8854 17 6 2.2435 -0.6696 3.6374 18 6 1.6486 0.0396 2.4186 19 1 0.5627 0.0690 2.5087 20 6 2.1932 1.4673 2.3425 21 1 -0.3633 0.4831 -0.9071 22 1 -0.3633 -1.0270 0.0351 23 1 -0.3633 0.5440 0.8719 24 1 1.1347 1.4115 -3.4724 25 1 0.4379 -2.0704 1.3250 26 1 1.8234 -2.6003 0.3404 27 1 3.2060 -2.8137 2.3765 28 1 1.7321 -3.8018 2.5210 29 1 1.8929 -2.2189 5.7751 30 1 1.8579 -3.7663 4.8962 31 1 3.3285 -2.7636 4.8747 32 1 3.3307 -0.6746 3.5603 33 1 1.9456 -0.1445 4.5450 34 1 1.7708 1.9715 1.4732 35 1 1.9175 2.0102 3.2466 36 1 3.2791 1.4376 2.2531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261071628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = -8.138949 kcal Electronic energy + Delta-G solvation = -15256.818544 eV Core-core repulsion = 12968.152687 eV Total energy + Delta-G solvation = -2288.665857 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52715 -37.20100 -34.71658 -33.26677 -31.28099 -28.16826 -27.80786 -27.25019 -24.77964 -23.06518 -22.07005 -19.92793 -18.26100 -17.19201 -16.41062 -16.16169 -16.07110 -15.46542 -15.37798 -14.54372 -14.43976 -13.95992 -13.34093 -13.23833 -13.20574 -12.89262 -12.76163 -12.68512 -12.49192 -12.38486 -12.23002 -12.05918 -11.85207 -11.63733 -11.03012 -10.88042 -10.38229 -9.28814 -8.80958 -8.12757 -6.18077 1.42070 1.42810 1.52234 2.43632 3.05100 3.18035 3.35653 3.98847 4.14460 4.20554 4.41601 4.46059 4.55748 4.64025 4.67233 4.73381 4.82661 4.83475 4.86892 4.98119 5.01816 5.03313 5.09208 5.16817 5.28306 5.37571 5.55569 5.70804 5.75472 6.07774 6.17052 6.22107 6.55817 6.81255 6.95279 7.49072 8.96707 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042572 B = 0.009271 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.544030 B = 3019.366650 C = 3412.152716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.213 3.787 3 H 0.025 0.975 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.537 5.537 13 C 0.065 3.935 14 C 0.066 3.934 15 N -0.559 5.559 16 C 0.028 3.972 17 C 0.073 3.927 18 C 0.076 3.924 19 H 0.028 0.972 20 C -0.136 4.136 21 H 0.041 0.959 22 H 0.033 0.967 23 H 0.026 0.974 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -5.028 12.080 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.105 3.895 3 H 0.043 0.957 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.262 5.262 13 C -0.064 4.064 14 C -0.063 4.063 15 N -0.283 5.283 16 C -0.120 4.120 17 C -0.055 4.055 18 C -0.033 4.033 19 H 0.046 0.954 20 C -0.194 4.194 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.057 -4.906 11.964 12.974 hybrid contribution -0.004 -0.157 -1.276 1.286 sum 1.053 -5.063 10.688 11.874 Atomic orbital electron populations 1.22132 1.01025 0.98744 0.99021 1.19103 0.89283 0.94163 0.86905 0.95727 1.21381 1.34905 1.08020 0.91182 0.92636 1.25664 0.95514 0.95545 1.01777 1.70081 1.46515 1.15220 1.24283 0.85644 0.78636 0.78685 0.79127 1.20111 1.21107 1.19411 1.62455 1.59449 1.02135 1.02180 1.21993 0.96621 0.90232 0.97545 1.22144 0.97901 0.97366 0.88839 1.62157 1.60221 1.02758 1.03201 1.22394 0.97821 0.99743 0.92025 1.22133 0.97051 0.88877 0.97465 1.21673 0.96981 0.94169 0.90466 0.95362 1.21768 1.01155 0.94838 1.01656 0.94004 0.94803 0.95460 0.93024 0.95901 0.91476 0.95011 0.89116 0.90199 0.90445 0.95583 0.94859 0.88832 0.94184 0.90101 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.39 8.36 71.98 0.60 -6.79 16 2 C 0.21 10.89 1.88 44.17 0.08 10.98 16 3 H 0.02 1.41 5.92 -2.39 -0.01 1.40 16 4 C -0.52 -28.74 7.94 25.60 0.20 -28.54 16 5 H 0.06 3.09 6.58 -2.91 -0.02 3.07 16 6 C 0.01 0.77 5.18 84.66 0.44 1.21 16 7 N -0.92 -53.98 12.17 21.45 0.26 -53.72 16 8 Si 0.95 44.18 29.55 68.60 2.03 46.21 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 N -0.54 -23.46 4.51 -849.77 -3.83 -27.29 16 13 C 0.06 2.58 4.86 86.31 0.42 3.00 16 14 C 0.07 2.08 5.62 86.31 0.49 2.57 16 15 N -0.56 -16.30 4.97 -921.92 -4.58 -20.88 16 16 C 0.03 0.59 9.60 127.69 1.23 1.82 16 17 C 0.07 2.19 4.90 86.31 0.42 2.61 16 18 C 0.08 2.80 2.19 44.92 0.10 2.90 16 19 H 0.03 1.12 6.64 -2.39 -0.02 1.10 16 20 C -0.14 -4.71 8.87 71.98 0.64 -4.07 16 21 H 0.04 2.26 6.87 -2.39 -0.02 2.24 16 22 H 0.03 1.61 6.35 -2.39 -0.02 1.59 16 23 H 0.03 1.22 6.69 -2.39 -0.02 1.20 16 24 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.02 0.95 6.42 -2.39 -0.02 0.94 16 26 H 0.07 2.89 6.35 -2.38 -0.02 2.87 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 2.45 8.13 -2.39 -0.02 2.44 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 31 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.60 6.25 -2.38 -0.01 1.58 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.05 271.56 -0.47 -61.52 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.03 Total: 8.49 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 4.62 Total: -14.33 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -8.15 Total: -101.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -61.05 -0.47 -61.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.378 kcal (2) G-P(sol) polarization free energy of solvation -61.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds