Wall clock time and date at job start Mon Mar 30 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47227 * 119.99710 * 2 1 3 5 5 H 1.08004 * 120.00227 * 117.22178 * 4 2 1 6 6 C 1.37874 * 120.00241 * 297.22089 * 4 2 1 7 7 N 1.31517 * 119.99712 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00097 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47058 * 60.00073 * 8 6 4 10 10 H 1.48501 * 109.46899 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47326 * 300.00098 * 8 6 4 12 12 N 1.46906 * 109.47364 * 239.99904 * 2 1 3 13 13 C 1.46954 * 110.99584 * 298.01669 * 12 2 1 14 14 C 1.53055 * 109.36273 * 176.80944 * 13 12 2 15 15 N 1.47002 * 109.37515 * 58.40304 * 14 13 12 16 16 C 1.46898 * 111.02718 * 176.82469 * 15 14 13 17 17 C 1.46963 * 110.85358 * 300.69403 * 15 14 13 18 18 C 1.46952 * 111.00035 * 174.21801 * 12 2 1 19 19 H 1.08999 * 109.50728 * 63.21120 * 18 12 2 20 20 C 1.53002 * 109.48920 * 303.15346 * 18 12 2 21 21 H 1.09004 * 109.47428 * 187.08493 * 1 2 3 22 22 H 1.09003 * 109.47537 * 307.08332 * 1 2 3 23 23 H 1.09001 * 109.47269 * 67.08293 * 1 2 3 24 24 H 0.97002 * 119.99713 * 179.97438 * 7 6 4 25 25 H 1.09005 * 109.49095 * 296.77306 * 13 12 2 26 26 H 1.09002 * 109.49275 * 56.84596 * 13 12 2 27 27 H 1.08998 * 109.48537 * 178.36530 * 14 13 12 28 28 H 1.08996 * 109.48670 * 298.43453 * 14 13 12 29 29 H 1.09007 * 109.46876 * 183.79087 * 16 15 14 30 30 H 1.08994 * 109.46905 * 303.78427 * 16 15 14 31 31 H 1.08993 * 109.47506 * 63.79079 * 16 15 14 32 32 H 1.08996 * 109.48552 * 299.32882 * 17 15 14 33 33 H 1.08994 * 109.48712 * 179.29139 * 17 15 14 34 34 H 1.09002 * 109.47126 * 307.10051 * 20 18 12 35 35 H 1.09000 * 109.46801 * 67.09753 * 20 18 12 36 36 H 1.09000 * 109.46988 * 187.09787 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6157 -1.6139 1.1321 6 6 1.7471 -0.2068 2.4819 7 7 1.0372 0.8938 2.6017 8 14 2.3693 -1.0877 4.0072 9 1 3.8527 -1.1474 3.9739 10 1 1.9311 -0.3491 5.2187 11 1 1.8191 -2.4665 4.0415 12 7 2.0196 -0.6925 -1.1995 13 6 1.5876 -2.0971 -1.2098 14 6 2.0490 -2.7604 -2.5097 15 7 3.5119 -2.6616 -2.6151 16 6 4.0019 -3.3537 -3.8145 17 6 3.9435 -1.2568 -2.6043 18 6 3.4821 -0.5936 -1.3045 19 1 3.9429 -1.0981 -0.4553 20 6 3.8950 0.8797 -1.3086 21 1 -0.3634 -1.0198 0.1268 22 1 -0.3634 0.6197 0.8198 23 1 -0.3634 0.4002 -0.9465 24 1 0.8363 1.2478 3.4822 25 1 2.0267 -2.6190 -0.3595 26 1 0.5006 -2.1437 -1.1437 27 1 1.7548 -3.8099 -2.5067 28 1 1.5884 -2.2556 -3.3589 29 1 5.0914 -3.3227 -3.8323 30 1 3.6683 -4.3912 -3.7971 31 1 3.6099 -2.8609 -4.7041 32 1 3.5045 -0.7350 -3.4547 33 1 5.0304 -1.2098 -2.6707 34 1 3.3382 1.4109 -2.0805 35 1 3.6780 1.3205 -0.3356 36 1 4.9630 0.9570 -1.5125 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261071630.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:30 Heat of formation + Delta-G solvation = -10.011664 kcal Electronic energy + Delta-G solvation = -15338.867299 eV Core-core repulsion = 13050.120235 eV Total energy + Delta-G solvation = -2288.747064 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42218 -37.15242 -34.61478 -33.33585 -31.27802 -28.15871 -27.81480 -27.16886 -24.76437 -22.71479 -21.83274 -20.49673 -18.04085 -17.20512 -16.43028 -16.15615 -16.02375 -15.45918 -15.15797 -14.90464 -14.39707 -13.56880 -13.38044 -13.19523 -13.17539 -12.89423 -12.72937 -12.63744 -12.48815 -12.26923 -12.12754 -11.98519 -11.79401 -11.51342 -11.19182 -10.94609 -10.43954 -9.24815 -8.91010 -8.03879 -6.22976 1.37644 1.38152 1.45767 2.41000 3.07861 3.17418 3.38952 4.04220 4.18324 4.24668 4.48034 4.51823 4.61358 4.67059 4.69699 4.80613 4.85742 4.89352 4.98991 5.03652 5.06623 5.16673 5.21338 5.22774 5.38036 5.44782 5.58470 5.72117 5.97440 6.12698 6.18565 6.26017 6.43087 6.68853 6.97504 7.47020 8.93783 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035695 B = 0.009885 C = 0.009602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.239913 B = 2831.901755 C = 2915.495985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.208 3.792 3 H 0.021 0.979 4 C -0.543 4.543 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.914 5.914 8 Si 0.943 3.057 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.533 5.533 13 C 0.064 3.936 14 C 0.067 3.933 15 N -0.564 5.564 16 C 0.029 3.971 17 C 0.074 3.926 18 C 0.087 3.913 19 H 0.019 0.981 20 C -0.130 4.130 21 H 0.027 0.973 22 H 0.051 0.949 23 H 0.031 0.969 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -5.302 -10.501 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 H 0.039 0.961 4 C -0.582 4.582 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.553 5.553 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.201 1.201 12 N -0.258 5.258 13 C -0.065 4.065 14 C -0.061 4.061 15 N -0.289 5.289 16 C -0.119 4.119 17 C -0.055 4.055 18 C -0.022 4.022 19 H 0.037 0.963 20 C -0.188 4.188 21 H 0.046 0.954 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.332 -5.179 -10.381 12.384 hybrid contribution 0.078 -0.229 1.351 1.372 sum 4.410 -5.408 -9.030 11.412 Atomic orbital electron populations 1.21582 0.97745 0.99205 0.98764 1.19117 0.92152 0.93531 0.85122 0.96069 1.21837 1.33354 1.10189 0.92826 0.93753 1.25570 0.95283 0.95533 1.01391 1.70012 1.39475 1.21802 1.24029 0.85849 0.78689 0.78845 0.79680 1.20200 1.20745 1.20085 1.62701 1.10239 1.12954 1.39898 1.21963 0.99408 0.89069 0.96080 1.22146 0.87256 1.00354 0.96348 1.62117 1.11766 1.14536 1.40453 1.22374 1.01145 0.98971 0.89361 1.22140 1.00107 0.87280 0.95936 1.21462 0.88697 0.96063 0.96009 0.96334 1.21678 1.01077 0.94936 1.01125 0.95411 0.93049 0.95007 0.92958 0.96400 0.91384 0.89390 0.94345 0.90557 0.90561 0.95235 0.94289 0.89450 0.92300 0.94545 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 8.52 71.98 0.61 -5.03 16 2 C 0.21 10.56 1.99 44.16 0.09 10.64 16 3 H 0.02 1.19 6.09 -2.39 -0.01 1.18 16 4 C -0.54 -29.92 7.10 25.60 0.18 -29.74 16 5 H 0.04 2.52 5.81 -2.91 -0.02 2.50 16 6 C 0.02 1.22 5.32 84.65 0.45 1.67 16 7 N -0.91 -52.78 11.61 21.45 0.25 -52.53 16 8 Si 0.94 44.48 29.54 68.60 2.03 46.50 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.53 -23.08 4.51 -849.78 -3.83 -26.91 16 13 C 0.06 2.55 4.96 86.31 0.43 2.98 16 14 C 0.07 2.12 5.62 86.30 0.49 2.60 16 15 N -0.56 -17.26 4.97 -921.83 -4.58 -21.84 16 16 C 0.03 0.64 9.61 127.69 1.23 1.87 16 17 C 0.07 2.31 4.90 86.31 0.42 2.73 16 18 C 0.09 3.44 2.28 44.92 0.10 3.54 16 19 H 0.02 0.86 6.99 -2.39 -0.02 0.84 16 20 C -0.13 -4.77 8.63 71.98 0.62 -4.15 16 21 H 0.03 1.31 6.75 -2.38 -0.02 1.30 16 22 H 0.05 2.76 6.49 -2.39 -0.02 2.74 16 23 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.02 0.82 6.42 -2.38 -0.02 0.80 16 26 H 0.07 2.73 6.35 -2.39 -0.02 2.72 16 27 H 0.09 2.40 8.13 -2.39 -0.02 2.39 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.56 6.65 -2.39 -0.02 1.54 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -60.14 272.12 -0.49 -60.63 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.03 Total: 7.02 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.62 Total: -12.87 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -8.16 Total: -101.28 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.14 -0.49 -60.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071630.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.620 kcal (2) G-P(sol) polarization free energy of solvation -60.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds