Wall clock time and date at job start Mon Mar 30 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47513 * 2 1 4 4 N 1.46910 * 109.47115 * 120.00020 * 2 1 3 5 5 C 1.46895 * 110.99616 * 306.89480 * 4 2 1 6 6 C 1.52787 * 109.41948 * 187.11410 * 5 4 2 7 7 N 1.47074 * 108.76391 * 306.42043 * 6 5 4 8 8 C 1.36937 * 120.88322 * 231.12027 * 7 6 5 9 9 H 1.07998 * 119.99765 * 30.60585 * 8 7 6 10 10 C 1.38812 * 120.00239 * 210.60408 * 8 7 6 11 11 N 1.31614 * 120.00123 * 11.42518 * 10 8 7 12 12 Si 1.86801 * 119.99921 * 191.42536 * 10 8 7 13 13 H 1.48497 * 109.46862 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47015 * 299.99628 * 12 10 8 15 15 H 1.48497 * 109.47227 * 60.00044 * 12 10 8 16 16 C 1.47083 * 118.23859 * 50.86041 * 7 6 5 17 17 C 1.46899 * 110.99988 * 71.19600 * 4 2 1 18 18 H 1.08999 * 109.49252 * 292.70881 * 17 4 2 19 19 C 1.53004 * 109.49522 * 52.78770 * 17 4 2 20 20 H 1.09000 * 109.46774 * 60.00067 * 1 2 3 21 21 H 1.08997 * 109.47026 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46997 * 300.00213 * 1 2 3 23 23 H 1.09008 * 109.47459 * 239.99659 * 2 1 3 24 24 H 1.08999 * 109.47536 * 171.78735 * 3 2 1 25 25 H 1.09001 * 109.46981 * 291.78817 * 3 2 1 26 26 H 1.08996 * 109.47195 * 51.78184 * 3 2 1 27 27 H 1.09001 * 109.49217 * 307.21231 * 5 4 2 28 28 H 1.09000 * 109.49392 * 67.29306 * 5 4 2 29 29 H 1.09004 * 109.55096 * 186.61114 * 6 5 4 30 30 H 1.08992 * 109.45658 * 66.18576 * 6 5 4 31 31 H 0.96998 * 120.00158 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.63009 * 68.79035 * 16 7 6 33 33 H 1.08998 * 109.63096 * 189.18306 * 16 7 6 34 34 H 1.08998 * 109.47037 * 172.16161 * 19 17 4 35 35 H 1.09000 * 109.46754 * 292.16434 * 19 17 4 36 36 H 1.09003 * 109.46616 * 52.16040 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4189 -0.1281 2.4153 6 6 2.0806 -0.7491 3.6444 7 7 2.0032 -2.2137 3.5341 8 6 1.5134 -2.9712 4.5644 9 1 0.7587 -2.5654 5.2216 10 6 1.9868 -4.2608 4.7638 11 7 3.0543 -4.6774 4.1164 12 14 1.1089 -5.4048 5.9512 13 1 1.8079 -6.7145 5.9848 14 1 1.1142 -4.8065 7.3104 15 1 -0.2929 -5.6027 5.5029 16 6 2.4605 -2.8427 2.2857 17 6 1.7784 -2.1387 1.1078 18 1 0.7060 -2.3313 1.1405 19 6 2.3532 -2.6699 -0.2068 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 3.1201 1.4459 0.1468 25 1 1.8015 1.9121 -0.9543 26 1 1.5618 1.9969 0.8074 27 1 1.5677 0.9517 2.4270 28 1 0.3515 -0.3487 2.4298 29 1 1.5594 -0.4216 4.5440 30 1 3.1248 -0.4399 3.6898 31 1 3.3849 -5.5787 4.2555 32 1 3.5420 -2.7386 2.1980 33 1 2.1934 -3.8994 2.2888 34 1 2.2995 -3.7586 -0.2132 35 1 1.7767 -2.2727 -1.0422 36 1 3.3930 -2.3569 -0.3014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261080016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:14 Heat of formation + Delta-G solvation = 5.558347 kcal Electronic energy + Delta-G solvation = -15333.250895 eV Core-core repulsion = 13045.178997 eV Total energy + Delta-G solvation = -2288.071898 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42420 -36.91627 -34.03378 -33.60541 -31.37114 -28.16737 -28.04514 -27.55680 -25.00417 -22.76501 -21.74671 -19.84686 -18.65531 -17.05077 -16.80608 -16.06276 -15.67247 -15.31144 -15.07795 -14.82249 -14.42444 -13.68178 -13.44429 -13.22681 -13.08612 -12.89617 -12.69299 -12.63924 -12.53425 -12.27898 -12.14525 -12.01866 -11.86846 -11.60275 -11.25957 -11.07547 -10.59635 -9.13049 -8.60836 -7.87469 -5.38430 1.44871 1.47298 1.54368 2.49125 3.04652 3.27969 3.68399 4.00766 4.16124 4.23877 4.32597 4.49484 4.50988 4.56502 4.63127 4.74194 4.78505 4.82048 4.88980 4.98202 5.05437 5.10873 5.13634 5.20900 5.31755 5.37181 5.43750 5.49882 5.60263 5.73383 6.30853 6.41140 6.44815 7.13761 7.82884 8.39517 9.18549 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047991 B = 0.009022 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.299847 B = 3102.615740 C = 3305.283043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 C -0.134 4.134 4 N -0.531 5.531 5 C 0.054 3.946 6 C 0.143 3.857 7 N -0.616 5.616 8 C -0.269 4.269 9 H 0.064 0.936 10 C -0.049 4.049 11 N -0.935 5.935 12 Si 0.972 3.028 13 H -0.291 1.291 14 H -0.274 1.274 15 H -0.278 1.278 16 C 0.197 3.803 17 C 0.069 3.931 18 H 0.019 0.981 19 C -0.132 4.132 20 H 0.078 0.922 21 H 0.037 0.963 22 H 0.051 0.949 23 H 0.090 0.910 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.012 0.988 31 H 0.251 0.749 32 H -0.006 1.006 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 9.067 -9.157 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.044 4.044 3 C -0.192 4.192 4 N -0.256 5.256 5 C -0.075 4.075 6 C 0.017 3.983 7 N -0.340 5.340 8 C -0.400 4.400 9 H 0.082 0.918 10 C -0.245 4.245 11 N -0.581 5.581 12 Si 0.799 3.201 13 H -0.217 1.217 14 H -0.200 1.200 15 H -0.204 1.204 16 C 0.071 3.929 17 C -0.041 4.041 18 H 0.037 0.963 19 C -0.190 4.190 20 H 0.097 0.903 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.108 0.892 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.012 0.988 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.558 8.991 -9.090 13.271 hybrid contribution -1.003 -1.091 0.868 1.718 sum -4.561 7.901 -8.221 12.281 Atomic orbital electron populations 1.22381 0.97432 1.01108 1.02626 1.21959 0.92992 0.96196 0.93301 1.21771 1.01259 0.93897 1.02223 1.62207 1.58433 1.02596 1.02383 1.22377 0.95687 0.99069 0.90362 1.21063 0.97092 0.83984 0.96170 1.44355 1.74493 1.01604 1.13520 1.19476 1.15563 0.96870 1.08055 0.91841 1.25950 0.96836 1.00891 1.00795 1.70152 1.23773 1.17905 1.46251 0.85286 0.77887 0.77811 0.79091 1.21703 1.20006 1.20381 1.20606 0.93726 0.95449 0.83086 1.22131 0.96770 0.88431 0.96785 0.96271 1.21761 1.01410 1.00515 0.95310 0.90319 0.94348 0.92951 0.89248 0.92669 0.90465 0.92852 0.89009 0.95858 0.92486 0.96971 0.94001 0.98760 0.93070 0.92677 0.90864 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.40 8.43 71.98 0.61 -3.79 16 2 C 0.06 1.69 2.63 44.91 0.12 1.81 16 3 C -0.13 -2.94 8.95 71.98 0.64 -2.29 16 4 N -0.53 -18.76 4.41 -845.85 -3.73 -22.50 16 5 C 0.05 1.96 4.61 86.23 0.40 2.35 16 6 C 0.14 6.36 6.66 86.20 0.57 6.94 16 7 N -0.62 -33.01 3.03 -699.01 -2.12 -35.13 16 8 C -0.27 -15.50 9.61 84.03 0.81 -14.69 16 9 H 0.06 3.54 7.85 -2.91 -0.02 3.52 16 10 C -0.05 -2.83 5.04 84.86 0.43 -2.41 16 11 N -0.94 -56.94 11.13 21.65 0.24 -56.70 16 12 Si 0.97 45.88 29.57 68.60 2.03 47.91 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 C 0.20 10.13 4.65 86.35 0.40 10.54 16 17 C 0.07 2.75 2.26 45.00 0.10 2.85 16 18 H 0.02 0.82 6.99 -2.39 -0.02 0.81 16 19 C -0.13 -4.31 8.47 71.98 0.61 -3.70 16 20 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.04 1.07 6.89 -2.39 -0.02 1.06 16 22 H 0.05 1.35 6.49 -2.39 -0.02 1.34 16 23 H 0.09 2.26 5.75 -2.38 -0.01 2.25 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.15 6.81 -2.39 -0.02 1.13 16 27 H 0.09 2.78 6.39 -2.39 -0.02 2.76 16 28 H 0.02 0.87 6.67 -2.39 -0.02 0.86 16 29 H 0.06 2.44 7.95 -2.38 -0.02 2.42 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 32 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.05 2.93 6.26 -2.39 -0.01 2.92 16 34 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 35 H 0.07 1.95 6.57 -2.39 -0.02 1.93 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -64.71 270.69 2.14 -62.57 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.03 Total: 6.23 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 4.69 Total: -2.39 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -5.61 Total: -114.32 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -64.71 2.14 -62.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.131 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds