Wall clock time and date at job start Mon Mar 30 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47227 * 119.99710 * 2 1 3 5 5 H 1.08004 * 120.00227 * 117.22178 * 4 2 1 6 6 C 1.37874 * 120.00241 * 297.22089 * 4 2 1 7 7 N 1.31517 * 119.99712 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00097 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47058 * 60.00073 * 8 6 4 10 10 H 1.48501 * 109.46899 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47326 * 300.00098 * 8 6 4 12 12 N 1.46906 * 109.47364 * 239.99904 * 2 1 3 13 13 C 1.46954 * 110.99584 * 298.01669 * 12 2 1 14 14 C 1.53055 * 109.36273 * 176.80944 * 13 12 2 15 15 N 1.47002 * 109.37515 * 58.40304 * 14 13 12 16 16 C 1.46898 * 111.02718 * 176.82469 * 15 14 13 17 17 C 1.46963 * 110.85358 * 300.69403 * 15 14 13 18 18 C 1.46952 * 111.00035 * 174.21801 * 12 2 1 19 19 H 1.08999 * 109.50728 * 63.21120 * 18 12 2 20 20 C 1.53002 * 109.48920 * 303.15346 * 18 12 2 21 21 H 1.09004 * 109.47428 * 187.08493 * 1 2 3 22 22 H 1.09003 * 109.47537 * 307.08332 * 1 2 3 23 23 H 1.09001 * 109.47269 * 67.08293 * 1 2 3 24 24 H 0.97002 * 119.99713 * 179.97438 * 7 6 4 25 25 H 1.09005 * 109.49095 * 296.77306 * 13 12 2 26 26 H 1.09002 * 109.49275 * 56.84596 * 13 12 2 27 27 H 1.08998 * 109.48537 * 178.36530 * 14 13 12 28 28 H 1.08996 * 109.48670 * 298.43453 * 14 13 12 29 29 H 1.09007 * 109.46876 * 183.79087 * 16 15 14 30 30 H 1.08994 * 109.46905 * 303.78427 * 16 15 14 31 31 H 1.08993 * 109.47506 * 63.79079 * 16 15 14 32 32 H 1.08996 * 109.48552 * 299.32882 * 17 15 14 33 33 H 1.08994 * 109.48712 * 179.29139 * 17 15 14 34 34 H 1.09002 * 109.47126 * 307.10051 * 20 18 12 35 35 H 1.09000 * 109.46801 * 67.09753 * 20 18 12 36 36 H 1.09000 * 109.46988 * 187.09787 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6157 -1.6139 1.1321 6 6 1.7471 -0.2068 2.4819 7 7 1.0372 0.8938 2.6017 8 14 2.3693 -1.0877 4.0072 9 1 3.8527 -1.1474 3.9739 10 1 1.9311 -0.3491 5.2187 11 1 1.8191 -2.4665 4.0415 12 7 2.0196 -0.6925 -1.1995 13 6 1.5876 -2.0971 -1.2098 14 6 2.0490 -2.7604 -2.5097 15 7 3.5119 -2.6616 -2.6151 16 6 4.0019 -3.3537 -3.8145 17 6 3.9435 -1.2568 -2.6043 18 6 3.4821 -0.5936 -1.3045 19 1 3.9429 -1.0981 -0.4553 20 6 3.8950 0.8797 -1.3086 21 1 -0.3634 -1.0198 0.1268 22 1 -0.3634 0.6197 0.8198 23 1 -0.3634 0.4002 -0.9465 24 1 0.8363 1.2478 3.4822 25 1 2.0267 -2.6190 -0.3595 26 1 0.5006 -2.1437 -1.1437 27 1 1.7548 -3.8099 -2.5067 28 1 1.5884 -2.2556 -3.3589 29 1 5.0914 -3.3227 -3.8323 30 1 3.6683 -4.3912 -3.7971 31 1 3.6099 -2.8609 -4.7041 32 1 3.5045 -0.7350 -3.4547 33 1 5.0304 -1.2098 -2.6707 34 1 3.3382 1.4109 -2.0805 35 1 3.6780 1.3205 -0.3356 36 1 4.9630 0.9570 -1.5125 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071630.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:30 Heat of formation + Delta-G solvation = 9.502471 kcal Electronic energy + Delta-G solvation = -15338.021103 eV Core-core repulsion = 13050.120235 eV Total energy + Delta-G solvation = -2287.900868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.87848 -35.56753 -32.73998 -31.68015 -29.53419 -26.61951 -26.43394 -25.07098 -23.31308 -21.20456 -20.10692 -18.76831 -16.05480 -15.52299 -14.82685 -14.55261 -14.48891 -14.16961 -13.49892 -13.11402 -12.62873 -12.20430 -11.95840 -11.67498 -11.35284 -11.34826 -11.08370 -10.98015 -10.66845 -10.54969 -10.46295 -10.17571 -10.02158 -9.70214 -9.47188 -9.03067 -8.33483 -7.99253 -7.06485 -5.95204 -4.05850 3.31920 3.36484 3.40102 4.31353 4.44578 5.04007 5.31618 5.34778 5.44437 5.64124 5.68721 5.89741 5.94203 5.97030 6.01911 6.08805 6.24165 6.30217 6.46229 6.61743 6.85520 6.93044 6.96719 7.03296 7.06885 7.23872 7.40794 7.43962 7.64081 7.75581 8.02122 8.21822 8.39067 8.49909 9.04337 9.61252 11.06364 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035695 B = 0.009885 C = 0.009602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.239913 B = 2831.901755 C = 2915.495985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.204 3.796 3 H 0.047 0.953 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.535 5.535 13 C 0.062 3.938 14 C 0.057 3.943 15 N -0.545 5.545 16 C 0.027 3.973 17 C 0.064 3.936 18 C 0.090 3.910 19 H 0.053 0.947 20 C -0.138 4.138 21 H 0.027 0.973 22 H 0.074 0.926 23 H 0.014 0.986 24 H 0.261 0.739 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.033 0.967 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -4.228 -9.125 10.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.098 3.902 3 H 0.065 0.935 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.260 5.260 13 C -0.067 4.067 14 C -0.071 4.071 15 N -0.269 5.269 16 C -0.121 4.121 17 C -0.064 4.064 18 C -0.019 4.019 19 H 0.071 0.929 20 C -0.196 4.196 21 H 0.046 0.954 22 H 0.093 0.907 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.490 -4.093 -8.987 10.474 hybrid contribution 0.317 -0.554 0.955 1.149 sum 3.807 -4.647 -8.032 10.030 Atomic orbital electron populations 1.21757 0.98097 0.99720 0.98910 1.19327 0.91938 0.94668 0.84313 0.93505 1.21683 1.33760 1.10654 0.91696 0.92546 1.24898 0.94926 0.94811 0.98790 1.69903 1.38576 1.20766 1.23518 0.86755 0.79291 0.79848 0.82695 1.20372 1.21350 1.20381 1.62717 1.08954 1.12251 1.42100 1.21960 0.99764 0.90029 0.94909 1.22265 0.86671 0.99540 0.98587 1.62138 1.12161 1.14664 1.37965 1.22311 1.00333 0.98694 0.90789 1.22261 0.98932 0.87070 0.98146 1.21375 0.90117 0.95212 0.95219 0.92923 1.21766 0.99000 0.95983 1.02889 0.95401 0.90683 0.96651 0.92958 0.93471 0.90973 0.91518 0.94951 0.91890 0.91888 0.96192 0.94877 0.91546 0.92980 0.91132 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.52 37.15 0.32 -2.76 16 2 C 0.20 5.06 1.99 -68.87 -0.14 4.92 16 3 H 0.05 1.27 6.09 -51.93 -0.32 0.95 16 4 C -0.54 -14.50 7.10 -34.44 -0.24 -14.75 16 5 H 0.06 1.56 5.81 -52.48 -0.30 1.25 16 6 C 0.07 1.87 5.32 -17.82 -0.09 1.77 16 7 N -0.89 -25.19 11.61 55.43 0.64 -24.55 16 8 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 N -0.53 -11.58 4.51 -219.95 -0.99 -12.58 16 13 C 0.06 1.26 4.96 -3.77 -0.02 1.24 16 14 C 0.06 0.97 5.62 -3.74 -0.02 0.95 16 15 N -0.54 -9.06 4.97 -242.72 -1.21 -10.27 16 16 C 0.03 0.35 9.61 60.06 0.58 0.93 16 17 C 0.06 1.09 4.90 -3.76 -0.02 1.07 16 18 C 0.09 1.80 2.28 -67.66 -0.15 1.65 16 19 H 0.05 1.20 6.99 -51.93 -0.36 0.84 16 20 C -0.14 -2.57 8.63 37.16 0.32 -2.24 16 21 H 0.03 0.65 6.75 -51.93 -0.35 0.30 16 22 H 0.07 1.98 6.49 -51.93 -0.34 1.64 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.05 1.07 6.42 -51.93 -0.33 0.73 16 26 H 0.07 1.46 6.35 -51.93 -0.33 1.13 16 27 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.48 6.65 -51.93 -0.35 1.14 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 272.12 15.07 4.10 4.10 Total: -1.00 -27.92 272.12 -7.99 -35.91 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.04 Total: -1.81 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 0.53 Total: -7.22 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -1.55 Total: -47.39 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.92 -7.99 -35.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071630.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.416 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds