Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 108.74365 * 2 1 4 4 C 1.50754 * 108.85659 * 118.45988 * 2 1 3 5 5 C 1.54435 * 109.03144 * 213.81674 * 4 2 1 6 6 N 1.39774 * 111.76638 * 282.60651 * 5 4 2 7 7 C 1.46889 * 111.00570 * 189.13704 * 6 5 4 8 8 C 1.47634 * 114.76234 * 62.27771 * 6 5 4 9 9 C 1.50822 * 108.03965 * 277.17756 * 8 6 5 10 10 N 1.46905 * 108.99321 * 334.55734 * 9 8 6 11 11 C 1.50700 * 109.05073 * 215.61775 * 9 8 6 12 12 H 1.08000 * 119.99414 * 238.22301 * 11 9 8 13 13 C 1.37873 * 119.99996 * 58.22664 * 11 9 8 14 14 N 1.31512 * 120.00406 * 0.98905 * 13 11 9 15 15 Si 1.86801 * 119.99620 * 180.98313 * 13 11 9 16 16 H 1.48506 * 109.46840 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47647 * 300.00007 * 15 13 11 18 18 H 1.48500 * 109.46997 * 60.00317 * 15 13 11 19 19 C 1.53815 * 111.61406 * 95.06724 * 9 8 6 20 20 H 1.08994 * 109.47381 * 178.44846 * 1 2 3 21 21 H 1.09001 * 109.47218 * 298.45737 * 1 2 3 22 22 H 1.09002 * 109.47261 * 58.45235 * 1 2 3 23 23 H 1.09004 * 109.53947 * 333.67781 * 4 2 1 24 24 H 1.08994 * 109.54413 * 93.85798 * 4 2 1 25 25 H 1.08996 * 109.02110 * 43.19969 * 5 4 2 26 26 H 1.09001 * 109.01808 * 162.09602 * 5 4 2 27 27 H 1.09004 * 109.46989 * 63.95368 * 7 6 5 28 28 H 1.09002 * 109.47946 * 183.95586 * 7 6 5 29 29 H 1.08998 * 109.47569 * 303.96207 * 7 6 5 30 30 H 1.09006 * 109.74739 * 157.54847 * 8 6 5 31 31 H 1.09000 * 109.75222 * 36.82078 * 8 6 5 32 32 H 1.00899 * 110.99557 * 175.82623 * 10 9 8 33 33 H 1.00901 * 110.99605 * 299.78465 * 10 9 8 34 34 H 0.97001 * 119.99560 * 354.40067 * 14 13 11 35 35 H 1.08995 * 108.98303 * 79.68205 * 19 9 8 36 36 H 1.08997 * 108.98263 * 198.48698 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8802 1.0322 0.0000 4 6 2.0172 -0.6799 1.2542 5 6 3.3278 -0.0058 1.7157 6 7 4.4209 -0.4185 0.9486 7 6 5.6826 0.0579 1.5308 8 6 4.3361 -0.0739 -0.4844 9 6 3.5004 -1.1262 -1.1692 10 7 3.5765 -2.3740 -0.3975 11 6 4.0501 -1.3685 -2.5512 12 1 3.4194 -1.2247 -3.4160 13 6 5.3582 -1.7737 -2.7116 14 7 6.1205 -1.9676 -1.6576 15 14 6.0476 -2.0475 -4.4260 16 1 7.4656 -2.4773 -4.3264 17 1 5.2589 -3.1005 -5.1144 18 1 5.9664 -0.7827 -5.1999 19 6 2.0282 -0.6952 -1.2828 20 1 -0.3634 -1.0272 -0.0278 21 1 -0.3634 0.4897 0.9035 22 1 -0.3634 0.5377 -0.8758 23 1 1.2637 -0.5856 2.0362 24 1 2.2004 -1.7346 1.0496 25 1 3.2208 1.0754 1.6291 26 1 3.5106 -0.2620 2.7593 27 1 5.8258 -0.3981 2.5104 28 1 6.5109 -0.2168 0.8776 29 1 5.6475 1.1422 1.6366 30 1 5.3356 -0.0571 -0.9190 31 1 3.8666 0.9029 -0.6012 32 1 2.9733 -3.0802 -0.7919 33 1 4.5281 -2.7039 -0.3366 34 1 5.7893 -1.7482 -0.7726 35 1 1.9239 -0.0075 -2.1220 36 1 1.4141 -1.5763 -1.4684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261276343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = 16.577290 kcal Electronic energy + Delta-G solvation = -15806.358469 eV Core-core repulsion = 13518.764388 eV Total energy + Delta-G solvation = -2287.594080 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.09976 -34.91705 -34.53143 -30.78875 -28.90955 -27.55716 -25.87058 -24.65115 -23.81152 -21.24642 -19.53852 -18.14161 -17.09609 -15.15444 -14.67187 -14.49099 -14.26921 -13.74908 -13.30235 -12.70112 -12.52943 -12.32832 -11.99418 -11.74115 -11.39091 -11.11284 -11.07122 -10.87554 -10.68104 -10.51735 -10.14865 -9.86894 -9.69487 -9.65793 -9.38624 -9.03354 -8.39362 -7.15636 -6.84146 -6.16959 -4.13269 3.41351 3.42012 3.61261 4.50119 4.86286 5.33906 5.43693 5.51304 5.62555 5.79312 5.96295 6.04226 6.10217 6.21270 6.23705 6.28404 6.32526 6.41760 6.48411 6.52045 6.54911 6.77210 6.82009 6.85448 7.11292 7.23627 7.43474 7.56735 8.00500 8.16925 8.34250 8.40195 8.87341 8.95061 9.13329 9.60539 11.03584 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.012708 C = 0.010143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.727694 B = 2202.726348 C = 2759.978584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.047 0.953 4 C -0.119 4.119 5 C 0.095 3.905 6 N -0.532 5.532 7 C 0.032 3.968 8 C 0.077 3.923 9 C 0.225 3.775 10 N -0.824 5.824 11 C -0.626 4.626 12 H 0.045 0.955 13 C 0.027 3.973 14 N -0.920 5.920 15 Si 1.061 2.939 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.290 1.290 19 C -0.085 4.085 20 H 0.051 0.949 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.114 0.886 25 H -0.007 1.007 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.006 0.994 30 H 0.083 0.917 31 H 0.013 0.987 32 H 0.306 0.694 33 H 0.340 0.660 34 H 0.292 0.708 35 H 0.044 0.956 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 3.039 4.297 7.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.066 0.934 4 C -0.157 4.157 5 C -0.035 4.035 6 N -0.255 5.255 7 C -0.117 4.117 8 C -0.050 4.050 9 C 0.133 3.867 10 N -0.354 5.354 11 C -0.667 4.667 12 H 0.064 0.936 13 C -0.178 4.178 14 N -0.561 5.561 15 Si 0.890 3.110 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.217 1.217 19 C -0.123 4.123 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.132 0.868 25 H 0.011 0.989 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.025 0.975 30 H 0.102 0.898 31 H 0.031 0.969 32 H 0.115 0.885 33 H 0.157 0.843 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.128 2.507 4.136 6.359 hybrid contribution -1.034 1.174 -0.268 1.587 sum -5.162 3.681 3.868 7.427 Atomic orbital electron populations 1.21931 0.96785 1.01085 1.00246 1.21000 0.93959 0.99017 0.96694 0.93434 1.21725 0.94195 1.04794 0.94958 1.20716 0.92072 0.94505 0.96238 1.58516 1.00897 1.63112 1.02963 1.22341 0.93463 0.96067 0.99789 1.22238 1.01928 0.95995 0.84792 1.18205 0.89889 0.88362 0.90197 1.59505 1.14240 1.06120 1.55563 1.22765 0.99405 1.51245 0.93273 0.93640 1.25664 0.93629 0.93585 1.04925 1.70798 1.40896 1.43788 1.00656 0.83666 0.76294 0.76372 0.74658 1.20856 1.21667 1.21677 1.21918 0.97465 0.98421 0.94472 0.93024 0.93713 0.93682 0.93950 0.86801 0.98880 0.93037 0.92718 0.91381 0.97538 0.89850 0.96893 0.88543 0.84328 0.89183 0.93691 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.85 37.16 0.33 -1.86 16 2 C -0.09 -1.62 2.20 -91.13 -0.20 -1.82 16 3 H 0.05 0.91 6.58 -51.93 -0.34 0.57 16 4 C -0.12 -2.15 5.12 -27.10 -0.14 -2.29 16 5 C 0.09 1.77 4.92 -6.75 -0.03 1.74 16 6 N -0.53 -11.08 3.13 -248.33 -0.78 -11.86 16 7 C 0.03 0.59 9.50 60.06 0.57 1.17 16 8 C 0.08 1.82 3.73 -4.51 -0.02 1.80 16 9 C 0.23 5.36 0.52 -133.42 -0.07 5.29 16 10 N -0.82 -19.02 5.38 -0.74 0.00 -19.03 16 11 C -0.63 -16.84 8.05 -34.44 -0.28 -17.12 16 12 H 0.05 1.25 7.69 -52.49 -0.40 0.85 16 13 C 0.03 0.74 4.90 -17.82 -0.09 0.65 16 14 N -0.92 -25.88 12.15 55.43 0.67 -25.21 16 15 Si 1.06 24.58 29.90 -169.99 -5.08 19.49 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 19 C -0.08 -1.79 4.31 -25.69 -0.11 -1.90 16 20 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 21 H 0.04 0.61 8.00 -51.93 -0.42 0.20 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.68 7.64 -51.93 -0.40 0.28 16 24 H 0.11 2.28 5.67 -51.93 -0.29 1.99 16 25 H -0.01 -0.12 7.55 -51.93 -0.39 -0.52 16 26 H 0.05 0.89 7.98 -51.93 -0.41 0.48 16 27 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.07 1.38 7.59 -51.93 -0.39 0.98 16 29 H 0.01 0.11 8.12 -51.93 -0.42 -0.31 16 30 H 0.08 2.19 5.01 -51.93 -0.26 1.93 16 31 H 0.01 0.30 6.66 -51.93 -0.35 -0.04 16 32 H 0.31 6.92 8.78 -39.29 -0.34 6.57 16 33 H 0.34 8.63 6.05 -39.29 -0.24 8.39 16 34 H 0.29 7.94 3.75 -40.82 -0.15 7.79 16 35 H 0.04 0.98 7.93 -51.93 -0.41 0.57 16 36 H 0.05 0.97 7.72 -51.93 -0.40 0.57 16 LS Contribution 261.06 15.07 3.93 3.93 Total: -1.00 -27.15 261.06 -6.98 -34.12 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -5.69 Total: 12.89 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.03 Total: -14.35 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.11 Total: -56.09 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.15 -6.98 -34.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261276343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.702 kcal (2) G-P(sol) polarization free energy of solvation -27.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds