Wall clock time and date at job start Mon Mar 30 2020 02:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52551 * 2 1 4 4 C 1.53124 * 109.52425 * 120.12776 * 2 1 3 5 5 C 1.53035 * 109.31058 * 62.28919 * 4 2 1 6 6 N 1.46930 * 109.47615 * 59.16441 * 5 4 2 7 7 C 1.46900 * 110.98685 * 174.17786 * 6 5 4 8 8 C 1.50703 * 109.46890 * 59.76584 * 7 6 5 9 9 H 1.07992 * 120.00180 * 5.06628 * 8 7 6 10 10 C 1.37881 * 119.99471 * 185.07358 * 8 7 6 11 11 N 1.31514 * 120.00453 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99519 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47175 * 60.00312 * 12 10 8 14 14 H 1.48505 * 109.46834 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47187 * 299.99574 * 12 10 8 16 16 C 1.46850 * 111.21691 * 298.28066 * 6 5 4 17 17 H 1.08997 * 109.46299 * 301.72714 * 16 6 5 18 18 C 1.53009 * 109.45845 * 181.76095 * 16 6 5 19 19 N 1.46897 * 109.47186 * 305.85532 * 18 16 6 20 20 C 1.53033 * 109.52340 * 61.74767 * 16 6 5 21 21 H 1.09005 * 109.46808 * 299.87560 * 1 2 3 22 22 H 1.09003 * 109.47331 * 59.86858 * 1 2 3 23 23 H 1.09002 * 109.47306 * 179.87377 * 1 2 3 24 24 H 1.08999 * 109.50335 * 182.26067 * 4 2 1 25 25 H 1.09010 * 109.49753 * 302.33273 * 4 2 1 26 26 H 1.08998 * 109.45977 * 179.21578 * 5 4 2 27 27 H 1.09001 * 109.46451 * 299.18822 * 5 4 2 28 28 H 1.08999 * 109.47308 * 179.76715 * 7 6 5 29 29 H 1.08999 * 109.46886 * 299.76825 * 7 6 5 30 30 H 0.96992 * 120.00401 * 179.97438 * 11 10 8 31 31 H 1.08999 * 109.46832 * 65.85642 * 18 16 6 32 32 H 1.09001 * 109.46835 * 185.86137 * 18 16 6 33 33 H 1.00898 * 111.00141 * 173.98140 * 19 18 16 34 34 H 1.00901 * 111.00421 * 297.94299 * 19 18 16 35 35 H 1.09002 * 109.50175 * 180.87735 * 20 16 6 36 36 H 1.09001 * 109.54241 * 60.77862 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2482 5 6 1.5779 -2.1823 1.2131 6 7 2.0950 -2.8319 0.0009 7 6 1.7862 -4.2680 0.0010 8 6 0.2926 -4.4606 0.0587 9 1 -0.3645 -3.6050 0.0093 10 6 -0.2348 -5.7293 0.1745 11 7 0.5653 -6.7713 0.2342 12 14 -2.0861 -5.9680 0.2468 13 1 -2.7027 -5.4351 -0.9946 14 1 -2.3941 -7.4155 0.3699 15 1 -2.6332 -5.2433 1.4219 16 6 1.5792 -2.1827 -1.2111 17 1 0.4898 -2.2172 -1.2060 18 6 2.1065 -2.9163 -2.4460 19 7 3.5721 -2.9927 -2.3816 20 6 2.0430 -0.7248 -1.2473 21 1 -0.3633 0.5119 0.8911 22 1 -0.3634 0.5159 -0.8888 23 1 -0.3634 -1.0277 -0.0023 24 1 3.1310 -0.6893 1.2685 25 1 1.6453 -0.2377 2.1395 26 1 1.9526 -2.7039 2.0938 27 1 0.4884 -2.2168 1.2069 28 1 2.1764 -4.7237 -0.9091 29 1 2.2470 -4.7387 0.8694 30 1 0.1943 -7.6637 0.3161 31 1 1.6911 -3.9236 -2.4752 32 1 1.8101 -2.3748 -3.3444 33 1 3.9382 -3.5565 -3.1339 34 1 3.9828 -2.0711 -2.3874 35 1 1.6471 -0.2390 -2.1392 36 1 3.1323 -0.6891 -1.2668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300039783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:35 Heat of formation + Delta-G solvation = -7.799507 kcal Electronic energy + Delta-G solvation = -15404.694479 eV Core-core repulsion = 13116.043341 eV Total energy + Delta-G solvation = -2288.651138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.00909 -34.56137 -33.60520 -31.90673 -29.60640 -27.81145 -25.73741 -24.72581 -23.26442 -21.37505 -19.82095 -17.94528 -16.00859 -15.63173 -15.11466 -14.73335 -14.41921 -13.86145 -13.40505 -13.38465 -12.82876 -12.63364 -11.98168 -11.66808 -11.30903 -11.23047 -11.04826 -10.97696 -10.76163 -10.40516 -10.31207 -10.18524 -9.87307 -9.64048 -9.54595 -9.09622 -8.31889 -7.92522 -6.86148 -5.92107 -4.02402 3.30903 3.36279 3.38289 4.45731 5.02998 5.22647 5.25692 5.27932 5.36099 5.49121 5.81642 5.86829 5.96692 5.99746 6.04733 6.14670 6.21250 6.29021 6.38019 6.51321 6.61182 6.63493 6.72115 6.85612 6.96166 7.08323 7.50955 7.69699 7.78383 8.05009 8.08032 8.28181 8.47558 8.59117 9.11719 9.63763 11.10582 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.011433 C = 0.009796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.907756 B = 2448.477093 C = 2857.537256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.057 0.943 4 C -0.111 4.111 5 C 0.061 3.939 6 N -0.514 5.514 7 C 0.190 3.810 8 C -0.547 4.547 9 H 0.052 0.948 10 C 0.065 3.935 11 N -0.890 5.890 12 Si 0.883 3.117 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.096 3.904 17 H 0.045 0.955 18 C 0.071 3.929 19 N -0.826 5.826 20 C -0.108 4.108 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.084 0.916 32 H 0.009 0.991 33 H 0.327 0.673 34 H 0.329 0.671 35 H 0.049 0.951 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 11.156 -2.992 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.149 4.149 5 C -0.068 4.068 6 N -0.238 5.238 7 C 0.064 3.936 8 C -0.587 4.587 9 H 0.070 0.930 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.711 3.289 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.204 1.204 16 C -0.014 4.014 17 H 0.063 0.937 18 C -0.060 4.060 19 N -0.354 5.354 20 C -0.146 4.146 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.027 0.973 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.067 0.933 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.530 10.642 -2.265 11.171 hybrid contribution -2.127 0.105 -0.855 2.295 sum 0.402 10.747 -3.121 11.198 Atomic orbital electron populations 1.21952 0.95882 1.02624 1.00464 1.21074 0.95424 0.98148 0.96038 0.92472 1.21651 1.00687 0.96457 0.96133 1.21899 0.97960 0.92459 0.94433 1.62366 1.57225 1.05165 0.99053 1.19743 0.93396 0.82197 0.98255 1.21815 0.93776 0.92266 1.50796 0.92967 1.24941 0.97317 0.96192 0.95258 1.69939 1.34406 0.98429 1.50127 0.86812 0.86590 0.77008 0.78503 1.20421 1.21286 1.20387 1.21392 0.96777 0.91665 0.91523 0.93741 1.21843 0.88264 1.01257 0.94634 1.58476 1.05730 1.18534 1.52703 1.21679 1.00805 0.95858 0.96291 0.93368 0.93530 0.91508 0.91954 0.92965 0.92106 0.94520 0.94142 0.95472 0.92935 0.89747 0.97257 0.86141 0.85862 0.93278 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.62 37.16 0.32 -1.95 16 2 C -0.09 -1.32 3.21 -90.50 -0.29 -1.61 16 3 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -1.81 5.59 -26.65 -0.15 -1.96 16 5 C 0.06 1.23 4.80 -3.79 -0.02 1.22 16 6 N -0.51 -11.10 4.40 -228.05 -1.00 -12.10 16 7 C 0.19 4.94 4.72 -4.97 -0.02 4.92 16 8 C -0.55 -15.04 7.72 -34.44 -0.27 -15.31 16 9 H 0.05 1.43 5.86 -52.49 -0.31 1.12 16 10 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 11 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 12 Si 0.88 21.60 29.54 -169.99 -5.02 16.58 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 C 0.10 1.84 1.61 -67.72 -0.11 1.73 16 17 H 0.04 0.95 5.21 -51.93 -0.27 0.68 16 18 C 0.07 1.30 5.70 -3.82 -0.02 1.28 16 19 N -0.83 -13.64 9.20 -10.37 -0.10 -13.74 16 20 C -0.11 -1.70 4.68 -26.65 -0.12 -1.82 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.17 4.93 -51.93 -0.26 0.92 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 26 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 27 H 0.04 0.80 5.13 -51.93 -0.27 0.53 16 28 H 0.04 1.12 6.02 -51.93 -0.31 0.81 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.08 1.82 6.59 -51.93 -0.34 1.48 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.33 4.76 9.08 -39.29 -0.36 4.40 16 34 H 0.33 4.80 7.49 -39.29 -0.29 4.50 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.01 6.81 -51.93 -0.35 0.65 16 LS Contribution 268.53 15.07 4.05 4.05 Total: -1.00 -29.05 268.53 -7.81 -36.87 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.70 Total: 5.82 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.78 Total: -11.77 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.36 Total: -51.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.05 -7.81 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300039783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.068 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds