Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.52637 * 2 1 4 4 C 1.53123 * 109.52189 * 239.87469 * 2 1 3 5 5 C 1.53033 * 109.27875 * 182.37548 * 4 2 1 6 6 N 1.46851 * 109.52483 * 59.18281 * 5 4 2 7 7 C 1.46896 * 111.00234 * 174.16019 * 6 5 4 8 8 C 1.50700 * 109.47171 * 67.19618 * 7 6 5 9 9 H 1.07997 * 120.00207 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99996 * 179.72594 * 8 7 6 11 11 N 1.31515 * 120.00051 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00012 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47040 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47099 * 120.00179 * 12 10 8 15 15 H 1.48502 * 109.46838 * 239.99682 * 12 10 8 16 16 C 1.46847 * 111.19522 * 298.25600 * 6 5 4 17 17 H 1.08995 * 109.46665 * 301.72574 * 16 6 5 18 18 C 1.52999 * 109.46035 * 181.75432 * 16 6 5 19 19 N 1.46906 * 109.46709 * 176.63109 * 18 16 6 20 20 C 1.53045 * 109.52391 * 61.74120 * 16 6 5 21 21 H 1.08997 * 109.47279 * 180.12231 * 1 2 3 22 22 H 1.08999 * 109.46693 * 300.12346 * 1 2 3 23 23 H 1.09001 * 109.47265 * 60.12477 * 1 2 3 24 24 H 1.09005 * 109.49883 * 62.43848 * 4 2 1 25 25 H 1.08994 * 109.53980 * 302.33795 * 4 2 1 26 26 H 1.09000 * 109.46716 * 299.16503 * 5 4 2 27 27 H 1.09004 * 109.45353 * 179.19500 * 5 4 2 28 28 H 1.09004 * 109.47238 * 307.19747 * 7 6 5 29 29 H 1.08996 * 109.47203 * 187.19862 * 7 6 5 30 30 H 0.96998 * 120.00154 * 179.97438 * 11 10 8 31 31 H 1.08993 * 109.47094 * 296.63080 * 18 16 6 32 32 H 1.08999 * 109.47162 * 56.63363 * 18 16 6 33 33 H 1.00908 * 110.99615 * 184.82206 * 19 18 16 34 34 H 1.00897 * 110.99822 * 308.77397 * 19 18 16 35 35 H 1.08999 * 109.50317 * 180.87914 * 20 16 6 36 36 H 1.08998 * 109.53311 * 60.77703 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7243 -1.2483 5 6 3.5708 -0.7731 -1.2130 6 7 4.0116 -1.4767 -0.0017 7 6 5.4685 -1.6643 -0.0026 8 6 6.1475 -0.3248 0.1235 9 1 5.5559 0.5757 0.1973 10 6 7.5240 -0.2495 0.1508 11 7 8.2444 -1.3467 0.0674 12 14 8.3656 1.4108 0.3078 13 1 7.3389 2.4809 0.3846 14 1 9.1953 1.4307 1.5392 15 1 9.2318 1.6405 -0.8764 16 6 3.5722 -0.7736 1.2103 17 1 3.9679 0.2419 1.2047 18 6 4.0887 -1.5149 2.4451 19 7 3.7181 -0.7684 3.6549 20 6 2.0430 -0.7249 1.2474 21 1 -0.3633 -1.0276 0.0022 22 1 -0.3633 0.5158 0.8889 23 1 -0.3634 0.5119 -0.8911 24 1 1.7151 -0.1883 -2.1395 25 1 1.6456 -1.7396 -1.2687 26 1 3.9666 0.2425 -1.2073 27 1 3.9376 -1.3008 -2.0934 28 1 5.7732 -2.1397 -0.9350 29 1 5.7539 -2.2968 0.8379 30 1 9.2127 -1.2937 0.0862 31 1 3.6463 -2.5104 2.4827 32 1 5.1738 -1.6013 2.3896 33 1 4.1146 -1.1952 4.4788 34 1 3.9934 0.1995 3.5810 35 1 1.7175 -0.1893 2.1392 36 1 1.6464 -1.7399 1.2673 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300039784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -37.335813 kcal Electronic energy + Delta-G solvation = -15147.757912 eV Core-core repulsion = 12857.825984 eV Total energy + Delta-G solvation = -2289.931928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36729 -36.19250 -35.44303 -34.13320 -31.13433 -29.91700 -27.42527 -25.86000 -24.51291 -23.06009 -21.19503 -20.60370 -18.38267 -17.16748 -16.64357 -16.14258 -15.87955 -15.45815 -15.15233 -14.88720 -14.39235 -14.19863 -13.54214 -13.26566 -13.10422 -13.04102 -12.75646 -12.71982 -12.55142 -12.09600 -12.07901 -11.80266 -11.70579 -11.39920 -10.99530 -10.90372 -10.62097 -9.51586 -8.98899 -8.16796 -6.36930 1.30915 1.33151 1.44036 2.33279 3.06744 3.26324 3.84739 3.94948 4.01392 4.14081 4.32957 4.44045 4.57403 4.70665 4.79890 4.84257 4.88443 5.03773 5.06676 5.11949 5.15108 5.19230 5.30040 5.36061 5.39444 5.44595 5.47748 5.64880 5.74625 6.06784 6.17339 6.31281 6.55861 6.68378 6.85689 7.34456 8.84534 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.009992 C = 0.009031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.228148 B = 2801.449678 C = 3099.557207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 H 0.053 0.947 4 C -0.101 4.101 5 C 0.064 3.936 6 N -0.537 5.537 7 C 0.198 3.802 8 C -0.547 4.547 9 H 0.052 0.948 10 C 0.012 3.988 11 N -0.925 5.925 12 Si 0.953 3.047 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.279 1.279 16 C 0.100 3.900 17 H 0.016 0.984 18 C 0.077 3.923 19 N -0.837 5.837 20 C -0.086 4.086 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.012 0.988 27 H 0.054 0.946 28 H -0.002 1.002 29 H 0.013 0.987 30 H 0.264 0.736 31 H 0.066 0.934 32 H 0.011 0.989 33 H 0.347 0.653 34 H 0.339 0.661 35 H 0.076 0.924 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 3.102 2.152 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.071 0.929 4 C -0.139 4.139 5 C -0.065 4.065 6 N -0.262 5.262 7 C 0.071 3.929 8 C -0.587 4.587 9 H 0.070 0.930 10 C -0.187 4.187 11 N -0.565 5.565 12 Si 0.779 3.221 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.204 1.204 16 C -0.009 4.009 17 H 0.034 0.966 18 C -0.055 4.055 19 N -0.367 5.367 20 C -0.123 4.123 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.016 0.984 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.029 0.971 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.956 2.365 1.951 13.314 hybrid contribution 2.708 1.502 0.025 3.096 sum -10.248 3.867 1.976 11.130 Atomic orbital electron populations 1.21715 0.93157 1.02158 1.02096 1.21203 0.96935 0.98415 0.94834 0.92858 1.21631 0.92985 1.01161 0.98121 1.21906 0.96216 0.95760 0.92606 1.62360 1.13542 1.48286 1.01994 1.19455 0.83404 0.94816 0.95216 1.21928 0.92047 0.94365 1.50312 0.93032 1.25782 0.98329 0.99827 0.94788 1.70069 1.06168 1.29115 1.51171 0.85577 0.78524 0.80136 0.77889 1.19299 1.20308 1.20441 1.21347 0.95712 0.94402 0.89412 0.96622 1.21628 0.96775 0.97252 0.89807 1.58790 1.67197 1.06622 1.04091 1.21520 0.92492 1.00643 0.97686 0.92331 0.92160 0.91905 0.90496 0.91286 0.96937 0.92739 0.98400 0.96850 0.92671 0.91544 0.97099 0.84042 0.84898 0.90594 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.20 71.98 0.66 -2.20 16 2 C -0.10 -2.69 2.79 -10.71 -0.03 -2.72 16 3 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.10 -3.05 5.38 30.65 0.16 -2.89 16 5 C 0.06 2.53 5.15 86.32 0.44 2.98 16 6 N -0.54 -23.57 4.69 -875.64 -4.11 -27.68 16 7 C 0.20 10.52 4.57 85.56 0.39 10.91 16 8 C -0.55 -30.40 7.55 25.60 0.19 -30.21 16 9 H 0.05 2.87 5.84 -2.91 -0.02 2.85 16 10 C 0.01 0.68 5.46 84.66 0.46 1.14 16 11 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 12 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 C 0.10 3.94 1.55 44.94 0.07 4.01 16 17 H 0.02 0.70 6.51 -2.39 -0.02 0.69 16 18 C 0.08 2.92 5.88 86.30 0.51 3.43 16 19 N -0.84 -25.51 9.05 -186.72 -1.69 -27.20 16 20 C -0.09 -2.70 4.52 30.65 0.14 -2.56 16 21 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.98 8.14 -2.38 -0.02 1.97 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.01 0.54 7.10 -2.39 -0.02 0.52 16 27 H 0.05 2.21 8.05 -2.38 -0.02 2.19 16 28 H 0.00 -0.13 8.04 -2.38 -0.02 -0.14 16 29 H 0.01 0.77 6.32 -2.39 -0.02 0.75 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.01 0.49 6.04 -2.39 -0.01 0.48 16 33 H 0.35 9.17 9.08 -89.69 -0.81 8.35 16 34 H 0.34 10.17 8.93 -89.70 -0.80 9.37 16 35 H 0.08 2.26 7.73 -2.39 -0.02 2.24 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -61.03 277.02 -1.04 -62.07 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.56 Total: 19.74 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 3.00 Total: -18.13 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -5.52 Total: -109.77 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -61.03 -1.04 -62.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300039784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.736 kcal (2) G-P(sol) polarization free energy of solvation -61.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds