Wall clock time and date at job start Mon Mar 30 2020 02:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 108.83262 * 2 1 4 4 C 1.50635 * 108.80986 * 241.49851 * 2 1 3 5 5 C 1.54439 * 109.09086 * 146.18156 * 4 2 1 6 6 N 1.39777 * 111.69976 * 77.45345 * 5 4 2 7 7 C 1.46901 * 110.99705 * 170.90125 * 6 5 4 8 8 C 1.47624 * 114.76807 * 297.75491 * 6 5 4 9 9 C 1.50815 * 108.04187 * 82.82289 * 8 6 5 10 10 N 1.46901 * 109.05202 * 25.48638 * 9 8 6 11 11 C 1.50704 * 109.05197 * 144.39088 * 9 8 6 12 12 H 1.07997 * 119.99825 * 119.99954 * 11 9 8 13 13 C 1.37872 * 119.99628 * 299.99746 * 11 9 8 14 14 N 1.31513 * 120.00142 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 120.00067 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46823 * 59.99630 * 15 13 11 17 17 H 1.48496 * 109.46983 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46974 * 300.00036 * 15 13 11 19 19 C 1.53825 * 111.61992 * 264.93872 * 9 8 6 20 20 H 1.09002 * 109.46727 * 301.50020 * 1 2 3 21 21 H 1.09005 * 109.46759 * 61.49532 * 1 2 3 22 22 H 1.08993 * 109.47475 * 181.50197 * 1 2 3 23 23 H 1.08998 * 109.43455 * 26.34819 * 4 2 1 24 24 H 1.08998 * 109.59135 * 266.10885 * 4 2 1 25 25 H 1.09002 * 109.02505 * 316.90106 * 5 4 2 26 26 H 1.08999 * 109.01987 * 198.00255 * 5 4 2 27 27 H 1.09001 * 109.47614 * 56.04149 * 7 6 5 28 28 H 1.08996 * 109.47650 * 176.04459 * 7 6 5 29 29 H 1.09002 * 109.47154 * 296.04338 * 7 6 5 30 30 H 1.09000 * 109.74924 * 202.45921 * 8 6 5 31 31 H 1.09005 * 109.74877 * 323.13768 * 8 6 5 32 32 H 1.00903 * 110.99493 * 60.00624 * 10 9 8 33 33 H 1.00894 * 110.99917 * 183.95563 * 10 9 8 34 34 H 0.96999 * 120.00254 * 179.97438 * 14 13 11 35 35 H 1.08995 * 108.98217 * 161.59635 * 19 9 8 36 36 H 1.09004 * 108.98310 * 280.31415 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8819 1.0316 0.0000 4 6 2.0158 -0.6804 -1.2531 5 6 3.3264 -0.0082 -1.7173 6 7 4.4195 -0.4229 -0.9512 7 6 5.6814 0.0518 -1.5344 8 6 4.3365 -0.0786 0.4819 9 6 3.4997 -1.1296 1.1672 10 7 3.5729 -2.3782 0.3968 11 6 4.0501 -1.3730 2.5488 12 1 3.4293 -1.2008 3.4155 13 6 5.3464 -1.8156 2.7062 14 7 6.1025 -2.0249 1.6507 15 14 6.0286 -2.1181 4.4187 16 1 5.2108 -3.1524 5.1017 17 1 7.4343 -2.5857 4.3160 18 1 5.9832 -0.8559 5.1997 19 6 2.0282 -0.6963 1.2822 20 1 -0.3633 0.5370 0.8763 21 1 -0.3633 0.4905 -0.9032 22 1 -0.3634 -1.0272 0.0269 23 1 1.2608 -0.5850 -2.0335 24 1 2.1996 -1.7351 -1.0485 25 1 3.2213 1.0732 -1.6302 26 1 3.5066 -0.2644 -2.7613 27 1 5.6479 1.1362 -1.6397 28 1 6.5098 -0.2244 -0.8820 29 1 5.8231 -0.4042 -2.5142 30 1 5.3364 -0.0635 0.9156 31 1 3.8695 0.8994 0.5993 32 1 4.5243 -2.7082 0.3326 33 1 2.9714 -3.0841 0.7942 34 1 7.0146 -2.3359 1.7615 35 1 1.4131 -1.5763 1.4697 36 1 1.9257 -0.0086 2.1217 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261276342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:26 Heat of formation + Delta-G solvation = 11.358424 kcal Electronic energy + Delta-G solvation = -15735.462082 eV Core-core repulsion = 13447.641695 eV Total energy + Delta-G solvation = -2287.820387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.76103 -34.66996 -34.10829 -31.05121 -28.70845 -27.27120 -25.59058 -25.03851 -23.65828 -21.10218 -19.39228 -17.87233 -16.36460 -15.12063 -14.51272 -14.32828 -14.17634 -13.88924 -13.11158 -12.59584 -12.46106 -12.33577 -11.66790 -11.56892 -11.13342 -11.04110 -10.94851 -10.71688 -10.64668 -10.53670 -10.32150 -9.76017 -9.54294 -9.49065 -9.46061 -8.93850 -8.46474 -6.90224 -6.69624 -5.86893 -4.13466 3.27405 3.33057 3.36110 4.38574 5.06685 5.30244 5.56285 5.64174 5.74733 5.94262 6.11758 6.22211 6.29549 6.34637 6.37182 6.42583 6.48428 6.61073 6.67058 6.72430 6.73763 6.96040 7.01165 7.04653 7.31588 7.44220 7.63621 7.83287 7.92508 8.25828 8.40819 8.69609 8.83741 9.30129 9.46360 9.70295 10.97786 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033748 B = 0.012629 C = 0.010085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.487325 B = 2216.670521 C = 2775.866987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.047 0.953 4 C -0.119 4.119 5 C 0.095 3.905 6 N -0.523 5.523 7 C 0.040 3.960 8 C 0.098 3.902 9 C 0.241 3.759 10 N -0.818 5.818 11 C -0.547 4.547 12 H 0.050 0.950 13 C 0.068 3.932 14 N -0.878 5.878 15 Si 0.887 3.113 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.092 4.092 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.050 0.950 23 H 0.038 0.962 24 H 0.115 0.885 25 H -0.011 1.011 26 H 0.047 0.953 27 H -0.001 1.001 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.090 0.910 31 H -0.001 1.001 32 H 0.357 0.643 33 H 0.295 0.705 34 H 0.262 0.738 35 H 0.044 0.956 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 2.670 -4.291 6.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.065 0.935 4 C -0.157 4.157 5 C -0.035 4.035 6 N -0.246 5.246 7 C -0.109 4.109 8 C -0.028 4.028 9 C 0.148 3.852 10 N -0.348 5.348 11 C -0.587 4.587 12 H 0.068 0.932 13 C -0.135 4.135 14 N -0.517 5.517 15 Si 0.715 3.285 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.205 1.205 19 C -0.130 4.130 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.133 0.867 25 H 0.006 0.994 26 H 0.065 0.935 27 H 0.017 0.983 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.017 0.983 32 H 0.175 0.825 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.488 2.587 -4.985 7.190 hybrid contribution 0.802 0.442 1.998 2.198 sum -3.687 3.029 -2.987 5.629 Atomic orbital electron populations 1.21943 0.97023 1.00996 1.00096 1.20954 0.93700 0.99012 0.96822 0.93484 1.21711 0.94171 1.04983 0.94798 1.20723 0.92403 0.94181 0.96219 1.58373 1.00240 1.62868 1.03114 1.22251 0.93978 0.95270 0.99380 1.21957 1.02293 0.94254 0.84346 1.18027 0.88366 0.89164 0.89622 1.59428 1.15734 1.05495 1.54144 1.22046 0.97881 1.45102 0.93673 0.93221 1.24979 0.96809 0.95227 0.96450 1.69763 1.08416 1.45634 1.27860 0.86751 0.77912 0.78512 0.85292 1.20487 1.21372 1.20522 1.22036 0.98382 0.98267 0.94331 0.93798 0.93841 0.93068 0.94289 0.86653 0.99367 0.93451 0.98292 0.91242 0.93400 0.89151 0.98276 0.82518 0.89723 0.92801 0.93680 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.84 37.16 0.33 -1.90 16 2 C -0.09 -1.60 2.21 -91.18 -0.20 -1.81 16 3 H 0.05 0.91 6.58 -51.93 -0.34 0.57 16 4 C -0.12 -2.20 5.11 -27.16 -0.14 -2.34 16 5 C 0.09 1.83 4.92 -6.74 -0.03 1.80 16 6 N -0.52 -11.17 3.31 -248.32 -0.82 -11.99 16 7 C 0.04 0.77 9.50 60.07 0.57 1.34 16 8 C 0.10 2.32 4.33 -4.52 -0.02 2.30 16 9 C 0.24 5.69 0.52 -133.42 -0.07 5.62 16 10 N -0.82 -18.96 5.38 -0.74 0.00 -18.96 16 11 C -0.55 -14.34 8.04 -34.44 -0.28 -14.62 16 12 H 0.05 1.33 7.68 -52.49 -0.40 0.92 16 13 C 0.07 1.76 4.91 -17.82 -0.09 1.68 16 14 N -0.88 -23.03 9.73 55.43 0.54 -22.49 16 15 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.09 -1.95 4.31 -25.69 -0.11 -2.06 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.04 0.61 8.00 -51.93 -0.42 0.19 16 22 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 23 H 0.04 0.64 7.62 -51.93 -0.40 0.24 16 24 H 0.12 2.36 5.66 -51.93 -0.29 2.06 16 25 H -0.01 -0.22 7.55 -51.93 -0.39 -0.61 16 26 H 0.05 0.85 7.98 -51.93 -0.41 0.44 16 27 H 0.00 -0.02 8.12 -51.93 -0.42 -0.45 16 28 H 0.07 1.44 7.72 -51.93 -0.40 1.04 16 29 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.09 2.37 5.37 -51.93 -0.28 2.09 16 31 H 0.00 -0.02 6.67 -51.93 -0.35 -0.37 16 32 H 0.36 9.08 6.72 -39.29 -0.26 8.82 16 33 H 0.29 6.69 8.78 -39.29 -0.34 6.35 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.04 0.94 7.73 -51.93 -0.40 0.54 16 36 H 0.04 0.90 7.92 -51.93 -0.41 0.49 16 LS Contribution 264.75 15.07 3.99 3.99 Total: -1.00 -25.42 264.75 -7.28 -32.70 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.93 Total: 11.09 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.04 Total: -9.98 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.29 Total: -53.45 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -25.42 -7.28 -32.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261276342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.058 kcal (2) G-P(sol) polarization free energy of solvation -25.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds