Wall clock time and date at job start Mon Mar 30 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47513 * 2 1 4 4 N 1.46910 * 109.47115 * 120.00020 * 2 1 3 5 5 C 1.46895 * 110.99616 * 306.89480 * 4 2 1 6 6 C 1.52787 * 109.41948 * 187.11410 * 5 4 2 7 7 N 1.47074 * 108.76391 * 306.42043 * 6 5 4 8 8 C 1.36937 * 120.88322 * 231.12027 * 7 6 5 9 9 H 1.07998 * 119.99765 * 30.60585 * 8 7 6 10 10 C 1.38812 * 120.00239 * 210.60408 * 8 7 6 11 11 N 1.31614 * 120.00123 * 11.42518 * 10 8 7 12 12 Si 1.86801 * 119.99921 * 191.42536 * 10 8 7 13 13 H 1.48497 * 109.46862 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47015 * 299.99628 * 12 10 8 15 15 H 1.48497 * 109.47227 * 60.00044 * 12 10 8 16 16 C 1.47083 * 118.23859 * 50.86041 * 7 6 5 17 17 C 1.46899 * 110.99988 * 71.19600 * 4 2 1 18 18 H 1.08999 * 109.49252 * 292.70881 * 17 4 2 19 19 C 1.53004 * 109.49522 * 52.78770 * 17 4 2 20 20 H 1.09000 * 109.46774 * 60.00067 * 1 2 3 21 21 H 1.08997 * 109.47026 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46997 * 300.00213 * 1 2 3 23 23 H 1.09008 * 109.47459 * 239.99659 * 2 1 3 24 24 H 1.08999 * 109.47536 * 171.78735 * 3 2 1 25 25 H 1.09001 * 109.46981 * 291.78817 * 3 2 1 26 26 H 1.08996 * 109.47195 * 51.78184 * 3 2 1 27 27 H 1.09001 * 109.49217 * 307.21231 * 5 4 2 28 28 H 1.09000 * 109.49392 * 67.29306 * 5 4 2 29 29 H 1.09004 * 109.55096 * 186.61114 * 6 5 4 30 30 H 1.08992 * 109.45658 * 66.18576 * 6 5 4 31 31 H 0.96998 * 120.00158 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.63009 * 68.79035 * 16 7 6 33 33 H 1.08998 * 109.63096 * 189.18306 * 16 7 6 34 34 H 1.08998 * 109.47037 * 172.16161 * 19 17 4 35 35 H 1.09000 * 109.46754 * 292.16434 * 19 17 4 36 36 H 1.09003 * 109.46616 * 52.16040 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4189 -0.1281 2.4153 6 6 2.0806 -0.7491 3.6444 7 7 2.0032 -2.2137 3.5341 8 6 1.5134 -2.9712 4.5644 9 1 0.7587 -2.5654 5.2216 10 6 1.9868 -4.2608 4.7638 11 7 3.0543 -4.6774 4.1164 12 14 1.1089 -5.4048 5.9512 13 1 1.8079 -6.7145 5.9848 14 1 1.1142 -4.8065 7.3104 15 1 -0.2929 -5.6027 5.5029 16 6 2.4605 -2.8427 2.2857 17 6 1.7784 -2.1387 1.1078 18 1 0.7060 -2.3313 1.1405 19 6 2.3532 -2.6699 -0.2068 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 3.1201 1.4459 0.1468 25 1 1.8015 1.9121 -0.9543 26 1 1.5618 1.9969 0.8074 27 1 1.5677 0.9517 2.4270 28 1 0.3515 -0.3487 2.4298 29 1 1.5594 -0.4216 4.5440 30 1 3.1248 -0.4399 3.6898 31 1 3.3849 -5.5787 4.2555 32 1 3.5420 -2.7386 2.1980 33 1 2.1934 -3.8994 2.2888 34 1 2.2995 -3.7586 -0.2132 35 1 1.7767 -2.2727 -1.0422 36 1 3.3930 -2.3569 -0.3014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261080016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:14 Heat of formation + Delta-G solvation = 24.772823 kcal Electronic energy + Delta-G solvation = -15332.417693 eV Core-core repulsion = 13045.178997 eV Total energy + Delta-G solvation = -2287.238695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.90497 -35.14804 -32.38723 -31.80357 -29.66624 -26.98077 -26.55077 -25.66852 -23.19600 -21.10723 -20.16757 -18.27370 -16.67100 -15.51387 -15.01757 -14.46556 -14.05066 -13.73436 -13.41477 -13.24345 -12.72416 -12.34724 -12.07793 -11.83550 -11.51367 -11.36451 -11.11950 -11.02658 -10.85355 -10.76311 -10.53502 -10.36312 -10.02678 -9.87973 -9.59934 -9.42221 -8.46044 -7.63247 -6.53539 -5.73173 -3.19523 3.40279 3.45363 3.46486 4.46222 4.53834 5.15496 5.35829 5.43191 5.46600 5.57020 5.76025 5.78345 5.85396 5.92649 6.01333 6.06556 6.12613 6.20966 6.22093 6.33958 6.42235 6.49588 6.51565 6.62550 6.75559 6.89811 7.03235 7.34380 7.75397 7.78140 7.83964 7.93473 8.51688 9.27486 9.89291 10.50502 11.35274 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047991 B = 0.009022 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.299847 B = 3102.615740 C = 3305.283043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.066 3.934 3 C -0.139 4.139 4 N -0.521 5.521 5 C 0.041 3.959 6 C 0.148 3.852 7 N -0.596 5.596 8 C -0.253 4.253 9 H 0.062 0.938 10 C 0.004 3.996 11 N -0.904 5.904 12 Si 0.904 3.096 13 H -0.290 1.290 14 H -0.283 1.283 15 H -0.285 1.285 16 C 0.187 3.813 17 C 0.056 3.944 18 H 0.032 0.968 19 C -0.141 4.141 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.254 0.746 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 7.764 -8.108 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 C -0.197 4.197 4 N -0.246 5.246 5 C -0.088 4.088 6 C 0.021 3.979 7 N -0.319 5.319 8 C -0.383 4.383 9 H 0.080 0.920 10 C -0.195 4.195 11 N -0.549 5.549 12 Si 0.734 3.266 13 H -0.216 1.216 14 H -0.209 1.209 15 H -0.211 1.211 16 C 0.061 3.939 17 C -0.053 4.053 18 H 0.050 0.950 19 C -0.199 4.199 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.487 7.651 -8.028 11.366 hybrid contribution -1.362 -0.749 0.545 1.647 sum -3.849 6.902 -7.483 10.883 Atomic orbital electron populations 1.22444 0.98370 1.01804 1.01513 1.21800 0.92235 0.95211 0.95045 1.21807 1.01861 0.95455 1.00584 1.62251 1.57782 1.03593 1.00982 1.22564 0.96657 0.97864 0.91719 1.20912 0.97263 0.85861 0.93851 1.44052 1.74429 1.00009 1.13361 1.19126 1.15457 0.96137 1.07555 0.91996 1.25147 0.96055 0.99415 0.98864 1.69974 1.22302 1.17851 1.44732 0.86356 0.79015 0.80189 0.81072 1.21578 1.20884 1.21103 1.20861 0.95244 0.96523 0.81230 1.22454 0.98174 0.87209 0.97481 0.95010 1.21835 1.01182 1.00669 0.96197 0.93037 0.92751 0.92459 0.90077 0.91926 0.93145 0.93054 0.91962 0.95330 0.92890 0.95867 0.93586 0.95665 0.89738 0.92361 0.93853 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 8.43 37.16 0.31 -2.24 16 2 C 0.07 0.98 2.63 -67.71 -0.18 0.80 16 3 C -0.14 -1.79 8.95 37.15 0.33 -1.46 16 4 N -0.52 -9.58 4.41 -218.70 -0.97 -10.54 16 5 C 0.04 0.77 4.61 -3.94 -0.02 0.76 16 6 C 0.15 3.28 6.66 -3.84 -0.03 3.26 16 7 N -0.60 -15.59 3.03 -172.29 -0.52 -16.11 16 8 C -0.25 -7.14 9.61 -15.06 -0.14 -7.28 16 9 H 0.06 1.71 7.85 -52.49 -0.41 1.30 16 10 C 0.00 0.11 5.04 -17.43 -0.09 0.02 16 11 N -0.90 -26.68 11.13 55.49 0.62 -26.07 16 12 Si 0.90 22.02 29.57 -169.99 -5.03 17.00 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 C 0.19 4.65 4.65 -3.60 -0.02 4.64 16 17 C 0.06 1.13 2.26 -67.59 -0.15 0.98 16 18 H 0.03 0.68 6.99 -51.93 -0.36 0.32 16 19 C -0.14 -2.38 8.47 37.16 0.31 -2.06 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.82 6.89 -51.93 -0.36 0.47 16 22 H 0.06 0.82 6.49 -51.93 -0.34 0.49 16 23 H 0.08 1.18 5.75 -51.92 -0.30 0.88 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.65 6.81 -51.93 -0.35 0.30 16 27 H 0.06 1.02 6.39 -51.93 -0.33 0.69 16 28 H 0.03 0.56 6.67 -51.93 -0.35 0.21 16 29 H 0.05 1.13 7.95 -51.93 -0.41 0.72 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 2.31 6.26 -51.93 -0.33 1.99 16 34 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 35 H 0.04 0.63 6.57 -51.93 -0.34 0.29 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 270.69 15.07 4.08 4.08 Total: -1.00 -29.53 270.69 -7.45 -36.98 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.97 Total: -2.75 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 0.34 Total: -2.59 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.87 Total: -52.72 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.53 -7.45 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.752 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds