Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46789 * 2 1 4 4 N 1.46898 * 109.47420 * 119.99754 * 2 1 3 5 5 C 1.46903 * 110.99904 * 300.15368 * 4 2 1 6 6 C 1.53241 * 109.33641 * 172.74722 * 5 4 2 7 7 N 1.47077 * 108.52418 * 53.82630 * 6 5 4 8 8 C 1.36939 * 120.88024 * 128.81781 * 7 6 5 9 9 H 1.07994 * 120.00035 * 209.04960 * 8 7 6 10 10 C 1.38809 * 119.99897 * 29.04838 * 8 7 6 11 11 N 1.31620 * 120.00110 * 11.57940 * 10 8 7 12 12 Si 1.86801 * 119.99983 * 191.58400 * 10 8 7 13 13 H 1.48501 * 109.47301 * 179.97438 * 12 10 8 14 14 H 1.48502 * 109.47209 * 299.99951 * 12 10 8 15 15 H 1.48500 * 109.47106 * 59.99594 * 12 10 8 16 16 C 1.47075 * 118.23864 * 309.08890 * 7 6 5 17 17 C 1.46895 * 111.00258 * 175.85010 * 4 2 1 18 18 H 1.08999 * 109.49208 * 67.26376 * 17 4 2 19 19 C 1.53007 * 109.49116 * 307.21626 * 17 4 2 20 20 H 1.08999 * 109.46917 * 299.99824 * 1 2 3 21 21 H 1.08999 * 109.47452 * 60.00007 * 1 2 3 22 22 H 1.08999 * 109.46516 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46917 * 240.00176 * 2 1 3 24 24 H 1.09006 * 109.47138 * 302.61693 * 3 2 1 25 25 H 1.09001 * 109.47179 * 62.61369 * 3 2 1 26 26 H 1.08996 * 109.47404 * 182.61790 * 3 2 1 27 27 H 1.09001 * 109.49516 * 52.78648 * 5 4 2 28 28 H 1.08998 * 109.51122 * 292.71775 * 5 4 2 29 29 H 1.09006 * 109.62456 * 294.11621 * 6 5 4 30 30 H 1.09003 * 109.78681 * 173.63743 * 6 5 4 31 31 H 0.97008 * 119.99566 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.63216 * 170.61832 * 16 7 6 33 33 H 1.09002 * 109.63170 * 291.20402 * 16 7 6 34 34 H 1.09003 * 109.46869 * 67.23673 * 19 17 4 35 35 H 1.08997 * 109.47096 * 187.23660 * 19 17 4 36 36 H 1.09000 * 109.46984 * 307.23658 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 1.5458 -0.0284 2.4211 6 6 1.9231 -0.8778 3.6394 7 7 3.3695 -1.1409 3.5957 8 6 4.1625 -0.8911 4.6838 9 1 5.2013 -0.6296 4.5463 10 6 3.6312 -0.9739 5.9635 11 7 2.4428 -1.5082 6.1493 12 14 4.6027 -0.3268 7.4218 13 1 3.8207 -0.5311 8.6676 14 1 5.8921 -1.0568 7.5209 15 1 4.8676 1.1226 7.2363 16 6 3.9425 -1.6738 2.3504 17 6 3.4848 -0.7986 1.1848 18 1 3.9224 0.1947 1.2851 19 6 3.9381 -1.4252 -0.1354 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6388 1.9697 -0.8656 25 1 1.7154 1.9426 0.9125 26 1 3.1289 1.4430 -0.0469 27 1 0.4624 0.0837 2.3772 28 1 2.0100 0.9542 2.5048 29 1 1.3782 -1.8215 3.6107 30 1 1.6761 -0.3402 4.5549 31 1 2.0714 -1.5657 7.0437 32 1 5.0307 -1.6591 2.4123 33 1 3.5956 -2.6954 2.1953 34 1 3.7253 -0.7390 -0.9552 35 1 5.0094 -1.6221 -0.0952 36 1 3.4025 -2.3608 -0.2963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261080020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = 6.852228 kcal Electronic energy + Delta-G solvation = -15319.663639 eV Core-core repulsion = 13031.647849 eV Total energy + Delta-G solvation = -2288.015791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45822 -36.93489 -34.38020 -32.99803 -31.67068 -28.22203 -28.08239 -27.41581 -24.95311 -22.87615 -21.76166 -19.83843 -18.55212 -17.27310 -16.52825 -16.15722 -15.73177 -15.28762 -15.14114 -14.85416 -14.46704 -13.70930 -13.47488 -13.20686 -12.96429 -12.82883 -12.73031 -12.65886 -12.45998 -12.25788 -12.18552 -12.02076 -11.89226 -11.59585 -11.24083 -11.14698 -10.59232 -9.13214 -8.62862 -7.87069 -5.36628 1.44983 1.47546 1.54546 2.49305 3.03953 3.28537 3.68025 4.00334 4.13186 4.24032 4.30221 4.47501 4.51917 4.53807 4.65077 4.75617 4.81347 4.86521 4.89229 4.93155 5.04553 5.08653 5.12719 5.17065 5.32259 5.39623 5.45800 5.51548 5.59288 5.71117 6.29931 6.39870 6.44631 7.13316 7.83059 8.38541 9.18858 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044397 B = 0.009085 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.520987 B = 3081.374258 C = 3327.282263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 C -0.178 4.178 4 N -0.531 5.531 5 C 0.049 3.951 6 C 0.186 3.814 7 N -0.616 5.616 8 C -0.267 4.267 9 H 0.065 0.935 10 C -0.052 4.052 11 N -0.937 5.937 12 Si 0.973 3.027 13 H -0.292 1.292 14 H -0.275 1.275 15 H -0.278 1.278 16 C 0.151 3.849 17 C 0.073 3.927 18 H 0.025 0.975 19 C -0.133 4.133 20 H 0.046 0.954 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.017 0.983 29 H -0.006 1.006 30 H 0.057 0.943 31 H 0.251 0.749 32 H 0.054 0.946 33 H 0.012 0.988 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 4.144 -13.110 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 C -0.237 4.237 4 N -0.256 5.256 5 C -0.080 4.080 6 C 0.060 3.940 7 N -0.339 5.339 8 C -0.397 4.397 9 H 0.083 0.917 10 C -0.247 4.247 11 N -0.583 5.583 12 Si 0.800 3.200 13 H -0.217 1.217 14 H -0.200 1.200 15 H -0.204 1.204 16 C 0.026 3.974 17 C -0.036 4.036 18 H 0.043 0.957 19 C -0.191 4.191 20 H 0.065 0.935 21 H 0.098 0.902 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.036 0.964 29 H 0.012 0.988 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.457 3.629 -12.954 13.531 hybrid contribution 0.660 0.914 1.312 1.729 sum -0.797 4.543 -11.642 12.522 Atomic orbital electron populations 1.21846 0.93776 1.02119 1.02007 1.21920 0.96269 0.92459 0.93408 1.22394 1.00998 0.98173 1.02149 1.62200 1.09955 1.51583 1.01903 1.22599 0.99419 0.95140 0.90890 1.20638 0.83398 0.95089 0.94873 1.44361 1.04546 1.74428 1.10591 1.19501 0.94551 1.40165 0.85494 0.91716 1.25909 0.98520 1.00040 1.00212 1.70159 1.19033 1.47820 1.21272 0.85269 0.77971 0.78354 0.78383 1.21748 1.20020 1.20404 1.21072 0.96246 0.94513 0.85612 1.21929 0.87709 0.97494 0.96515 0.95677 1.21789 1.01402 1.01151 0.94746 0.93469 0.90229 0.92544 0.88585 0.90259 0.94000 0.93381 0.90143 0.96435 0.98768 0.92515 0.94027 0.92710 0.96977 0.91091 0.91367 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.97 71.98 0.65 -2.68 16 2 C 0.07 1.80 2.52 44.92 0.11 1.91 16 3 C -0.18 -4.50 8.52 71.98 0.61 -3.89 16 4 N -0.53 -18.86 4.47 -845.83 -3.78 -22.64 16 5 C 0.05 1.98 4.78 86.38 0.41 2.40 16 6 C 0.19 9.63 5.39 86.35 0.47 10.10 16 7 N -0.62 -33.01 3.04 -699.02 -2.12 -35.14 16 8 C -0.27 -15.35 9.64 84.03 0.81 -14.54 16 9 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 10 C -0.05 -2.98 5.05 84.86 0.43 -2.55 16 11 N -0.94 -57.07 10.99 21.65 0.24 -56.83 16 12 Si 0.97 45.94 29.57 68.60 2.03 47.97 16 13 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 C 0.15 6.74 5.94 86.20 0.51 7.26 16 17 C 0.07 2.63 2.08 44.85 0.09 2.73 16 18 H 0.03 0.97 6.85 -2.39 -0.02 0.95 16 19 C -0.13 -3.56 8.46 71.98 0.61 -2.95 16 20 H 0.05 1.20 6.25 -2.39 -0.01 1.19 16 21 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.10 2.29 6.12 -2.39 -0.01 2.27 16 24 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.04 1.19 6.43 -2.39 -0.02 1.18 16 26 H 0.05 1.27 6.80 -2.39 -0.02 1.25 16 27 H 0.08 2.97 5.94 -2.39 -0.01 2.95 16 28 H 0.02 0.74 6.66 -2.39 -0.02 0.72 16 29 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 30 H 0.06 3.27 6.12 -2.39 -0.01 3.26 16 31 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 32 H 0.05 2.35 7.95 -2.39 -0.02 2.33 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 1.59 6.69 -2.39 -0.02 1.57 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -64.72 269.71 2.10 -62.62 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 1.03 Total: 6.25 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 4.70 Total: -2.22 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -5.67 Total: -114.61 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -64.72 2.10 -62.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.469 kcal (2) G-P(sol) polarization free energy of solvation -64.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds