Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.52637 * 2 1 4 4 C 1.53123 * 109.52189 * 239.87469 * 2 1 3 5 5 C 1.53033 * 109.27875 * 182.37548 * 4 2 1 6 6 N 1.46851 * 109.52483 * 59.18281 * 5 4 2 7 7 C 1.46896 * 111.00234 * 174.16019 * 6 5 4 8 8 C 1.50700 * 109.47171 * 67.19618 * 7 6 5 9 9 H 1.07997 * 120.00207 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99996 * 179.72594 * 8 7 6 11 11 N 1.31515 * 120.00051 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00012 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47040 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47099 * 120.00179 * 12 10 8 15 15 H 1.48502 * 109.46838 * 239.99682 * 12 10 8 16 16 C 1.46847 * 111.19522 * 298.25600 * 6 5 4 17 17 H 1.08995 * 109.46665 * 301.72574 * 16 6 5 18 18 C 1.52999 * 109.46035 * 181.75432 * 16 6 5 19 19 N 1.46906 * 109.46709 * 176.63109 * 18 16 6 20 20 C 1.53045 * 109.52391 * 61.74120 * 16 6 5 21 21 H 1.08997 * 109.47279 * 180.12231 * 1 2 3 22 22 H 1.08999 * 109.46693 * 300.12346 * 1 2 3 23 23 H 1.09001 * 109.47265 * 60.12477 * 1 2 3 24 24 H 1.09005 * 109.49883 * 62.43848 * 4 2 1 25 25 H 1.08994 * 109.53980 * 302.33795 * 4 2 1 26 26 H 1.09000 * 109.46716 * 299.16503 * 5 4 2 27 27 H 1.09004 * 109.45353 * 179.19500 * 5 4 2 28 28 H 1.09004 * 109.47238 * 307.19747 * 7 6 5 29 29 H 1.08996 * 109.47203 * 187.19862 * 7 6 5 30 30 H 0.96998 * 120.00154 * 179.97438 * 11 10 8 31 31 H 1.08993 * 109.47094 * 296.63080 * 18 16 6 32 32 H 1.08999 * 109.47162 * 56.63363 * 18 16 6 33 33 H 1.00908 * 110.99615 * 184.82206 * 19 18 16 34 34 H 1.00897 * 110.99822 * 308.77397 * 19 18 16 35 35 H 1.08999 * 109.50317 * 180.87914 * 20 16 6 36 36 H 1.08998 * 109.53311 * 60.77703 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7243 -1.2483 5 6 3.5708 -0.7731 -1.2130 6 7 4.0116 -1.4767 -0.0017 7 6 5.4685 -1.6643 -0.0026 8 6 6.1475 -0.3248 0.1235 9 1 5.5559 0.5757 0.1973 10 6 7.5240 -0.2495 0.1508 11 7 8.2444 -1.3467 0.0674 12 14 8.3656 1.4108 0.3078 13 1 7.3389 2.4809 0.3846 14 1 9.1953 1.4307 1.5392 15 1 9.2318 1.6405 -0.8764 16 6 3.5722 -0.7736 1.2103 17 1 3.9679 0.2419 1.2047 18 6 4.0887 -1.5149 2.4451 19 7 3.7181 -0.7684 3.6549 20 6 2.0430 -0.7249 1.2474 21 1 -0.3633 -1.0276 0.0022 22 1 -0.3633 0.5158 0.8889 23 1 -0.3634 0.5119 -0.8911 24 1 1.7151 -0.1883 -2.1395 25 1 1.6456 -1.7396 -1.2687 26 1 3.9666 0.2425 -1.2073 27 1 3.9376 -1.3008 -2.0934 28 1 5.7732 -2.1397 -0.9350 29 1 5.7539 -2.2968 0.8379 30 1 9.2127 -1.2937 0.0862 31 1 3.6463 -2.5104 2.4827 32 1 5.1738 -1.6013 2.3896 33 1 4.1146 -1.1952 4.4788 34 1 3.9934 0.1995 3.5810 35 1 1.7175 -0.1893 2.1392 36 1 1.6464 -1.7399 1.2673 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300039784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -17.092606 kcal Electronic energy + Delta-G solvation = -15146.880101 eV Core-core repulsion = 12857.825984 eV Total energy + Delta-G solvation = -2289.054117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.79307 -34.69503 -33.79511 -32.19181 -29.68088 -28.30135 -25.63125 -24.40832 -22.72319 -21.45840 -19.72592 -19.02955 -16.34215 -15.50408 -14.87331 -14.63136 -14.29945 -13.89670 -13.66789 -13.35681 -12.85135 -12.53793 -12.04908 -11.70756 -11.61244 -11.38890 -11.25140 -11.05667 -10.84172 -10.36025 -10.32337 -10.21565 -9.97388 -9.74189 -9.55656 -9.33961 -8.47337 -8.05606 -7.11683 -6.05147 -4.14716 3.22051 3.30909 3.33991 4.36861 4.86233 5.19112 5.23695 5.24986 5.36410 5.49627 5.81296 5.85493 5.94697 6.02840 6.10218 6.15040 6.22657 6.34023 6.49040 6.51785 6.61476 6.66814 6.75064 6.76632 6.87673 7.07377 7.31189 7.51798 7.61296 7.87686 7.88931 8.11127 8.29797 8.38126 8.97177 9.52257 10.99055 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.009992 C = 0.009031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.228148 B = 2801.449678 C = 3099.557207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.060 0.940 4 C -0.111 4.111 5 C 0.066 3.934 6 N -0.537 5.537 7 C 0.183 3.817 8 C -0.545 4.545 9 H 0.056 0.944 10 C 0.064 3.936 11 N -0.890 5.890 12 Si 0.886 3.114 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.099 3.901 17 H 0.041 0.959 18 C 0.066 3.934 19 N -0.851 5.851 20 C -0.096 4.096 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.035 0.965 30 H 0.261 0.739 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.334 0.666 34 H 0.335 0.665 35 H 0.065 0.935 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 1.899 1.811 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.063 4.063 6 N -0.262 5.262 7 C 0.057 3.943 8 C -0.584 4.584 9 H 0.074 0.926 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.714 3.286 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.011 4.011 17 H 0.059 0.941 18 C -0.065 4.065 19 N -0.380 5.380 20 C -0.134 4.134 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.214 1.157 1.598 11.386 hybrid contribution 2.178 1.909 0.122 2.899 sum -9.036 3.066 1.719 9.695 Atomic orbital electron populations 1.21793 0.95993 1.01329 1.00790 1.21201 0.94646 0.99346 0.96244 0.92121 1.21681 0.96487 1.00211 0.96482 1.21827 0.93174 0.97541 0.93764 1.62387 1.16277 1.47258 1.00305 1.19811 0.80725 0.95902 0.97849 1.21782 0.91738 0.94094 1.50820 0.92599 1.24965 0.97568 0.96205 0.95091 1.69952 1.05796 1.26948 1.50216 0.86639 0.79659 0.84594 0.77745 1.19894 1.21014 1.20916 1.21285 0.93409 0.96182 0.90175 0.94147 1.21846 0.99328 0.96721 0.88562 1.58836 1.67633 1.06640 1.04851 1.21600 0.95390 1.00131 0.96257 0.92939 0.93176 0.93382 0.92853 0.91888 0.94826 0.91870 0.95395 0.94709 0.92898 0.91715 0.93199 0.85549 0.85309 0.91658 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.20 37.16 0.34 -1.44 16 2 C -0.10 -1.47 2.79 -90.50 -0.25 -1.72 16 3 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.78 5.38 -26.65 -0.14 -1.92 16 5 C 0.07 1.30 5.15 -3.83 -0.02 1.28 16 6 N -0.54 -11.57 4.69 -228.12 -1.07 -12.64 16 7 C 0.18 4.66 4.57 -4.98 -0.02 4.63 16 8 C -0.55 -14.74 7.55 -34.44 -0.26 -15.00 16 9 H 0.06 1.52 5.84 -52.49 -0.31 1.22 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 12 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.10 1.94 1.55 -67.72 -0.10 1.84 16 17 H 0.04 0.89 6.51 -51.93 -0.34 0.55 16 18 C 0.07 1.25 5.88 -3.82 -0.02 1.23 16 19 N -0.85 -13.45 9.05 -10.37 -0.09 -13.54 16 20 C -0.10 -1.60 4.52 -26.65 -0.12 -1.73 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.03 0.72 7.10 -51.93 -0.37 0.35 16 27 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 28 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 29 H 0.03 0.94 6.32 -51.93 -0.33 0.61 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.10 6.04 -51.93 -0.31 0.79 16 33 H 0.33 4.63 9.08 -39.29 -0.36 4.27 16 34 H 0.34 5.21 8.93 -39.29 -0.35 4.86 16 35 H 0.06 1.06 7.73 -51.93 -0.40 0.66 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -28.12 277.02 -8.09 -36.21 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.12 Total: 5.89 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -0.70 Total: -11.16 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.43 Total: -51.38 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.12 -8.09 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300039784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.121 kcal (2) G-P(sol) polarization free energy of solvation -28.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds