Wall clock time and date at job start Mon Mar 30 2020 02:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 108.74365 * 2 1 4 4 C 1.50754 * 108.85659 * 118.45988 * 2 1 3 5 5 C 1.54435 * 109.03144 * 213.81674 * 4 2 1 6 6 N 1.39774 * 111.76638 * 282.60651 * 5 4 2 7 7 C 1.46889 * 111.00570 * 189.13704 * 6 5 4 8 8 C 1.47634 * 114.76234 * 62.27771 * 6 5 4 9 9 C 1.50822 * 108.03965 * 277.17756 * 8 6 5 10 10 N 1.46905 * 108.99321 * 334.55734 * 9 8 6 11 11 C 1.50700 * 109.05073 * 215.61775 * 9 8 6 12 12 H 1.08000 * 119.99414 * 238.22301 * 11 9 8 13 13 C 1.37873 * 119.99996 * 58.22664 * 11 9 8 14 14 N 1.31512 * 120.00406 * 0.98905 * 13 11 9 15 15 Si 1.86801 * 119.99620 * 180.98313 * 13 11 9 16 16 H 1.48506 * 109.46840 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47647 * 300.00007 * 15 13 11 18 18 H 1.48500 * 109.46997 * 60.00317 * 15 13 11 19 19 C 1.53815 * 111.61406 * 95.06724 * 9 8 6 20 20 H 1.08994 * 109.47381 * 178.44846 * 1 2 3 21 21 H 1.09001 * 109.47218 * 298.45737 * 1 2 3 22 22 H 1.09002 * 109.47261 * 58.45235 * 1 2 3 23 23 H 1.09004 * 109.53947 * 333.67781 * 4 2 1 24 24 H 1.08994 * 109.54413 * 93.85798 * 4 2 1 25 25 H 1.08996 * 109.02110 * 43.19969 * 5 4 2 26 26 H 1.09001 * 109.01808 * 162.09602 * 5 4 2 27 27 H 1.09004 * 109.46989 * 63.95368 * 7 6 5 28 28 H 1.09002 * 109.47946 * 183.95586 * 7 6 5 29 29 H 1.08998 * 109.47569 * 303.96207 * 7 6 5 30 30 H 1.09006 * 109.74739 * 157.54847 * 8 6 5 31 31 H 1.09000 * 109.75222 * 36.82078 * 8 6 5 32 32 H 1.00899 * 110.99557 * 175.82623 * 10 9 8 33 33 H 1.00901 * 110.99605 * 299.78465 * 10 9 8 34 34 H 0.97001 * 119.99560 * 354.40067 * 14 13 11 35 35 H 1.08995 * 108.98303 * 79.68205 * 19 9 8 36 36 H 1.08997 * 108.98263 * 198.48698 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8802 1.0322 0.0000 4 6 2.0172 -0.6799 1.2542 5 6 3.3278 -0.0058 1.7157 6 7 4.4209 -0.4185 0.9486 7 6 5.6826 0.0579 1.5308 8 6 4.3361 -0.0739 -0.4844 9 6 3.5004 -1.1262 -1.1692 10 7 3.5765 -2.3740 -0.3975 11 6 4.0501 -1.3685 -2.5512 12 1 3.4194 -1.2247 -3.4160 13 6 5.3582 -1.7737 -2.7116 14 7 6.1205 -1.9676 -1.6576 15 14 6.0476 -2.0475 -4.4260 16 1 7.4656 -2.4773 -4.3264 17 1 5.2589 -3.1005 -5.1144 18 1 5.9664 -0.7827 -5.1999 19 6 2.0282 -0.6952 -1.2828 20 1 -0.3634 -1.0272 -0.0278 21 1 -0.3634 0.4897 0.9035 22 1 -0.3634 0.5377 -0.8758 23 1 1.2637 -0.5856 2.0362 24 1 2.2004 -1.7346 1.0496 25 1 3.2208 1.0754 1.6291 26 1 3.5106 -0.2620 2.7593 27 1 5.8258 -0.3981 2.5104 28 1 6.5109 -0.2168 0.8776 29 1 5.6475 1.1422 1.6366 30 1 5.3356 -0.0571 -0.9190 31 1 3.8666 0.9029 -0.6012 32 1 2.9733 -3.0802 -0.7919 33 1 4.5281 -2.7039 -0.3366 34 1 5.7893 -1.7482 -0.7726 35 1 1.9239 -0.0075 -2.1220 36 1 1.4141 -1.5763 -1.4684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261276343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:29 Heat of formation + Delta-G solvation = -0.358528 kcal Electronic energy + Delta-G solvation = -15807.092861 eV Core-core repulsion = 13518.764388 eV Total energy + Delta-G solvation = -2288.328473 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78190 -36.68965 -36.12058 -32.72800 -30.46956 -29.23753 -27.59300 -26.51773 -25.37550 -22.90610 -21.10119 -19.93589 -19.04649 -16.87787 -16.30191 -16.17676 -15.87833 -15.58749 -14.98531 -14.24949 -14.08905 -13.89069 -13.79104 -13.24668 -13.12095 -12.87833 -12.61659 -12.52511 -12.31818 -12.27396 -11.97515 -11.40933 -11.31690 -11.19373 -11.12989 -10.91215 -10.42211 -8.85803 -8.76011 -8.23187 -6.27530 1.52750 1.57241 1.77610 2.57867 3.14010 3.36835 3.97113 4.08161 4.16114 4.29868 4.36039 4.47457 4.56871 4.58114 4.72575 4.78950 4.81894 4.91338 4.95932 5.02213 5.05246 5.15054 5.29237 5.35176 5.49926 5.52848 5.70165 5.91649 6.06918 6.27671 6.36692 6.74479 6.84115 7.04686 7.15792 7.53500 8.92519 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.012708 C = 0.010143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.727694 B = 2202.726348 C = 2759.978584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 H 0.038 0.962 4 C -0.115 4.115 5 C 0.089 3.911 6 N -0.540 5.540 7 C 0.034 3.966 8 C 0.089 3.911 9 C 0.218 3.782 10 N -0.807 5.807 11 C -0.644 4.644 12 H 0.031 0.969 13 C -0.013 4.013 14 N -0.940 5.940 15 Si 1.102 2.898 16 H -0.286 1.286 17 H -0.279 1.279 18 H -0.281 1.281 19 C -0.080 4.080 20 H 0.055 0.945 21 H 0.066 0.934 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.096 0.904 25 H -0.005 1.005 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.019 0.981 30 H 0.051 0.949 31 H 0.006 0.994 32 H 0.307 0.693 33 H 0.327 0.673 34 H 0.291 0.709 35 H 0.030 0.970 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 3.269 5.204 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.057 0.943 4 C -0.153 4.153 5 C -0.040 4.040 6 N -0.263 5.263 7 C -0.114 4.114 8 C -0.038 4.038 9 C 0.126 3.874 10 N -0.335 5.335 11 C -0.684 4.684 12 H 0.049 0.951 13 C -0.214 4.214 14 N -0.581 5.581 15 Si 0.927 3.073 16 H -0.211 1.211 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.119 4.119 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.114 0.886 25 H 0.013 0.987 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.201 2.745 5.058 7.757 hybrid contribution -0.708 1.118 -0.524 1.423 sum -5.910 3.863 4.534 8.391 Atomic orbital electron populations 1.21862 0.94092 1.01800 1.01639 1.20931 0.96227 0.97877 0.95211 0.94334 1.21689 0.94695 1.03328 0.95577 1.20852 0.91617 0.94662 0.96909 1.58496 1.02428 1.63614 1.01777 1.22335 0.91857 0.97038 1.00165 1.21914 0.99711 0.95482 0.86731 1.18277 0.91477 0.88762 0.88849 1.59530 1.13162 1.05830 1.55026 1.23102 0.99559 1.51280 0.94466 0.95061 1.26733 0.94176 0.93262 1.07234 1.70847 1.41338 1.44860 1.01102 0.83103 0.75601 0.76915 0.71683 1.21146 1.20505 1.20669 1.21838 0.95797 0.98327 0.95907 0.92576 0.91484 0.93268 0.91047 0.88588 0.98690 0.90933 0.90334 0.93603 0.96273 0.93106 0.97553 0.88440 0.85830 0.89347 0.95087 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.85 71.98 0.64 -3.13 16 2 C -0.08 -2.91 2.20 -11.12 -0.02 -2.94 16 3 H 0.04 1.41 6.58 -2.39 -0.02 1.39 16 4 C -0.12 -3.87 5.12 30.35 0.16 -3.71 16 5 C 0.09 3.12 4.92 88.07 0.43 3.56 16 6 N -0.54 -21.98 3.13 -939.57 -2.94 -24.92 16 7 C 0.03 1.24 9.50 127.69 1.21 2.45 16 8 C 0.09 4.23 3.73 85.45 0.32 4.55 16 9 C 0.22 10.45 0.52 2.35 0.00 10.45 16 10 N -0.81 -37.19 5.38 -156.24 -0.84 -38.03 16 11 C -0.64 -35.11 8.05 25.60 0.21 -34.90 16 12 H 0.03 1.74 7.69 -2.91 -0.02 1.72 16 13 C -0.01 -0.70 4.90 84.65 0.41 -0.28 16 14 N -0.94 -53.56 12.15 21.45 0.26 -53.30 16 15 Si 1.10 49.85 29.90 68.60 2.05 51.90 16 16 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 C -0.08 -3.38 4.31 31.27 0.13 -3.24 16 20 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 21 H 0.07 1.57 8.00 -2.39 -0.02 1.55 16 22 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 2.00 7.64 -2.39 -0.02 1.98 16 24 H 0.10 3.64 5.67 -2.39 -0.01 3.63 16 25 H 0.00 -0.17 7.55 -2.39 -0.02 -0.18 16 26 H 0.07 2.26 7.98 -2.39 -0.02 2.24 16 27 H 0.08 2.48 8.11 -2.39 -0.02 2.46 16 28 H 0.04 1.86 7.59 -2.39 -0.02 1.84 16 29 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 30 H 0.05 2.73 5.01 -2.38 -0.01 2.72 16 31 H 0.01 0.30 6.66 -2.39 -0.02 0.28 16 32 H 0.31 13.84 8.78 -89.69 -0.79 13.05 16 33 H 0.33 16.70 6.05 -89.69 -0.54 16.15 16 34 H 0.29 16.10 3.75 -92.71 -0.35 15.75 16 35 H 0.03 1.35 7.93 -2.39 -0.02 1.33 16 36 H 0.05 1.90 7.72 -2.39 -0.02 1.88 16 Total: -1.00 -57.59 261.06 2.18 -55.42 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.16 Total: 36.13 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 3.49 Total: -27.20 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -3.52 Total: -116.24 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -57.59 2.18 -55.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261276343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.057 kcal (2) G-P(sol) polarization free energy of solvation -57.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds