Wall clock time and date at job start Mon Mar 30 2020 02:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46789 * 2 1 4 4 N 1.46898 * 109.47420 * 119.99754 * 2 1 3 5 5 C 1.46903 * 110.99904 * 300.15368 * 4 2 1 6 6 C 1.53241 * 109.33641 * 172.74722 * 5 4 2 7 7 N 1.47077 * 108.52418 * 53.82630 * 6 5 4 8 8 C 1.36939 * 120.88024 * 128.81781 * 7 6 5 9 9 H 1.07994 * 120.00035 * 209.04960 * 8 7 6 10 10 C 1.38809 * 119.99897 * 29.04838 * 8 7 6 11 11 N 1.31620 * 120.00110 * 11.57940 * 10 8 7 12 12 Si 1.86801 * 119.99983 * 191.58400 * 10 8 7 13 13 H 1.48501 * 109.47301 * 179.97438 * 12 10 8 14 14 H 1.48502 * 109.47209 * 299.99951 * 12 10 8 15 15 H 1.48500 * 109.47106 * 59.99594 * 12 10 8 16 16 C 1.47075 * 118.23864 * 309.08890 * 7 6 5 17 17 C 1.46895 * 111.00258 * 175.85010 * 4 2 1 18 18 H 1.08999 * 109.49208 * 67.26376 * 17 4 2 19 19 C 1.53007 * 109.49116 * 307.21626 * 17 4 2 20 20 H 1.08999 * 109.46917 * 299.99824 * 1 2 3 21 21 H 1.08999 * 109.47452 * 60.00007 * 1 2 3 22 22 H 1.08999 * 109.46516 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46917 * 240.00176 * 2 1 3 24 24 H 1.09006 * 109.47138 * 302.61693 * 3 2 1 25 25 H 1.09001 * 109.47179 * 62.61369 * 3 2 1 26 26 H 1.08996 * 109.47404 * 182.61790 * 3 2 1 27 27 H 1.09001 * 109.49516 * 52.78648 * 5 4 2 28 28 H 1.08998 * 109.51122 * 292.71775 * 5 4 2 29 29 H 1.09006 * 109.62456 * 294.11621 * 6 5 4 30 30 H 1.09003 * 109.78681 * 173.63743 * 6 5 4 31 31 H 0.97008 * 119.99566 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.63216 * 170.61832 * 16 7 6 33 33 H 1.09002 * 109.63170 * 291.20402 * 16 7 6 34 34 H 1.09003 * 109.46869 * 67.23673 * 19 17 4 35 35 H 1.08997 * 109.47096 * 187.23660 * 19 17 4 36 36 H 1.09000 * 109.46984 * 307.23658 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 1.5458 -0.0284 2.4211 6 6 1.9231 -0.8778 3.6394 7 7 3.3695 -1.1409 3.5957 8 6 4.1625 -0.8911 4.6838 9 1 5.2013 -0.6296 4.5463 10 6 3.6312 -0.9739 5.9635 11 7 2.4428 -1.5082 6.1493 12 14 4.6027 -0.3268 7.4218 13 1 3.8207 -0.5311 8.6676 14 1 5.8921 -1.0568 7.5209 15 1 4.8676 1.1226 7.2363 16 6 3.9425 -1.6738 2.3504 17 6 3.4848 -0.7986 1.1848 18 1 3.9224 0.1947 1.2851 19 6 3.9381 -1.4252 -0.1354 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6388 1.9697 -0.8656 25 1 1.7154 1.9426 0.9125 26 1 3.1289 1.4430 -0.0469 27 1 0.4624 0.0837 2.3772 28 1 2.0100 0.9542 2.5048 29 1 1.3782 -1.8215 3.6107 30 1 1.6761 -0.3402 4.5549 31 1 2.0714 -1.5657 7.0437 32 1 5.0307 -1.6591 2.4123 33 1 3.5956 -2.6954 2.1953 34 1 3.7253 -0.7390 -0.9552 35 1 5.0094 -1.6221 -0.0952 36 1 3.4025 -2.3608 -0.2963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261080020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:17 Heat of formation + Delta-G solvation = 26.138759 kcal Electronic energy + Delta-G solvation = -15318.827313 eV Core-core repulsion = 13031.647849 eV Total energy + Delta-G solvation = -2287.179464 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.95008 -35.15502 -32.75796 -31.18619 -29.97387 -26.97830 -26.61422 -25.60919 -23.13666 -21.22374 -20.18836 -18.28032 -16.54595 -15.68882 -14.74798 -14.65616 -14.11351 -13.74357 -13.47770 -13.24797 -12.72924 -12.34950 -12.05903 -11.90815 -11.54718 -11.29574 -11.23341 -10.94109 -10.87197 -10.77522 -10.46352 -10.37754 -10.07722 -9.88962 -9.61163 -9.43452 -8.45865 -7.62612 -6.55815 -5.72438 -3.17507 3.40542 3.45623 3.46722 4.45272 4.53733 5.16674 5.35633 5.42054 5.46525 5.54198 5.64153 5.77315 5.82314 5.87615 5.98667 6.03467 6.10017 6.25374 6.29989 6.33578 6.37746 6.44664 6.52133 6.62207 6.68898 6.83601 7.04142 7.38077 7.75395 7.77302 7.84266 7.93080 8.50961 9.27656 9.89925 10.49730 11.35801 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044397 B = 0.009085 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.520987 B = 3081.374258 C = 3327.282263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 C -0.184 4.184 4 N -0.521 5.521 5 C 0.030 3.970 6 C 0.178 3.822 7 N -0.596 5.596 8 C -0.251 4.251 9 H 0.063 0.937 10 C 0.001 3.999 11 N -0.906 5.906 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.283 1.283 15 H -0.285 1.285 16 C 0.156 3.844 17 C 0.066 3.934 18 H 0.036 0.964 19 C -0.143 4.143 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.089 0.911 31 H 0.254 0.746 32 H 0.052 0.948 33 H 0.024 0.976 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 3.300 -11.270 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 C -0.243 4.243 4 N -0.246 5.246 5 C -0.099 4.099 6 C 0.052 3.948 7 N -0.319 5.319 8 C -0.380 4.380 9 H 0.081 0.919 10 C -0.197 4.197 11 N -0.551 5.551 12 Si 0.735 3.265 13 H -0.216 1.216 14 H -0.209 1.209 15 H -0.211 1.211 16 C 0.029 3.971 17 C -0.044 4.044 18 H 0.054 0.946 19 C -0.201 4.201 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.854 2.783 -11.072 11.566 hybrid contribution 0.784 1.216 0.787 1.647 sum -1.069 3.999 -10.285 11.087 Atomic orbital electron populations 1.21860 0.95051 1.02101 1.01056 1.21756 0.95237 0.92098 0.94886 1.22458 1.01361 0.98768 1.01719 1.62249 1.10066 1.50868 1.01428 1.22964 0.98485 0.96769 0.91665 1.20892 0.83835 0.96246 0.93841 1.44073 1.04275 1.73838 1.09688 1.19150 0.94121 1.40336 0.84426 0.91900 1.25100 0.97446 0.99564 0.97567 1.69977 1.17477 1.46568 1.21048 0.86340 0.79288 0.78818 0.82102 1.21590 1.20914 1.21139 1.20913 0.96144 0.94409 0.85643 1.22081 0.87502 0.98683 0.96163 0.94643 1.21864 1.00683 1.00995 0.96584 0.92496 0.93102 0.92075 0.90370 0.93030 0.92353 0.92787 0.91845 0.95655 0.95787 0.89314 0.93606 0.92952 0.95816 0.93438 0.92616 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.97 37.16 0.33 -1.58 16 2 C 0.07 1.03 2.52 -67.71 -0.17 0.86 16 3 C -0.18 -2.60 8.52 37.16 0.32 -2.28 16 4 N -0.52 -9.58 4.47 -218.70 -0.98 -10.56 16 5 C 0.03 0.61 4.78 -3.70 -0.02 0.59 16 6 C 0.18 4.44 5.39 -3.60 -0.02 4.42 16 7 N -0.60 -15.60 3.04 -172.29 -0.52 -16.12 16 8 C -0.25 -7.07 9.64 -15.06 -0.15 -7.21 16 9 H 0.06 1.74 7.85 -52.49 -0.41 1.32 16 10 C 0.00 0.04 5.05 -17.43 -0.09 -0.05 16 11 N -0.91 -26.75 10.99 55.49 0.61 -26.14 16 12 Si 0.90 22.05 29.57 -169.99 -5.03 17.03 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.16 3.45 5.94 -3.84 -0.02 3.43 16 17 C 0.07 1.22 2.08 -67.82 -0.14 1.08 16 18 H 0.04 0.70 6.85 -51.93 -0.36 0.35 16 19 C -0.14 -2.12 8.46 37.16 0.31 -1.81 16 20 H 0.06 0.79 6.25 -51.93 -0.32 0.47 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.08 1.10 6.12 -51.93 -0.32 0.78 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.89 6.43 -51.93 -0.33 0.56 16 26 H 0.05 0.79 6.80 -51.93 -0.35 0.43 16 27 H 0.06 1.18 5.94 -51.93 -0.31 0.87 16 28 H 0.03 0.53 6.66 -51.93 -0.35 0.19 16 29 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 2.44 6.12 -51.93 -0.32 2.12 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.63 6.69 -51.93 -0.35 0.28 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -29.52 269.71 -7.42 -36.93 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.92 Total: -2.66 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 0.36 Total: -2.55 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.89 Total: -52.82 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.52 -7.42 -36.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.073 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds