Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.03084 * 2 1 4 4 C 1.45879 * 109.04035 * 118.95378 * 2 1 3 5 5 C 1.53980 * 112.66940 * 181.98381 * 4 2 1 6 6 N 1.44305 * 108.31134 * 278.59384 * 5 4 2 7 7 C 1.46900 * 110.99662 * 221.35059 * 6 5 4 8 8 C 1.47941 * 113.64625 * 95.39960 * 6 5 4 9 9 C 1.53915 * 113.33231 * 318.14042 * 8 6 5 10 10 N 1.46895 * 108.79199 * 78.64148 * 9 8 6 11 11 C 1.50701 * 108.79226 * 196.97699 * 9 8 6 12 12 H 1.08007 * 119.99701 * 5.03247 * 11 9 8 13 13 C 1.37875 * 120.00524 * 185.03917 * 11 9 8 14 14 N 1.31511 * 120.00273 * 188.57524 * 13 11 9 15 15 Si 1.86804 * 119.99474 * 8.57180 * 13 11 9 16 16 H 1.48505 * 109.47099 * 84.65891 * 15 13 11 17 17 H 1.48501 * 109.47112 * 204.65201 * 15 13 11 18 18 H 1.48493 * 109.47634 * 324.65532 * 15 13 11 19 19 C 1.50544 * 112.93853 * 317.74880 * 9 8 6 20 20 H 1.09002 * 109.47147 * 300.00056 * 1 2 3 21 21 H 1.09005 * 109.46912 * 60.00084 * 1 2 3 22 22 H 1.08995 * 109.46942 * 179.97438 * 1 2 3 23 23 H 1.09001 * 108.84193 * 302.80703 * 4 2 1 24 24 H 1.09002 * 108.83859 * 61.26842 * 4 2 1 25 25 H 1.09000 * 109.69367 * 38.29179 * 5 4 2 26 26 H 1.08994 * 109.69678 * 158.88585 * 5 4 2 27 27 H 1.08997 * 109.47184 * 63.95365 * 7 6 5 28 28 H 1.08999 * 109.47257 * 183.95437 * 7 6 5 29 29 H 1.08999 * 109.47620 * 303.95257 * 7 6 5 30 30 H 1.09000 * 108.71140 * 79.13579 * 8 6 5 31 31 H 1.09004 * 108.70991 * 197.14310 * 8 6 5 32 32 H 1.00904 * 110.99656 * 55.25714 * 10 9 8 33 33 H 1.00904 * 111.00283 * 179.21026 * 10 9 8 34 34 H 0.96999 * 119.99807 * 180.02562 * 14 13 11 35 35 H 1.08991 * 109.57287 * 331.94403 * 19 9 8 36 36 H 1.09000 * 109.57278 * 211.56429 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8854 1.0304 0.0000 4 6 2.0059 -0.6676 1.2066 5 6 3.5419 -0.6718 1.3160 6 7 4.0513 -1.7490 0.5020 7 6 5.1465 -2.4515 1.1839 8 6 4.4575 -1.3255 -0.8561 9 6 3.4740 -0.3357 -1.5057 10 7 3.7115 1.0022 -0.9477 11 6 3.7347 -0.2953 -2.9894 12 1 4.4581 -0.9662 -3.4290 13 6 3.0501 0.5981 -3.7857 14 7 3.1495 0.5222 -5.0949 15 14 1.9814 1.9163 -3.0049 16 1 2.8218 3.0871 -2.6469 17 1 0.9314 2.3365 -3.9673 18 1 1.3413 1.3734 -1.7799 19 6 2.0327 -0.7067 -1.2790 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.5924 -0.1582 2.0771 24 1 1.6520 -1.6985 1.2014 25 1 3.9382 0.2783 0.9579 26 1 3.8358 -0.8253 2.3542 27 1 4.7664 -2.9253 2.0889 28 1 5.5585 -3.2124 0.5211 29 1 5.9273 -1.7382 1.4477 30 1 5.4390 -0.8552 -0.7969 31 1 4.5338 -2.2092 -1.4897 32 1 4.6759 1.2759 -1.0625 33 1 3.0910 1.6820 -1.3613 34 1 2.6681 1.1510 -5.6550 35 1 1.9485 -1.7864 -1.1565 36 1 1.4346 -0.3863 -2.1321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261276344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = 9.485840 kcal Electronic energy + Delta-G solvation = -15845.865990 eV Core-core repulsion = 13557.964401 eV Total energy + Delta-G solvation = -2287.901589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78056 -36.68481 -35.84544 -33.78915 -30.56425 -29.40313 -27.63817 -26.90081 -25.30015 -23.11186 -20.60571 -20.09739 -18.65816 -18.03803 -16.58657 -16.15742 -15.82741 -15.43008 -15.13153 -14.88120 -14.55999 -13.75153 -13.40936 -13.32821 -13.14794 -13.00595 -12.65798 -12.54175 -12.33481 -12.10750 -11.95128 -11.78753 -11.31299 -11.04721 -10.98911 -10.81079 -10.61285 -9.23287 -8.80108 -8.37754 -6.43105 1.25166 1.37051 1.45047 2.25650 2.95946 3.24660 3.92028 4.09507 4.23416 4.27973 4.41819 4.52820 4.58079 4.63634 4.77209 4.93345 4.96991 5.05055 5.07696 5.11118 5.19643 5.30102 5.31999 5.44397 5.46203 5.56854 5.59764 5.81902 5.94341 6.03243 6.38167 6.47652 6.58868 6.66702 6.74090 7.23959 8.78049 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.015185 C = 0.011752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.569720 B = 1843.435721 C = 2382.029053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.088 4.088 5 C 0.049 3.951 6 N -0.560 5.560 7 C 0.032 3.968 8 C 0.103 3.897 9 C 0.212 3.788 10 N -0.820 5.820 11 C -0.550 4.550 12 H 0.026 0.974 13 C 0.018 3.982 14 N -0.944 5.944 15 Si 0.911 3.089 16 H -0.276 1.276 17 H -0.314 1.314 18 H -0.181 1.181 19 C -0.084 4.084 20 H 0.068 0.932 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.045 0.955 32 H 0.328 0.672 33 H 0.309 0.691 34 H 0.264 0.736 35 H 0.048 0.952 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 -0.366 14.684 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.126 4.126 5 C -0.080 4.080 6 N -0.285 5.285 7 C -0.115 4.115 8 C -0.025 4.025 9 C 0.121 3.879 10 N -0.356 5.356 11 C -0.590 4.590 12 H 0.044 0.956 13 C -0.181 4.181 14 N -0.583 5.583 15 Si 0.738 3.262 16 H -0.203 1.203 17 H -0.244 1.244 18 H -0.104 1.104 19 C -0.122 4.122 20 H 0.087 0.913 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.575 -0.944 15.175 15.420 hybrid contribution 0.793 1.258 -1.884 2.400 sum -1.782 0.314 13.290 13.413 Atomic orbital electron populations 1.21979 0.95801 1.01491 1.01278 1.20166 0.94704 1.01084 0.94737 0.90436 1.20319 0.95493 1.00009 0.96806 1.22092 0.95621 0.94789 0.95455 1.60729 1.35334 1.29966 1.02481 1.22375 0.92251 0.97818 0.99098 1.22046 0.95262 0.96415 0.88780 1.18396 0.93544 0.86853 0.89107 1.60162 1.08814 1.04374 1.62291 1.22004 1.23100 1.20036 0.93886 0.95557 1.25871 0.97220 1.00100 0.94874 1.70095 1.44534 1.38182 1.05475 0.86823 0.79261 0.79114 0.80982 1.20270 1.24360 1.10394 1.21622 0.94942 0.99424 0.96259 0.91334 0.94203 0.92921 0.91379 0.93082 0.90684 0.91455 0.90090 0.92307 0.95814 0.96378 0.93655 0.86037 0.87136 0.92744 0.93283 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 8.88 71.98 0.64 -3.74 16 2 C -0.09 -2.99 1.28 -12.46 -0.02 -3.01 16 3 H 0.08 2.74 5.18 -2.39 -0.01 2.73 16 4 C -0.09 -2.62 4.56 28.74 0.13 -2.49 16 5 C 0.05 1.47 5.41 87.12 0.47 1.94 16 6 N -0.56 -18.67 4.25 -922.49 -3.92 -22.59 16 7 C 0.03 0.86 9.27 127.69 1.18 2.05 16 8 C 0.10 4.15 4.43 86.41 0.38 4.53 16 9 C 0.21 9.37 0.51 2.30 0.00 9.37 16 10 N -0.82 -32.49 4.47 -156.48 -0.70 -33.19 16 11 C -0.55 -30.65 8.60 25.60 0.22 -30.43 16 12 H 0.03 1.65 7.91 -2.91 -0.02 1.63 16 13 C 0.02 1.01 5.19 84.65 0.44 1.45 16 14 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 15 Si 0.91 41.75 22.87 68.60 1.57 43.32 16 16 H -0.28 -12.13 7.06 99.48 0.70 -11.42 16 17 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 18 H -0.18 -7.28 2.33 99.48 0.23 -7.05 16 19 C -0.08 -3.52 3.45 30.32 0.10 -3.41 16 20 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.04 1.23 7.34 -2.38 -0.02 1.21 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 24 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 25 H 0.08 2.47 5.38 -2.39 -0.01 2.46 16 26 H 0.07 1.72 7.61 -2.39 -0.02 1.70 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.56 8.06 -2.39 -0.02 1.54 16 29 H 0.02 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.02 0.72 7.80 -2.39 -0.02 0.71 16 31 H 0.04 1.99 7.91 -2.38 -0.02 1.97 16 32 H 0.33 12.78 8.78 -89.69 -0.79 11.99 16 33 H 0.31 12.58 2.59 -89.69 -0.23 12.34 16 34 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.05 2.10 7.78 -2.39 -0.02 2.08 16 36 H 0.03 1.56 4.76 -2.39 -0.01 1.55 16 Total: -1.00 -62.67 251.79 0.37 -62.30 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.44 Total: 32.61 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.56 Total: -23.74 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -4.32 Total: -114.49 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.57 Total: 43.32 kcal Total: -62.67 0.37 -62.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261276344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.789 kcal (2) G-P(sol) polarization free energy of solvation -62.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds